RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-215ENST00000533818 SLIT2O94813 1529 aa16.8■□□□□ 0.28
CSDE1-215ENST00000533818 METP08581 1390 aa16.8■□□□□ 0.28
CSDE1-215ENST00000533818 A0A0G2JS52 829 aa16.8■□□□□ 0.28
CSDE1-215ENST00000533818 MYT1Q01538 1121 aa16.8■□□□□ 0.28
CSDE1-215ENST00000533818 VPS72Q15906 364 aa16.8■□□□□ 0.28
CSDE1-215ENST00000533818 ABCC5O15440 1437 aa16.79■□□□□ 0.28
CSDE1-215ENST00000533818 NPHP3Q7Z494 1330 aa16.79■□□□□ 0.28
CSDE1-215ENST00000533818 EZH2Q15910 746 aaKnown RBP16.78■□□□□ 0.28
CSDE1-215ENST00000533818 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.78■□□□□ 0.28
CSDE1-215ENST00000533818 XPCQ01831 940 aaPredicted RBP16.77■□□□□ 0.28
CSDE1-215ENST00000533818 CHIC2Q9UKJ5 165 aa16.77■□□□□ 0.28
CSDE1-215ENST00000533818 MARF1Q9Y4F3 1742 aaKnown RBP16.76■□□□□ 0.27
CSDE1-215ENST00000533818 ESCO1Q5FWF5 840 aa16.75■□□□□ 0.27
CSDE1-215ENST00000533818 ANKRD30AQ9BXX3 1397 aa16.75■□□□□ 0.27
CSDE1-215ENST00000533818 NALCNQ8IZF0 1738 aa16.74■□□□□ 0.27
CSDE1-215ENST00000533818 FOXO3O43524 673 aa16.74■□□□□ 0.27
CSDE1-215ENST00000533818 FAM182BQ5T319 152 aa16.73■□□□□ 0.27
CSDE1-215ENST00000533818 SPON1Q9HCB6 807 aa16.73■□□□□ 0.27
CSDE1-215ENST00000533818 NINLQ9Y2I6 1382 aa16.73■□□□□ 0.27
CSDE1-215ENST00000533818 CAMKK2Q96RR4 588 aa16.72■□□□□ 0.27
CSDE1-215ENST00000533818 DISP2A7MBM2 1401 aa16.71■□□□□ 0.27
CSDE1-215ENST00000533818 PXDNQ92626 1479 aa16.71■□□□□ 0.27
CSDE1-215ENST00000533818 HAP1P54257 671 aaPredicted RBP16.7■□□□□ 0.26
CSDE1-215ENST00000533818 FAM98CQ17RN3 349 aaKnown RBP16.7■□□□□ 0.26
CSDE1-215ENST00000533818 DAPK1P53355 1430 aa16.7■□□□□ 0.26
CSDE1-215ENST00000533818 KCNQ2O43526 872 aa16.69■□□□□ 0.26
CSDE1-215ENST00000533818 NRXN3Q9Y4C0 1643 aa16.68■□□□□ 0.26
CSDE1-215ENST00000533818 LRPPRCP42704 1394 aaKnown RBP16.67■□□□□ 0.26
CSDE1-215ENST00000533818 NBPF8Q3BBV2 869 aa16.67■□□□□ 0.26
CSDE1-215ENST00000533818 NBPF14Q5TI25 921 aa16.67■□□□□ 0.26
CSDE1-215ENST00000533818 CROCC2H7BZ55 1655 aa16.66■□□□□ 0.26
CSDE1-215ENST00000533818 ZNF326Q5BKZ1 582 aaKnown RBP16.66■□□□□ 0.26
CSDE1-215ENST00000533818 KANK4Q5T7N3 995 aaPredicted RBP16.66■□□□□ 0.26
CSDE1-215ENST00000533818 CEP350Q5VT06 3117 aa16.66■□□□□ 0.26
CSDE1-215ENST00000533818 ADGRL2O95490 1459 aa16.66■□□□□ 0.26
CSDE1-215ENST00000533818 RGPD1P0DJD0 1748 aa16.65■□□□□ 0.26
CSDE1-215ENST00000533818 SPATA31A3Q5VYP0 1347 aa16.65■□□□□ 0.26
CSDE1-215ENST00000533818 ROBO2Q9HCK4 1378 aa16.64■□□□□ 0.26
CSDE1-215ENST00000533818 TRIM37O94972 964 aa16.64■□□□□ 0.25
CSDE1-215ENST00000533818 APBA3O96018 575 aa16.64■□□□□ 0.25
CSDE1-215ENST00000533818 PLEKHG5O94827 1062 aa16.63■□□□□ 0.25
CSDE1-215ENST00000533818 CABLES1Q8TDN4 633 aa16.63■□□□□ 0.25
CSDE1-215ENST00000533818 PARD3Q8TEW0 1356 aa16.63■□□□□ 0.25
CSDE1-215ENST00000533818 CAMTA1Q9Y6Y1 1673 aa16.62■□□□□ 0.25
CSDE1-215ENST00000533818 USP32Q8NFA0 1604 aa16.61■□□□□ 0.25
CSDE1-215ENST00000533818 PTPN23Q9H3S7 1636 aa16.61■□□□□ 0.25
CSDE1-215ENST00000533818 FAM83GA6ND36 823 aa16.6■□□□□ 0.25
CSDE1-215ENST00000533818 NUTM2FA1L443 756 aa16.59■□□□□ 0.25
CSDE1-215ENST00000533818 ANKRD50Q9ULJ7 1429 aa16.59■□□□□ 0.25
CSDE1-215ENST00000533818 GIGYF1O75420 1035 aaPredicted RBP16.58■□□□□ 0.24
CSDE1-215ENST00000533818 FAM196AQ6ZSG2 479 aa16.58■□□□□ 0.24
CSDE1-215ENST00000533818 KRT28Q7Z3Y7 464 aa16.58■□□□□ 0.24
CSDE1-215ENST00000533818 TNS1Q9HBL0 1735 aaKnown RBP16.56■□□□□ 0.24
CSDE1-215ENST00000533818 HFM1A2PYH4 1435 aa16.56■□□□□ 0.24
CSDE1-215ENST00000533818 ADGRB2O60241 1585 aa16.55■□□□□ 0.24
CSDE1-215ENST00000533818 BTG4Q9NY30 223 aa16.55■□□□□ 0.24
CSDE1-215ENST00000533818 NWD2Q9ULI1 1742 aa16.55■□□□□ 0.24
CSDE1-215ENST00000533818 E9PCH4 1651 aa16.53■□□□□ 0.24
CSDE1-215ENST00000533818 PLCH1Q4KWH8 1693 aa16.53■□□□□ 0.24
CSDE1-215ENST00000533818 IQGAP3Q86VI3 1631 aa16.53■□□□□ 0.24
CSDE1-215ENST00000533818 LMOD2Q6P5Q4 547 aa16.53■□□□□ 0.24
CSDE1-215ENST00000533818 CCDC144AA2RUR9 1427 aa16.53■□□□□ 0.24
CSDE1-215ENST00000533818 SPATA31A5Q5VU36 1347 aa16.52■□□□□ 0.24
CSDE1-215ENST00000533818 SPATA31A7Q8IWB4 1347 aa16.52■□□□□ 0.24
CSDE1-215ENST00000533818 UTRNP46939 3433 aa16.52■□□□□ 0.23
CSDE1-215ENST00000533818 PSME1Q06323 249 aa16.51■□□□□ 0.23
CSDE1-215ENST00000533818 TNS3Q68CZ2 1445 aa16.49■□□□□ 0.23
CSDE1-215ENST00000533818 CDC42BPGQ6DT37 1551 aa16.49■□□□□ 0.23
CSDE1-215ENST00000533818 PRAG1Q86YV5 1406 aa16.48■□□□□ 0.23
CSDE1-215ENST00000533818 SYT17Q9BSW7 474 aa16.48■□□□□ 0.23
CSDE1-215ENST00000533818 NAIPQ13075 1403 aa16.47■□□□□ 0.23
CSDE1-215ENST00000533818 NUP188Q5SRE5 1749 aa16.46■□□□□ 0.23
CSDE1-215ENST00000533818 FHDC1Q9C0D6 1143 aaPredicted RBP16.46■□□□□ 0.23
CSDE1-215ENST00000533818 RREB1Q92766 1687 aa16.46■□□□□ 0.23
CSDE1-215ENST00000533818 VGFO15240 615 aaPredicted RBP16.45■□□□□ 0.22
CSDE1-215ENST00000533818 ZBTB7AO95365 584 aa16.45■□□□□ 0.22
CSDE1-215ENST00000533818 ARHGEF10O15013 1369 aa16.44■□□□□ 0.22
CSDE1-215ENST00000533818 PTGER2P43116 358 aa16.44■□□□□ 0.22
CSDE1-215ENST00000533818 NEXMIFQ5QGS0 1516 aa16.44■□□□□ 0.22
CSDE1-215ENST00000533818 THSD7AQ9UPZ6 1657 aa16.43■□□□□ 0.22
CSDE1-215ENST00000533818 NRKQ7Z2Y5 1582 aa16.43■□□□□ 0.22
CSDE1-215ENST00000533818 NUP155O75694 1391 aa16.43■□□□□ 0.22
CSDE1-215ENST00000533818 PDE3BQ13370 1112 aa16.43■□□□□ 0.22
CSDE1-215ENST00000533818 ATF5Q9Y2D1 282 aaPredicted RBP16.43■□□□□ 0.22
CSDE1-215ENST00000533818 SBNO1A3KN83 1393 aa16.42■□□□□ 0.22
CSDE1-215ENST00000533818 WAPLQ7Z5K2 1190 aa16.42■□□□□ 0.22
CSDE1-215ENST00000533818 PDGFDQ9GZP0 370 aaPredicted RBP16.42■□□□□ 0.22
CSDE1-215ENST00000533818 PHF8Q9UPP1 1060 aa16.42■□□□□ 0.22
CSDE1-215ENST00000533818 CHD4Q14839 1912 aa16.42■□□□□ 0.22
CSDE1-215ENST00000533818 VPS8Q8N3P4 1428 aa16.42■□□□□ 0.22
CSDE1-215ENST00000533818 NRAPQ86VF7 1730 aa16.42■□□□□ 0.22
CSDE1-215ENST00000533818 SPATA31A1Q5TZJ5 1347 aa16.41■□□□□ 0.22
CSDE1-215ENST00000533818 FAM50AQ14320 339 aaKnown RBP16.39■□□□□ 0.21
CSDE1-215ENST00000533818 ANO8Q9HCE9 1232 aaPredicted RBP16.39■□□□□ 0.21
CSDE1-215ENST00000533818 STK26Q9P289 416 aa16.39■□□□□ 0.21
CSDE1-215ENST00000533818 KIF1AQ12756 1690 aa16.38■□□□□ 0.21
CSDE1-215ENST00000533818 GPR162Q16538 588 aa16.38■□□□□ 0.21
CSDE1-215ENST00000533818 RRBP1Q9P2E9 1410 aaKnown RBP16.37■□□□□ 0.21
CSDE1-215ENST00000533818 MYOM1P52179 1685 aa16.36■□□□□ 0.21
CSDE1-215ENST00000533818 ABCA3Q99758 1704 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms