RNA–Protein interactions for RNA: ENST00000533244.5

CCS-208, Transcript of copper chaperone for superoxide dismutase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCS, Length 1,430 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-208ENST00000533244 C1orf167Q5SNV9 1468 aa29.53■■■□□ 2.32
CCS-208ENST00000533244 BRINP3Q76B58 766 aa29.53■■■□□ 2.32
CCS-208ENST00000533244 PHLPP1O60346 1717 aa29.5■■■□□ 2.31
CCS-208ENST00000533244 PRAM1Q96QH2 718 aa29.5■■■□□ 2.31
CCS-208ENST00000533244 TRAK1Q9UPV9 953 aa29.49■■■□□ 2.31
CCS-208ENST00000533244 ARHGEF28Q8N1W1 1705 aaKnown RBP29.49■■■□□ 2.31
CCS-208ENST00000533244 COL16A1Q07092 1604 aaPredicted RBP29.49■■■□□ 2.31
CCS-208ENST00000533244 NHSL1Q5SYE7 1610 aa29.47■■■□□ 2.31
CCS-208ENST00000533244 FMN2Q9NZ56 1722 aa29.47■■■□□ 2.31
CCS-208ENST00000533244 ADGRB2O60241 1585 aa29.47■■■□□ 2.31
CCS-208ENST00000533244 TRPM1Q7Z4N2 1603 aa29.46■■■□□ 2.31
CCS-208ENST00000533244 NBPF1Q3BBV0 1214 aa29.45■■■□□ 2.31
CCS-208ENST00000533244 POGKQ9P215 609 aa29.43■■■□□ 2.3
CCS-208ENST00000533244 TONSLQ96HA7 1378 aa29.42■■■□□ 2.3
CCS-208ENST00000533244 SAFB2Q14151 953 aaKnown RBP eCLIP29.4■■■□□ 2.3
CCS-208ENST00000533244 ORAI2Q96SN7 254 aa29.39■■■□□ 2.3
CCS-208ENST00000533244 MED1Q15648 1581 aaPredicted RBP29.38■■■□□ 2.29
CCS-208ENST00000533244 CLSPNQ9HAW4 1339 aa29.38■■■□□ 2.29
CCS-208ENST00000533244 NBPF8Q3BBV2 869 aa29.37■■■□□ 2.29
CCS-208ENST00000533244 JCADQ9P266 1359 aa29.35■■■□□ 2.29
CCS-208ENST00000533244 GPRASP1Q5JY77 1395 aa29.33■■■□□ 2.29
CCS-208ENST00000533244 USP32Q8NFA0 1604 aa29.32■■■□□ 2.28
CCS-208ENST00000533244 ANKARQ7Z5J8 1434 aa29.32■■■□□ 2.28
CCS-208ENST00000533244 MINK1Q8N4C8 1332 aaPredicted RBP29.32■■■□□ 2.28
CCS-208ENST00000533244 SHPRHQ149N8 1683 aa29.31■■■□□ 2.28
CCS-208ENST00000533244 NUTM2FA1L443 756 aa29.31■■■□□ 2.28
CCS-208ENST00000533244 DDX17Q92841 729 aaKnown RBP29.31■■■□□ 2.28
CCS-208ENST00000533244 ROCK2O75116 1388 aaKnown RBP29.3■■■□□ 2.28
CCS-208ENST00000533244 ESCO1Q5FWF5 840 aa29.3■■■□□ 2.28
CCS-208ENST00000533244 KIF1AQ12756 1690 aa29.3■■■□□ 2.28
CCS-208ENST00000533244 RGPD8O14715 1765 aaPredicted RBP29.29■■■□□ 2.28
CCS-208ENST00000533244 HIRIP3Q9BW71 556 aaPredicted RBP29.29■■■□□ 2.28
CCS-208ENST00000533244 RALGAPBQ86X10 1494 aa29.29■■■□□ 2.28
CCS-208ENST00000533244 SOS2Q07890 1332 aaPredicted RBP29.28■■■□□ 2.28
CCS-208ENST00000533244 TULP4Q9NRJ4 1543 aa29.28■■■□□ 2.28
CCS-208ENST00000533244 EIF3AQ14152 1382 aaKnown RBP29.27■■■□□ 2.28
CCS-208ENST00000533244 WASLO00401 505 aaPredicted RBP29.27■■■□□ 2.28
CCS-208ENST00000533244 DISP3Q9P2K9 1392 aa29.26■■■□□ 2.27
CCS-208ENST00000533244 PXDNQ92626 1479 aa29.25■■■□□ 2.27
CCS-208ENST00000533244 NPHP3Q7Z494 1330 aa29.25■■■□□ 2.27
CCS-208ENST00000533244 CENPJQ9HC77 1338 aaPredicted RBP29.25■■■□□ 2.27
CCS-208ENST00000533244 LRRC59Q96AG4 307 aaKnown RBP29.24■■■□□ 2.27
CCS-208ENST00000533244 QRICH2Q9H0J4 1663 aa29.23■■■□□ 2.27
CCS-208ENST00000533244 PRR36Q9H6K5 1346 aa29.22■■■□□ 2.27
CCS-208ENST00000533244 SPATA31A6Q5VVP1 1343 aa29.21■■■□□ 2.27
CCS-208ENST00000533244 FOXO3O43524 673 aa29.2■■■□□ 2.27
CCS-208ENST00000533244 TIMELESSQ9UNS1 1208 aa29.2■■■□□ 2.27
CCS-208ENST00000533244 ATP7BP35670 1465 aa29.2■■■□□ 2.26
CCS-208ENST00000533244 PNPLA6Q8IY17 1366 aa29.2■■■□□ 2.26
CCS-208ENST00000533244 PHF8Q9UPP1 1060 aa29.2■■■□□ 2.26
CCS-208ENST00000533244 LRP6O75581 1613 aa29.17■■■□□ 2.26
CCS-208ENST00000533244 ITSN1Q15811 1721 aa29.15■■■□□ 2.26
CCS-208ENST00000533244 CCER1Q8TC90 406 aaPredicted RBP29.15■■■□□ 2.26
CCS-208ENST00000533244 CDK19Q9BWU1 502 aa29.15■■■□□ 2.26
CCS-208ENST00000533244 TOPAZ1Q8N9V7 1692 aa29.14■■■□□ 2.26
CCS-208ENST00000533244 CARD11Q9BXL7 1154 aa29.14■■■□□ 2.26
CCS-208ENST00000533244 COL22A1Q8NFW1 1626 aaPredicted RBP29.13■■■□□ 2.25
CCS-208ENST00000533244 XPCQ01831 940 aaPredicted RBP29.11■■■□□ 2.25
CCS-208ENST00000533244 NUDT16Q96DE0 195 aaKnown RBP29.11■■■□□ 2.25
CCS-208ENST00000533244 PMFBP1Q8TBY8 1022 aa29.1■■■□□ 2.25
CCS-208ENST00000533244 SBNO2Q9Y2G9 1366 aa29.1■■■□□ 2.25
CCS-208ENST00000533244 KRT28Q7Z3Y7 464 aa29.09■■■□□ 2.25
CCS-208ENST00000533244 SPATA31A3Q5VYP0 1347 aa29.07■■■□□ 2.24
CCS-208ENST00000533244 SBNO1A3KN83 1393 aa29.06■■■□□ 2.24
CCS-208ENST00000533244 PHF23Q9BUL5 403 aaPredicted RBP29.06■■■□□ 2.24
CCS-208ENST00000533244 TRPM3Q9HCF6 1732 aaPredicted RBP29.05■■■□□ 2.24
CCS-208ENST00000533244 CCDC61Q9Y6R9 512 aa29.05■■■□□ 2.24
CCS-208ENST00000533244 TNS3Q68CZ2 1445 aa29.04■■■□□ 2.24
CCS-208ENST00000533244 RGS17Q9UGC6 210 aaPredicted RBP29.04■■■□□ 2.24
CCS-208ENST00000533244 PSME1Q06323 249 aa29.03■■■□□ 2.24
CCS-208ENST00000533244 SRPK2P78362 688 aaKnown RBP29.03■■■□□ 2.24
CCS-208ENST00000533244 EVC2Q86UK5 1308 aa29.02■■■□□ 2.24
CCS-208ENST00000533244 POLR3AO14802 1390 aaPredicted RBP29.02■■■□□ 2.24
CCS-208ENST00000533244 PLEKHG3A1L390 1219 aa29.02■■■□□ 2.24
CCS-208ENST00000533244 CABP2Q9NPB3 220 aa29.02■■■□□ 2.24
CCS-208ENST00000533244 NUTM2BA6NNL0 878 aaPredicted RBP29.01■■■□□ 2.23
CCS-208ENST00000533244 NUTM2EB1AL46 878 aaPredicted RBP29.01■■■□□ 2.23
CCS-208ENST00000533244 NUTM2AQ8IVF1 878 aaPredicted RBP29.01■■■□□ 2.23
CCS-208ENST00000533244 NGDNQ8NEJ9 315 aaKnown RBP28.99■■■□□ 2.23
CCS-208ENST00000533244 ILDR2Q71H61 639 aa28.98■■■□□ 2.23
CCS-208ENST00000533244 PPIP5K1Q6PFW1 1433 aa28.98■■■□□ 2.23
CCS-208ENST00000533244 ALS2Q96Q42 1657 aa28.98■■■□□ 2.23
CCS-208ENST00000533244 MEX3CQ5U5Q3 659 aaKnown RBP28.96■■■□□ 2.23
CCS-208ENST00000533244 ARHGEF10O15013 1369 aa28.96■■■□□ 2.23
CCS-208ENST00000533244 ACEP12821 1306 aa28.95■■■□□ 2.23
CCS-208ENST00000533244 USP47Q96K76 1375 aa28.92■■■□□ 2.22
CCS-208ENST00000533244 TESK2Q96S53 571 aa28.92■■■□□ 2.22
CCS-208ENST00000533244 ABCA3Q99758 1704 aa28.91■■■□□ 2.22
CCS-208ENST00000533244 ST20-MTHFSA0A0A6YYL1 179 aa28.91■■■□□ 2.22
CCS-208ENST00000533244 ATAD2Q6PL18 1390 aa28.91■■■□□ 2.22
CCS-208ENST00000533244 MARF1Q9Y4F3 1742 aaKnown RBP28.9■■■□□ 2.22
CCS-208ENST00000533244 CABP1Q9NZU7 370 aa28.89■■■□□ 2.22
CCS-208ENST00000533244 ADAMTS2O95450 1211 aa28.88■■■□□ 2.21
CCS-208ENST00000533244 POTEAQ6S8J7 498 aa28.88■■■□□ 2.21
CCS-208ENST00000533244 CRYBG1Q9Y4K1 1723 aa28.86■■■□□ 2.21
CCS-208ENST00000533244 C8orf37Q96NL8 207 aa28.86■■■□□ 2.21
CCS-208ENST00000533244 AFF2P51816 1311 aa28.85■■■□□ 2.21
CCS-208ENST00000533244 BRD4O60885 1362 aaPredicted RBP28.85■■■□□ 2.21
CCS-208ENST00000533244 ZNF772Q68DY9 489 aaPredicted RBP28.85■■■□□ 2.21
CCS-208ENST00000533244 LMOD2Q6P5Q4 547 aa28.85■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms