RNA–Protein interactions for RNA: ENST00000521621.5

CLK4-209, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 2,780 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-209ENST00000521621 L3MBTL2Q969R5 705 aa13.68□□□□□ -0.22
CLK4-209ENST00000521621 RALGAPBQ86X10 1494 aa13.67□□□□□ -0.22
CLK4-209ENST00000521621 TMEM132EQ6IEE7 984 aa13.65□□□□□ -0.22
CLK4-209ENST00000521621 ITSN1Q15811 1721 aa13.65□□□□□ -0.23
CLK4-209ENST00000521621 USP32Q8NFA0 1604 aa13.64□□□□□ -0.23
CLK4-209ENST00000521621 SIN3AQ96ST3 1273 aa13.64□□□□□ -0.23
CLK4-209ENST00000521621 COL22A1Q8NFW1 1626 aaPredicted RBP13.64□□□□□ -0.23
CLK4-209ENST00000521621 TULP4Q9NRJ4 1543 aa13.64□□□□□ -0.23
CLK4-209ENST00000521621 PLEKHH1Q9ULM0 1364 aa13.64□□□□□ -0.23
CLK4-209ENST00000521621 TOPAZ1Q8N9V7 1692 aa13.64□□□□□ -0.23
CLK4-209ENST00000521621 HSPA1LP34931 641 aa13.63□□□□□ -0.23
CLK4-209ENST00000521621 C14orf37Q86TY3 774 aa13.63□□□□□ -0.23
CLK4-209ENST00000521621 BRINP3Q76B58 766 aa13.62□□□□□ -0.23
CLK4-209ENST00000521621 KDM2AQ9Y2K7 1162 aa13.62□□□□□ -0.23
CLK4-209ENST00000521621 TONSLQ96HA7 1378 aa13.62□□□□□ -0.23
CLK4-209ENST00000521621 QRICH2Q9H0J4 1663 aa13.62□□□□□ -0.23
CLK4-209ENST00000521621 SBNO2Q9Y2G9 1366 aa13.62□□□□□ -0.23
CLK4-209ENST00000521621 PIP4K2BP78356 416 aa13.61□□□□□ -0.23
CLK4-209ENST00000521621 RBM33Q96EV2 1170 aaKnown RBP13.6□□□□□ -0.23
CLK4-209ENST00000521621 MED1Q15648 1581 aaPredicted RBP13.6□□□□□ -0.23
CLK4-209ENST00000521621 WAPLQ7Z5K2 1190 aa13.6□□□□□ -0.23
CLK4-209ENST00000521621 PRAM1Q96QH2 718 aa13.6□□□□□ -0.23
CLK4-209ENST00000521621 SENP3Q9H4L4 574 aaPredicted RBP13.6□□□□□ -0.23
CLK4-209ENST00000521621 JCADQ9P266 1359 aa13.6□□□□□ -0.23
CLK4-209ENST00000521621 PXDNQ92626 1479 aa13.59□□□□□ -0.23
CLK4-209ENST00000521621 SOS2Q07890 1332 aaPredicted RBP13.59□□□□□ -0.23
CLK4-209ENST00000521621 STK26Q9P289 416 aa13.59□□□□□ -0.23
CLK4-209ENST00000521621 SPATA31A6Q5VVP1 1343 aa13.57□□□□□ -0.24
CLK4-209ENST00000521621 RGPD8O14715 1765 aaPredicted RBP13.56□□□□□ -0.24
CLK4-209ENST00000521621 PCGF6Q9BYE7 350 aa13.56□□□□□ -0.24
CLK4-209ENST00000521621 POGKQ9P215 609 aa13.56□□□□□ -0.24
CLK4-209ENST00000521621 ATP7BP35670 1465 aa13.56□□□□□ -0.24
CLK4-209ENST00000521621 NEUROD1Q13562 356 aa13.56□□□□□ -0.24
CLK4-209ENST00000521621 TRPM3Q9HCF6 1732 aaPredicted RBP13.56□□□□□ -0.24
CLK4-209ENST00000521621 ROCK2O75116 1388 aaKnown RBP13.56□□□□□ -0.24
CLK4-209ENST00000521621 NBPF1Q3BBV0 1214 aa13.55□□□□□ -0.24
CLK4-209ENST00000521621 BRD4O60885 1362 aaPredicted RBP13.55□□□□□ -0.24
CLK4-209ENST00000521621 WASLO00401 505 aaPredicted RBP13.55□□□□□ -0.24
CLK4-209ENST00000521621 NBPF8Q3BBV2 869 aa13.55□□□□□ -0.24
CLK4-209ENST00000521621 TRAK1Q9UPV9 953 aa13.55□□□□□ -0.24
CLK4-209ENST00000521621 PUS7Q96PZ0 661 aaKnown RBP13.54□□□□□ -0.24
CLK4-209ENST00000521621 NPHP3Q7Z494 1330 aa13.54□□□□□ -0.24
CLK4-209ENST00000521621 SCAF1Q9H7N4 1312 aaKnown RBP13.54□□□□□ -0.24
CLK4-209ENST00000521621 CENPJQ9HC77 1338 aaPredicted RBP13.54□□□□□ -0.24
CLK4-209ENST00000521621 SLC24A1O60721 1099 aa13.54□□□□□ -0.24
CLK4-209ENST00000521621 SBNO1A3KN83 1393 aa13.54□□□□□ -0.24
CLK4-209ENST00000521621 LRRC59Q96AG4 307 aaKnown RBP13.53□□□□□ -0.24
CLK4-209ENST00000521621 ALS2Q96Q42 1657 aa13.52□□□□□ -0.24
CLK4-209ENST00000521621 POLR3AO14802 1390 aaPredicted RBP13.52□□□□□ -0.25
CLK4-209ENST00000521621 PNPLA6Q8IY17 1366 aa13.51□□□□□ -0.25
CLK4-209ENST00000521621 MARF1Q9Y4F3 1742 aaKnown RBP13.51□□□□□ -0.25
CLK4-209ENST00000521621 ORAI2Q96SN7 254 aa13.5□□□□□ -0.25
CLK4-209ENST00000521621 CRYBG1Q9Y4K1 1723 aa13.5□□□□□ -0.25
CLK4-209ENST00000521621 PLEKHG3A1L390 1219 aa13.49□□□□□ -0.25
CLK4-209ENST00000521621 ABCA3Q99758 1704 aa13.49□□□□□ -0.25
CLK4-209ENST00000521621 PHF8Q9UPP1 1060 aa13.49□□□□□ -0.25
CLK4-209ENST00000521621 PRR36Q9H6K5 1346 aa13.48□□□□□ -0.25
CLK4-209ENST00000521621 AKAP12Q02952 1782 aa13.48□□□□□ -0.25
CLK4-209ENST00000521621 USP54Q70EL1 1684 aa13.48□□□□□ -0.25
CLK4-209ENST00000521621 ESCO1Q5FWF5 840 aa13.48□□□□□ -0.25
CLK4-209ENST00000521621 TNS3Q68CZ2 1445 aa13.48□□□□□ -0.25
CLK4-209ENST00000521621 PSME1Q06323 249 aa13.47□□□□□ -0.25
CLK4-209ENST00000521621 LRP6O75581 1613 aa13.47□□□□□ -0.25
CLK4-209ENST00000521621 MINK1Q8N4C8 1332 aaPredicted RBP13.47□□□□□ -0.25
CLK4-209ENST00000521621 ARHGEF10O15013 1369 aa13.46□□□□□ -0.25
CLK4-209ENST00000521621 SPATA31A3Q5VYP0 1347 aa13.46□□□□□ -0.25
CLK4-209ENST00000521621 EVC2Q86UK5 1308 aa13.46□□□□□ -0.25
CLK4-209ENST00000521621 CDK19Q9BWU1 502 aa13.46□□□□□ -0.25
CLK4-209ENST00000521621 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.46□□□□□ -0.26
CLK4-209ENST00000521621 NUDT16Q96DE0 195 aaKnown RBP13.45□□□□□ -0.26
CLK4-209ENST00000521621 CARD11Q9BXL7 1154 aa13.45□□□□□ -0.26
CLK4-209ENST00000521621 ATAD2Q6PL18 1390 aa13.45□□□□□ -0.26
CLK4-209ENST00000521621 NINLQ9Y2I6 1382 aa13.45□□□□□ -0.26
CLK4-209ENST00000521621 NRKQ7Z2Y5 1582 aa13.45□□□□□ -0.26
CLK4-209ENST00000521621 CCDC61Q9Y6R9 512 aa13.45□□□□□ -0.26
CLK4-209ENST00000521621 MON2Q7Z3U7 1717 aa13.44□□□□□ -0.26
CLK4-209ENST00000521621 SSH2Q76I76 1423 aa13.43□□□□□ -0.26
CLK4-209ENST00000521621 KRT28Q7Z3Y7 464 aa13.42□□□□□ -0.26
CLK4-209ENST00000521621 CCER1Q8TC90 406 aaPredicted RBP13.42□□□□□ -0.26
CLK4-209ENST00000521621 CPSF1Q10570 1443 aaKnown RBP13.42□□□□□ -0.26
CLK4-209ENST00000521621 PPIP5K1Q6PFW1 1433 aa13.42□□□□□ -0.26
CLK4-209ENST00000521621 NWD2Q9ULI1 1742 aa13.42□□□□□ -0.26
CLK4-209ENST00000521621 SAFB2Q14151 953 aaKnown RBP eCLIP13.42□□□□□ -0.26
CLK4-209ENST00000521621 TESK2Q96S53 571 aa13.41□□□□□ -0.26
CLK4-209ENST00000521621 PHRF1Q9P1Y6 1649 aaKnown RBP13.41□□□□□ -0.26
CLK4-209ENST00000521621 FOXO3O43524 673 aa13.4□□□□□ -0.26
CLK4-209ENST00000521621 HIRIP3Q9BW71 556 aaPredicted RBP13.4□□□□□ -0.26
CLK4-209ENST00000521621 USP47Q96K76 1375 aa13.39□□□□□ -0.27
CLK4-209ENST00000521621 CDK12Q9NYV4 1490 aaPredicted RBP13.39□□□□□ -0.27
CLK4-209ENST00000521621 ZNF692Q9BU19 519 aaPredicted RBP13.38□□□□□ -0.27
CLK4-209ENST00000521621 DISP3Q9P2K9 1392 aa13.38□□□□□ -0.27
CLK4-209ENST00000521621 USP6P35125 1406 aa13.38□□□□□ -0.27
CLK4-209ENST00000521621 SLIT3O75094 1523 aa13.38□□□□□ -0.27
CLK4-209ENST00000521621 COL14A1Q05707 1796 aaKnown RBP13.38□□□□□ -0.27
CLK4-209ENST00000521621 DDX17Q92841 729 aaKnown RBP13.37□□□□□ -0.27
CLK4-209ENST00000521621 ABCC6O95255 1503 aa13.37□□□□□ -0.27
CLK4-209ENST00000521621 CD163L1Q9NR16 1453 aa13.37□□□□□ -0.27
CLK4-209ENST00000521621 ACEP12821 1306 aa13.37□□□□□ -0.27
CLK4-209ENST00000521621 SLIT2O94813 1529 aa13.36□□□□□ -0.27
CLK4-209ENST00000521621 SRPK2P78362 688 aaKnown RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms