RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 ADGRL3Q9HAR2 1447 aa21.72■■□□□ 1.07
LSM1-203ENST00000520755 SIRT1Q96EB6 747 aa21.71■■□□□ 1.07
LSM1-203ENST00000520755 CARD11Q9BXL7 1154 aa21.71■■□□□ 1.07
LSM1-203ENST00000520755 UBAP1LF5GYI3 381 aa21.69■■□□□ 1.06
LSM1-203ENST00000520755 C19orf44Q9H6X5 657 aa21.69■■□□□ 1.06
LSM1-203ENST00000520755 ATF3P18847 181 aa21.66■■□□□ 1.06
LSM1-203ENST00000520755 TOM1O60784 492 aa21.65■■□□□ 1.06
LSM1-203ENST00000520755 CDC42BPGQ6DT37 1551 aa21.65■■□□□ 1.06
LSM1-203ENST00000520755 DCCP43146 1447 aa21.64■■□□□ 1.06
LSM1-203ENST00000520755 EIF3AQ14152 1382 aaKnown RBP21.64■■□□□ 1.06
LSM1-203ENST00000520755 MINK1Q8N4C8 1332 aaPredicted RBP21.63■■□□□ 1.05
LSM1-203ENST00000520755 ADGRB2O60241 1585 aa21.63■■□□□ 1.05
LSM1-203ENST00000520755 CADPS2Q86UW7 1296 aa21.63■■□□□ 1.05
LSM1-203ENST00000520755 CENPJQ9HC77 1338 aaPredicted RBP21.62■■□□□ 1.05
LSM1-203ENST00000520755 HIRIP3Q9BW71 556 aaPredicted RBP21.62■■□□□ 1.05
LSM1-203ENST00000520755 FMN2Q9NZ56 1722 aa21.62■■□□□ 1.05
LSM1-203ENST00000520755 SCAF1Q9H7N4 1312 aaKnown RBP21.61■■□□□ 1.05
LSM1-203ENST00000520755 HSPA5P11021 654 aaKnown RBP21.61■■□□□ 1.05
LSM1-203ENST00000520755 PIP4K2BP78356 416 aa21.61■■□□□ 1.05
LSM1-203ENST00000520755 TULP4Q9NRJ4 1543 aa21.6■■□□□ 1.05
LSM1-203ENST00000520755 EIF4G2P78344 907 aaKnown RBP eCLIP21.59■■□□□ 1.05
LSM1-203ENST00000520755 FBXO41Q8TF61 875 aa21.59■■□□□ 1.05
LSM1-203ENST00000520755 RGPD8O14715 1765 aaPredicted RBP21.59■■□□□ 1.05
LSM1-203ENST00000520755 MST1RQ04912 1400 aa21.58■■□□□ 1.05
LSM1-203ENST00000520755 SLAIN2Q9P270 581 aa21.58■■□□□ 1.05
LSM1-203ENST00000520755 ROBO1Q9Y6N7 1651 aa21.57■■□□□ 1.04
LSM1-203ENST00000520755 ST20-MTHFSA0A0A6YYL1 179 aa21.57■■□□□ 1.04
LSM1-203ENST00000520755 SBNO2Q9Y2G9 1366 aa21.57■■□□□ 1.04
LSM1-203ENST00000520755 NUTM2FA1L443 756 aa21.56■■□□□ 1.04
LSM1-203ENST00000520755 TESK2Q96S53 571 aa21.55■■□□□ 1.04
LSM1-203ENST00000520755 MYOM1P52179 1685 aa21.53■■□□□ 1.04
LSM1-203ENST00000520755 C1orf167Q5SNV9 1468 aa21.53■■□□□ 1.04
LSM1-203ENST00000520755 WASLO00401 505 aaPredicted RBP21.53■■□□□ 1.04
LSM1-203ENST00000520755 USP32Q8NFA0 1604 aa21.53■■□□□ 1.04
LSM1-203ENST00000520755 TOPAZ1Q8N9V7 1692 aa21.5■■□□□ 1.03
LSM1-203ENST00000520755 DISP3Q9P2K9 1392 aa21.5■■□□□ 1.03
LSM1-203ENST00000520755 CDK19Q9BWU1 502 aa21.5■■□□□ 1.03
LSM1-203ENST00000520755 ITSN1Q15811 1721 aa21.49■■□□□ 1.03
LSM1-203ENST00000520755 SRPK2P78362 688 aaKnown RBP21.47■■□□□ 1.03
LSM1-203ENST00000520755 ESCO1Q5FWF5 840 aa21.47■■□□□ 1.03
LSM1-203ENST00000520755 BRINP3Q76B58 766 aa21.47■■□□□ 1.03
LSM1-203ENST00000520755 ORAI2Q96SN7 254 aa21.47■■□□□ 1.03
LSM1-203ENST00000520755 EVC2Q86UK5 1308 aa21.47■■□□□ 1.03
LSM1-203ENST00000520755 ANKARQ7Z5J8 1434 aa21.46■■□□□ 1.03
LSM1-203ENST00000520755 PRR36Q9H6K5 1346 aa21.46■■□□□ 1.03
LSM1-203ENST00000520755 KIF1AQ12756 1690 aa21.46■■□□□ 1.03
LSM1-203ENST00000520755 PHLPP1O60346 1717 aa21.46■■□□□ 1.03
LSM1-203ENST00000520755 NHSL1Q5SYE7 1610 aa21.45■■□□□ 1.02
LSM1-203ENST00000520755 C11orf95C9JLR9 678 aaPredicted RBP21.45■■□□□ 1.02
LSM1-203ENST00000520755 CABP2Q9NPB3 220 aa21.45■■□□□ 1.02
LSM1-203ENST00000520755 ATP7BP35670 1465 aa21.45■■□□□ 1.02
LSM1-203ENST00000520755 ILDR1Q86SU0 546 aaPredicted RBP21.44■■□□□ 1.02
LSM1-203ENST00000520755 NUDT16Q96DE0 195 aaKnown RBP21.43■■□□□ 1.02
LSM1-203ENST00000520755 AHDC1Q5TGY3 1603 aaPredicted RBP21.41■■□□□ 1.02
LSM1-203ENST00000520755 HSPA1LP34931 641 aa21.4■■□□□ 1.02
LSM1-203ENST00000520755 DDX17Q92841 729 aaKnown RBP21.4■■□□□ 1.02
LSM1-203ENST00000520755 PHF8Q9UPP1 1060 aa21.4■■□□□ 1.02
LSM1-203ENST00000520755 CCDC7Q96M83 1385 aa21.39■■□□□ 1.02
LSM1-203ENST00000520755 KIF7Q2M1P5 1343 aa21.39■■□□□ 1.01
LSM1-203ENST00000520755 PMFBP1Q8TBY8 1022 aa21.39■■□□□ 1.01
LSM1-203ENST00000520755 WASHC2AQ641Q2 1341 aa21.38■■□□□ 1.01
LSM1-203ENST00000520755 TMF1P82094 1093 aa21.38■■□□□ 1.01
LSM1-203ENST00000520755 AKAP12Q02952 1782 aa21.38■■□□□ 1.01
LSM1-203ENST00000520755 ZNF316A6NFI3 1004 aaPredicted RBP21.37■■□□□ 1.01
LSM1-203ENST00000520755 SLC24A1O60721 1099 aa21.37■■□□□ 1.01
LSM1-203ENST00000520755 CCDC61Q9Y6R9 512 aa21.37■■□□□ 1.01
LSM1-203ENST00000520755 PPIP5K1Q6PFW1 1433 aa21.37■■□□□ 1.01
LSM1-203ENST00000520755 COL16A1Q07092 1604 aaPredicted RBP21.37■■□□□ 1.01
LSM1-203ENST00000520755 FOXO3O43524 673 aa21.36■■□□□ 1.01
LSM1-203ENST00000520755 ATAD2Q6PL18 1390 aa21.35■■□□□ 1.01
LSM1-203ENST00000520755 NPHP3Q7Z494 1330 aa21.34■■□□□ 1.01
LSM1-203ENST00000520755 XPCQ01831 940 aaPredicted RBP21.34■■□□□ 1.01
LSM1-203ENST00000520755 MON2Q7Z3U7 1717 aa21.34■■□□□ 1.01
LSM1-203ENST00000520755 NGDNQ8NEJ9 315 aaKnown RBP21.33■■□□□ 1.01
LSM1-203ENST00000520755 CABP1Q9NZU7 370 aa21.32■■□□□ 1
LSM1-203ENST00000520755 PXDNQ92626 1479 aa21.32■■□□□ 1
LSM1-203ENST00000520755 ACEP12821 1306 aa21.3■■□□□ 1
LSM1-203ENST00000520755 PLEKHG3A1L390 1219 aa21.3■■□□□ 1
LSM1-203ENST00000520755 PSME1Q06323 249 aa21.3■■□□□ 1
LSM1-203ENST00000520755 CDCA8Q53HL2 280 aa21.3■■□□□ 1
LSM1-203ENST00000520755 TMC1Q8TDI8 760 aa21.3■■□□□ 1
LSM1-203ENST00000520755 NRKQ7Z2Y5 1582 aa21.3■■□□□ 1
LSM1-203ENST00000520755 SOS2Q07890 1332 aaPredicted RBP21.29■■□□□ 1
LSM1-203ENST00000520755 CD163L1Q9NR16 1453 aa21.29■■□□□ 1
LSM1-203ENST00000520755 KRT28Q7Z3Y7 464 aa21.29■■□□□ 1
LSM1-203ENST00000520755 PUS7Q96PZ0 661 aaKnown RBP21.29■■□□□ 1
LSM1-203ENST00000520755 POLR3GLQ9BT43 218 aa21.29■■□□□ 1
LSM1-203ENST00000520755 TRPM3Q9HCF6 1732 aaPredicted RBP21.28■■□□□ 1
LSM1-203ENST00000520755 POLR3AO14802 1390 aaPredicted RBP21.27■■□□□ 1
LSM1-203ENST00000520755 SHPRHQ149N8 1683 aa21.25■□□□□ 0.99
LSM1-203ENST00000520755 LRRC59Q96AG4 307 aaKnown RBP21.25■□□□□ 0.99
LSM1-203ENST00000520755 SLC12A5Q9H2X9 1139 aa21.25■□□□□ 0.99
LSM1-203ENST00000520755 NINLQ9Y2I6 1382 aa21.23■□□□□ 0.99
LSM1-203ENST00000520755 JCADQ9P266 1359 aa21.23■□□□□ 0.99
LSM1-203ENST00000520755 KIF20BQ96Q89 1820 aa21.22■□□□□ 0.99
LSM1-203ENST00000520755 ALS2Q96Q42 1657 aa21.22■□□□□ 0.99
LSM1-203ENST00000520755 PAK3O75914 559 aaPredicted RBP21.22■□□□□ 0.99
LSM1-203ENST00000520755 SBNO1A3KN83 1393 aa21.22■□□□□ 0.99
LSM1-203ENST00000520755 TNS3Q68CZ2 1445 aa21.21■□□□□ 0.99
LSM1-203ENST00000520755 LMOD2Q6P5Q4 547 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 127.5 ms