RNA–Protein interactions for RNA: ENST00000527154.5

CHMP4A-203, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-203ENST00000527154 PXDNQ92626 1479 aa25.09■■□□□ 1.61
CHMP4A-203ENST00000527154 HFM1A2PYH4 1435 aa25.06■■□□□ 1.6
CHMP4A-203ENST00000527154 GJD4Q96KN9 370 aaPredicted RBP25.05■■□□□ 1.6
CHMP4A-203ENST00000527154 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.05■■□□□ 1.6
CHMP4A-203ENST00000527154 MARF1Q9Y4F3 1742 aaKnown RBP25.04■■□□□ 1.6
CHMP4A-203ENST00000527154 BLMP54132 1417 aaPredicted RBP25.03■■□□□ 1.6
CHMP4A-203ENST00000527154 CDC42BPGQ6DT37 1551 aa25.03■■□□□ 1.6
CHMP4A-203ENST00000527154 NPHP3Q7Z494 1330 aa25.03■■□□□ 1.6
CHMP4A-203ENST00000527154 SLIT2O94813 1529 aa25.02■■□□□ 1.6
CHMP4A-203ENST00000527154 GLI3P10071 1580 aa25■■□□□ 1.59
CHMP4A-203ENST00000527154 LRP5O75197 1615 aa24.98■■□□□ 1.59
CHMP4A-203ENST00000527154 VGFO15240 615 aaPredicted RBP24.98■■□□□ 1.59
CHMP4A-203ENST00000527154 RALGAPBQ86X10 1494 aa24.97■■□□□ 1.59
CHMP4A-203ENST00000527154 KIF1BO60333 1816 aa24.96■■□□□ 1.59
CHMP4A-203ENST00000527154 RPGRIP1LQ68CZ1 1315 aa24.94■■□□□ 1.58
CHMP4A-203ENST00000527154 UNC5CLQ8IV45 518 aa24.94■■□□□ 1.58
CHMP4A-203ENST00000527154 TECPR2O15040 1411 aa24.93■■□□□ 1.58
CHMP4A-203ENST00000527154 FOXO3O43524 673 aa24.91■■□□□ 1.58
CHMP4A-203ENST00000527154 ESCO1Q5FWF5 840 aa24.91■■□□□ 1.58
CHMP4A-203ENST00000527154 ONECUT3O60422 494 aaPredicted RBP24.9■■□□□ 1.58
CHMP4A-203ENST00000527154 LRPPRCP42704 1394 aaKnown RBP24.9■■□□□ 1.58
CHMP4A-203ENST00000527154 DEFB132Q7Z7B7 95 aa24.89■■□□□ 1.58
CHMP4A-203ENST00000527154 SPATA31A3Q5VYP0 1347 aa24.87■■□□□ 1.57
CHMP4A-203ENST00000527154 NAIPQ13075 1403 aa24.87■■□□□ 1.57
CHMP4A-203ENST00000527154 BRWD3Q6RI45 1802 aa24.87■■□□□ 1.57
CHMP4A-203ENST00000527154 PPLO60437 1756 aa24.87■■□□□ 1.57
CHMP4A-203ENST00000527154 USP32Q8NFA0 1604 aa24.86■■□□□ 1.57
CHMP4A-203ENST00000527154 XPCQ01831 940 aaPredicted RBP24.84■■□□□ 1.57
CHMP4A-203ENST00000527154 VPS72Q15906 364 aa24.83■■□□□ 1.57
CHMP4A-203ENST00000527154 SEPT12Q8IYM1 358 aa24.82■■□□□ 1.56
CHMP4A-203ENST00000527154 CCDC144AA2RUR9 1427 aa24.81■■□□□ 1.56
CHMP4A-203ENST00000527154 ABCC11Q96J66 1382 aa24.8■■□□□ 1.56
CHMP4A-203ENST00000527154 ITGAEP38570 1179 aa24.8■■□□□ 1.56
CHMP4A-203ENST00000527154 KIF1AQ12756 1690 aa24.8■■□□□ 1.56
CHMP4A-203ENST00000527154 NWD2Q9ULI1 1742 aa24.79■■□□□ 1.56
CHMP4A-203ENST00000527154 FMN2Q9NZ56 1722 aa24.78■■□□□ 1.56
CHMP4A-203ENST00000527154 KNDC1Q76NI1 1749 aa24.76■■□□□ 1.55
CHMP4A-203ENST00000527154 SF3B2Q13435 895 aaKnown RBP24.76■■□□□ 1.55
CHMP4A-203ENST00000527154 HRCP23327 699 aa24.75■■□□□ 1.55
CHMP4A-203ENST00000527154 WAPLQ7Z5K2 1190 aa24.75■■□□□ 1.55
CHMP4A-203ENST00000527154 TNS3Q68CZ2 1445 aa24.75■■□□□ 1.55
CHMP4A-203ENST00000527154 KRT27Q7Z3Y8 459 aa24.74■■□□□ 1.55
CHMP4A-203ENST00000527154 PLEKHH1Q9ULM0 1364 aa24.74■■□□□ 1.55
CHMP4A-203ENST00000527154 PLCH1Q4KWH8 1693 aa24.73■■□□□ 1.55
CHMP4A-203ENST00000527154 RRBP1Q9P2E9 1410 aaKnown RBP24.73■■□□□ 1.55
CHMP4A-203ENST00000527154 ADGRF5Q8IZF2 1346 aa24.73■■□□□ 1.55
CHMP4A-203ENST00000527154 KRT28Q7Z3Y7 464 aa24.72■■□□□ 1.55
CHMP4A-203ENST00000527154 SBNO1A3KN83 1393 aa24.71■■□□□ 1.55
CHMP4A-203ENST00000527154 SPATA31E1Q6ZUB1 1445 aa24.7■■□□□ 1.55
CHMP4A-203ENST00000527154 ABCA3Q99758 1704 aa24.7■■□□□ 1.54
CHMP4A-203ENST00000527154 NUTM2FA1L443 756 aa24.7■■□□□ 1.54
CHMP4A-203ENST00000527154 SIRT1Q96EB6 747 aa24.7■■□□□ 1.54
CHMP4A-203ENST00000527154 DISP2A7MBM2 1401 aa24.69■■□□□ 1.54
CHMP4A-203ENST00000527154 NRXN1Q9ULB1 1477 aa24.68■■□□□ 1.54
CHMP4A-203ENST00000527154 PIK3C2GO75747 1445 aa24.68■■□□□ 1.54
CHMP4A-203ENST00000527154 ANKRD30BQ9BXX2 1392 aa24.67■■□□□ 1.54
CHMP4A-203ENST00000527154 BAG6P46379 1132 aa24.67■■□□□ 1.54
CHMP4A-203ENST00000527154 NRAPQ86VF7 1730 aa24.66■■□□□ 1.54
CHMP4A-203ENST00000527154 IFT172Q9UG01 1749 aa24.66■■□□□ 1.54
CHMP4A-203ENST00000527154 PSDA5PKW4 1024 aaPredicted RBP24.65■■□□□ 1.54
CHMP4A-203ENST00000527154 ARHGEF10O15013 1369 aa24.65■■□□□ 1.54
CHMP4A-203ENST00000527154 YTHDC2Q9H6S0 1430 aaKnown RBP24.64■■□□□ 1.54
CHMP4A-203ENST00000527154 FAM83GA6ND36 823 aa24.64■■□□□ 1.54
CHMP4A-203ENST00000527154 CABLES1Q8TDN4 633 aa24.64■■□□□ 1.54
CHMP4A-203ENST00000527154 STK26Q9P289 416 aa24.64■■□□□ 1.54
CHMP4A-203ENST00000527154 PHF8Q9UPP1 1060 aa24.64■■□□□ 1.54
CHMP4A-203ENST00000527154 PSME1Q06323 249 aa24.63■■□□□ 1.53
CHMP4A-203ENST00000527154 SLC4A1APQ9BWU0 796 aaKnown RBP24.62■■□□□ 1.53
CHMP4A-203ENST00000527154 TMEM132EQ6IEE7 984 aa24.61■■□□□ 1.53
CHMP4A-203ENST00000527154 RGPD1P0DJD0 1748 aa24.6■■□□□ 1.53
CHMP4A-203ENST00000527154 RGPD8O14715 1765 aaPredicted RBP24.58■■□□□ 1.53
CHMP4A-203ENST00000527154 THSD7AQ9UPZ6 1657 aa24.57■■□□□ 1.52
CHMP4A-203ENST00000527154 EN1Q05925 392 aaPredicted RBP24.57■■□□□ 1.52
CHMP4A-203ENST00000527154 TNS1Q9HBL0 1735 aaKnown RBP24.56■■□□□ 1.52
CHMP4A-203ENST00000527154 HAP1P54257 671 aaPredicted RBP24.56■■□□□ 1.52
CHMP4A-203ENST00000527154 FAM98CQ17RN3 349 aaKnown RBP24.56■■□□□ 1.52
CHMP4A-203ENST00000527154 CCDC9Q9Y3X0 531 aaKnown RBP24.56■■□□□ 1.52
CHMP4A-203ENST00000527154 ANKARQ7Z5J8 1434 aa24.55■■□□□ 1.52
CHMP4A-203ENST00000527154 TRPM3Q9HCF6 1732 aaPredicted RBP24.55■■□□□ 1.52
CHMP4A-203ENST00000527154 SPATA31A5Q5VU36 1347 aa24.54■■□□□ 1.52
CHMP4A-203ENST00000527154 SPATA31A7Q8IWB4 1347 aa24.54■■□□□ 1.52
CHMP4A-203ENST00000527154 COL14A1Q05707 1796 aaKnown RBP24.53■■□□□ 1.52
CHMP4A-203ENST00000527154 C14orf93Q9H972 538 aaKnown RBP24.53■■□□□ 1.52
CHMP4A-203ENST00000527154 R3HDM1Q15032 1099 aaKnown RBP24.52■■□□□ 1.52
CHMP4A-203ENST00000527154 BTG4Q9NY30 223 aa24.52■■□□□ 1.52
CHMP4A-203ENST00000527154 ALS2Q96Q42 1657 aa24.52■■□□□ 1.52
CHMP4A-203ENST00000527154 ADGRB2O60241 1585 aa24.5■■□□□ 1.51
CHMP4A-203ENST00000527154 CAMKK2Q96RR4 588 aa24.5■■□□□ 1.51
CHMP4A-203ENST00000527154 RGL3Q3MIN7 710 aa24.49■■□□□ 1.51
CHMP4A-203ENST00000527154 DLC1Q96QB1 1528 aa24.49■■□□□ 1.51
CHMP4A-203ENST00000527154 CRYBG1Q9Y4K1 1723 aa24.48■■□□□ 1.51
CHMP4A-203ENST00000527154 PARD3Q8TEW0 1356 aa24.47■■□□□ 1.51
CHMP4A-203ENST00000527154 EZH2Q15910 746 aaKnown RBP24.46■■□□□ 1.51
CHMP4A-203ENST00000527154 FAM182BQ5T319 152 aa24.46■■□□□ 1.51
CHMP4A-203ENST00000527154 DHX57Q6P158 1386 aaKnown RBP24.45■■□□□ 1.5
CHMP4A-203ENST00000527154 A0A0G2JS52 829 aa24.45■■□□□ 1.5
CHMP4A-203ENST00000527154 MYT1Q01538 1121 aa24.45■■□□□ 1.5
CHMP4A-203ENST00000527154 PPARGC1BQ86YN6 1023 aaKnown RBP24.45■■□□□ 1.5
CHMP4A-203ENST00000527154 LMOD2Q6P5Q4 547 aa24.44■■□□□ 1.5
CHMP4A-203ENST00000527154 PRAM1Q96QH2 718 aa24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms