RNA–Protein interactions for RNA: ENST00000533209.5

SSBP3-214, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-214ENST00000533209 NALCNQ8IZF0 1738 aa17.17■□□□□ 0.34
SSBP3-214ENST00000533209 SLAIN2Q9P270 581 aa17.17■□□□□ 0.34
SSBP3-214ENST00000533209 SCAF1Q9H7N4 1312 aaKnown RBP17.17■□□□□ 0.34
SSBP3-214ENST00000533209 TRPM1Q7Z4N2 1603 aa17.16■□□□□ 0.34
SSBP3-214ENST00000533209 POGKQ9P215 609 aa17.15■□□□□ 0.34
SSBP3-214ENST00000533209 SAFB2Q14151 953 aaKnown RBP eCLIP17.14■□□□□ 0.33
SSBP3-214ENST00000533209 ROCK2O75116 1388 aaKnown RBP17.14■□□□□ 0.33
SSBP3-214ENST00000533209 GPRASP1Q5JY77 1395 aa17.14■□□□□ 0.33
SSBP3-214ENST00000533209 MST1RQ04912 1400 aa17.13■□□□□ 0.33
SSBP3-214ENST00000533209 RALGAPBQ86X10 1494 aa17.12■□□□□ 0.33
SSBP3-214ENST00000533209 CDC42BPGQ6DT37 1551 aa17.11■□□□□ 0.33
SSBP3-214ENST00000533209 ARHGEF28Q8N1W1 1705 aaKnown RBP17.1■□□□□ 0.33
SSBP3-214ENST00000533209 C1orf167Q5SNV9 1468 aa17.09■□□□□ 0.33
SSBP3-214ENST00000533209 ROBO1Q9Y6N7 1651 aa17.08■□□□□ 0.32
SSBP3-214ENST00000533209 MINK1Q8N4C8 1332 aaPredicted RBP17.08■□□□□ 0.32
SSBP3-214ENST00000533209 HSPA1LP34931 641 aa17.08■□□□□ 0.32
SSBP3-214ENST00000533209 CARD11Q9BXL7 1154 aa17.08■□□□□ 0.32
SSBP3-214ENST00000533209 BRINP3Q76B58 766 aa17.07■□□□□ 0.32
SSBP3-214ENST00000533209 HIRIP3Q9BW71 556 aaPredicted RBP17.07■□□□□ 0.32
SSBP3-214ENST00000533209 ADGRB2O60241 1585 aa17.06■□□□□ 0.32
SSBP3-214ENST00000533209 CENPJQ9HC77 1338 aaPredicted RBP17.06■□□□□ 0.32
SSBP3-214ENST00000533209 NUTM2FA1L443 756 aa17.04■□□□□ 0.32
SSBP3-214ENST00000533209 WASLO00401 505 aaPredicted RBP17.04■□□□□ 0.32
SSBP3-214ENST00000533209 ORAI2Q96SN7 254 aa17.04■□□□□ 0.32
SSBP3-214ENST00000533209 FMN2Q9NZ56 1722 aa17.04■□□□□ 0.32
SSBP3-214ENST00000533209 EIF3AQ14152 1382 aaKnown RBP17.02■□□□□ 0.32
SSBP3-214ENST00000533209 ESCO1Q5FWF5 840 aa17.01■□□□□ 0.31
SSBP3-214ENST00000533209 PRR36Q9H6K5 1346 aa17■□□□□ 0.31
SSBP3-214ENST00000533209 ANKARQ7Z5J8 1434 aa17■□□□□ 0.31
SSBP3-214ENST00000533209 AHDC1Q5TGY3 1603 aaPredicted RBP16.99■□□□□ 0.31
SSBP3-214ENST00000533209 DDX17Q92841 729 aaKnown RBP16.99■□□□□ 0.31
SSBP3-214ENST00000533209 CDK19Q9BWU1 502 aa16.99■□□□□ 0.31
SSBP3-214ENST00000533209 TULP4Q9NRJ4 1543 aa16.99■□□□□ 0.31
SSBP3-214ENST00000533209 QRICH2Q9H0J4 1663 aa16.98■□□□□ 0.31
SSBP3-214ENST00000533209 USP32Q8NFA0 1604 aa16.97■□□□□ 0.31
SSBP3-214ENST00000533209 PHF8Q9UPP1 1060 aa16.96■□□□□ 0.31
SSBP3-214ENST00000533209 SBNO2Q9Y2G9 1366 aa16.96■□□□□ 0.31
SSBP3-214ENST00000533209 COL16A1Q07092 1604 aaPredicted RBP16.96■□□□□ 0.3
SSBP3-214ENST00000533209 NHSL1Q5SYE7 1610 aa16.96■□□□□ 0.3
SSBP3-214ENST00000533209 ATP7BP35670 1465 aa16.95■□□□□ 0.3
SSBP3-214ENST00000533209 USP47Q96K76 1375 aa16.95■□□□□ 0.3
SSBP3-214ENST00000533209 NUDT16Q96DE0 195 aaKnown RBP16.95■□□□□ 0.3
SSBP3-214ENST00000533209 PHLPP1O60346 1717 aa16.95■□□□□ 0.3
SSBP3-214ENST00000533209 ST20-MTHFSA0A0A6YYL1 179 aa16.94■□□□□ 0.3
SSBP3-214ENST00000533209 FOXO3O43524 673 aa16.94■□□□□ 0.3
SSBP3-214ENST00000533209 CABP2Q9NPB3 220 aa16.94■□□□□ 0.3
SSBP3-214ENST00000533209 SOS2Q07890 1332 aaPredicted RBP16.94■□□□□ 0.3
SSBP3-214ENST00000533209 NPHP3Q7Z494 1330 aa16.94■□□□□ 0.3
SSBP3-214ENST00000533209 EVC2Q86UK5 1308 aa16.94■□□□□ 0.3
SSBP3-214ENST00000533209 SRPK2P78362 688 aaKnown RBP16.93■□□□□ 0.3
SSBP3-214ENST00000533209 TESK2Q96S53 571 aa16.93■□□□□ 0.3
SSBP3-214ENST00000533209 PMFBP1Q8TBY8 1022 aa16.92■□□□□ 0.3
SSBP3-214ENST00000533209 RGPD8O14715 1765 aaPredicted RBP16.92■□□□□ 0.3
SSBP3-214ENST00000533209 CCDC61Q9Y6R9 512 aa16.91■□□□□ 0.3
SSBP3-214ENST00000533209 PXDNQ92626 1479 aa16.91■□□□□ 0.3
SSBP3-214ENST00000533209 KIF1AQ12756 1690 aa16.91■□□□□ 0.3
SSBP3-214ENST00000533209 XPCQ01831 940 aaPredicted RBP16.9■□□□□ 0.3
SSBP3-214ENST00000533209 LRRC59Q96AG4 307 aaKnown RBP16.9■□□□□ 0.3
SSBP3-214ENST00000533209 JCADQ9P266 1359 aa16.89■□□□□ 0.3
SSBP3-214ENST00000533209 PLEKHG3A1L390 1219 aa16.88■□□□□ 0.29
SSBP3-214ENST00000533209 KRT28Q7Z3Y7 464 aa16.88■□□□□ 0.29
SSBP3-214ENST00000533209 TOPAZ1Q8N9V7 1692 aa16.87■□□□□ 0.29
SSBP3-214ENST00000533209 NGDNQ8NEJ9 315 aaKnown RBP16.86■□□□□ 0.29
SSBP3-214ENST00000533209 POLR3AO14802 1390 aaPredicted RBP16.86■□□□□ 0.29
SSBP3-214ENST00000533209 PNPLA6Q8IY17 1366 aa16.86■□□□□ 0.29
SSBP3-214ENST00000533209 PPIP5K1Q6PFW1 1433 aa16.86■□□□□ 0.29
SSBP3-214ENST00000533209 PSME1Q06323 249 aa16.85■□□□□ 0.29
SSBP3-214ENST00000533209 CABP1Q9NZU7 370 aa16.85■□□□□ 0.29
SSBP3-214ENST00000533209 ACEP12821 1306 aa16.85■□□□□ 0.29
SSBP3-214ENST00000533209 ATAD2Q6PL18 1390 aa16.85■□□□□ 0.29
SSBP3-214ENST00000533209 ITSN1Q15811 1721 aa16.84■□□□□ 0.29
SSBP3-214ENST00000533209 SLC24A1O60721 1099 aa16.84■□□□□ 0.29
SSBP3-214ENST00000533209 HSPA5P11021 654 aaKnown RBP16.84■□□□□ 0.29
SSBP3-214ENST00000533209 EIF4G2P78344 907 aaKnown RBP eCLIP16.84■□□□□ 0.298e-7■■■□□ 16.1
SSBP3-214ENST00000533209 PUS7Q96PZ0 661 aaKnown RBP16.84■□□□□ 0.29
SSBP3-214ENST00000533209 SPATA31A3Q5VYP0 1347 aa16.84■□□□□ 0.29
SSBP3-214ENST00000533209 DISP3Q9P2K9 1392 aa16.84■□□□□ 0.29
SSBP3-214ENST00000533209 SBNO1A3KN83 1393 aa16.83■□□□□ 0.28
SSBP3-214ENST00000533209 SHPRHQ149N8 1683 aa16.83■□□□□ 0.28
SSBP3-214ENST00000533209 SPATA31A6Q5VVP1 1343 aa16.82■□□□□ 0.28
SSBP3-214ENST00000533209 TMF1P82094 1093 aa16.82■□□□□ 0.28
SSBP3-214ENST00000533209 TNS3Q68CZ2 1445 aa16.81■□□□□ 0.28
SSBP3-214ENST00000533209 MED1Q15648 1581 aaPredicted RBP16.8■□□□□ 0.28
SSBP3-214ENST00000533209 TRPM3Q9HCF6 1732 aaPredicted RBP16.79■□□□□ 0.28
SSBP3-214ENST00000533209 LRP6O75581 1613 aa16.78■□□□□ 0.28
SSBP3-214ENST00000533209 NUTM2BA6NNL0 878 aaPredicted RBP16.77■□□□□ 0.28
SSBP3-214ENST00000533209 NUTM2EB1AL46 878 aaPredicted RBP16.77■□□□□ 0.28
SSBP3-214ENST00000533209 NUTM2AQ8IVF1 878 aaPredicted RBP16.77■□□□□ 0.28
SSBP3-214ENST00000533209 SLC12A5Q9H2X9 1139 aa16.77■□□□□ 0.28
SSBP3-214ENST00000533209 USP6P35125 1406 aa16.77■□□□□ 0.27
SSBP3-214ENST00000533209 CPSF1Q10570 1443 aaKnown RBP16.77■□□□□ 0.27
SSBP3-214ENST00000533209 COL22A1Q8NFW1 1626 aaPredicted RBP16.77■□□□□ 0.27
SSBP3-214ENST00000533209 ARHGEF10O15013 1369 aa16.77■□□□□ 0.27
SSBP3-214ENST00000533209 PAK3O75914 559 aaPredicted RBP16.76■□□□□ 0.27
SSBP3-214ENST00000533209 CDCA8Q53HL2 280 aa16.76■□□□□ 0.27
SSBP3-214ENST00000533209 LMOD2Q6P5Q4 547 aa16.76■□□□□ 0.27
SSBP3-214ENST00000533209 TMC1Q8TDI8 760 aa16.76■□□□□ 0.27
SSBP3-214ENST00000533209 CD163L1Q9NR16 1453 aa16.75■□□□□ 0.27
SSBP3-214ENST00000533209 ZNF692Q9BU19 519 aaPredicted RBP16.75■□□□□ 0.27
SSBP3-214ENST00000533209 SSH2Q76I76 1423 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms