RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 SCAF1Q9H7N4 1312 aaKnown RBP20.35■□□□□ 0.85
NUP54-216ENST00000514901 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.35■□□□□ 0.85
NUP54-216ENST00000514901 ROCK2O75116 1388 aaKnown RBP20.34■□□□□ 0.85
NUP54-216ENST00000514901 PLEKHH1Q9ULM0 1364 aa20.34■□□□□ 0.85
NUP54-216ENST00000514901 TRPM1Q7Z4N2 1603 aa20.31■□□□□ 0.84
NUP54-216ENST00000514901 GPRASP1Q5JY77 1395 aa20.3■□□□□ 0.84
NUP54-216ENST00000514901 SAFB2Q14151 953 aaKnown RBP eCLIP20.29■□□□□ 0.84
NUP54-216ENST00000514901 NALCNQ8IZF0 1738 aa20.29■□□□□ 0.84
NUP54-216ENST00000514901 RALGAPBQ86X10 1494 aa20.27■□□□□ 0.84
NUP54-216ENST00000514901 CARD11Q9BXL7 1154 aa20.27■□□□□ 0.84
NUP54-216ENST00000514901 MST1RQ04912 1400 aa20.27■□□□□ 0.83
NUP54-216ENST00000514901 CDC42BPGQ6DT37 1551 aa20.25■□□□□ 0.83
NUP54-216ENST00000514901 CENPJQ9HC77 1338 aaPredicted RBP20.25■□□□□ 0.83
NUP54-216ENST00000514901 EIF3AQ14152 1382 aaKnown RBP20.24■□□□□ 0.83
NUP54-216ENST00000514901 ARHGEF28Q8N1W1 1705 aaKnown RBP20.24■□□□□ 0.83
NUP54-216ENST00000514901 MINK1Q8N4C8 1332 aaPredicted RBP20.24■□□□□ 0.83
NUP54-216ENST00000514901 C1orf167Q5SNV9 1468 aa20.23■□□□□ 0.83
NUP54-216ENST00000514901 HSPA1LP34931 641 aa20.22■□□□□ 0.83
NUP54-216ENST00000514901 BRINP3Q76B58 766 aa20.22■□□□□ 0.83
NUP54-216ENST00000514901 WASLO00401 505 aaPredicted RBP20.21■□□□□ 0.83
NUP54-216ENST00000514901 HIRIP3Q9BW71 556 aaPredicted RBP20.21■□□□□ 0.83
NUP54-216ENST00000514901 ROBO1Q9Y6N7 1651 aa20.2■□□□□ 0.82
NUP54-216ENST00000514901 ADGRB2O60241 1585 aa20.2■□□□□ 0.82
NUP54-216ENST00000514901 ESCO1Q5FWF5 840 aa20.18■□□□□ 0.82
NUP54-216ENST00000514901 NUTM2FA1L443 756 aa20.17■□□□□ 0.82
NUP54-216ENST00000514901 ORAI2Q96SN7 254 aa20.17■□□□□ 0.82
NUP54-216ENST00000514901 SLC24A1O60721 1099 aa20.16■□□□□ 0.82
NUP54-216ENST00000514901 CDK19Q9BWU1 502 aa20.16■□□□□ 0.82
NUP54-216ENST00000514901 ANKARQ7Z5J8 1434 aa20.16■□□□□ 0.82
NUP54-216ENST00000514901 FMN2Q9NZ56 1722 aa20.16■□□□□ 0.82
NUP54-216ENST00000514901 EVC2Q86UK5 1308 aa20.13■□□□□ 0.81
NUP54-216ENST00000514901 SBNO2Q9Y2G9 1366 aa20.12■□□□□ 0.81
NUP54-216ENST00000514901 NPHP3Q7Z494 1330 aa20.11■□□□□ 0.81
NUP54-216ENST00000514901 NUDT16Q96DE0 195 aaKnown RBP20.11■□□□□ 0.81
NUP54-216ENST00000514901 PHF8Q9UPP1 1060 aa20.11■□□□□ 0.81
NUP54-216ENST00000514901 AHDC1Q5TGY3 1603 aaPredicted RBP20.11■□□□□ 0.81
NUP54-216ENST00000514901 TULP4Q9NRJ4 1543 aa20.11■□□□□ 0.81
NUP54-216ENST00000514901 QRICH2Q9H0J4 1663 aa20.1■□□□□ 0.81
NUP54-216ENST00000514901 SRPK2P78362 688 aaKnown RBP20.1■□□□□ 0.81
NUP54-216ENST00000514901 ST20-MTHFSA0A0A6YYL1 179 aa20.09■□□□□ 0.81
NUP54-216ENST00000514901 CCDC61Q9Y6R9 512 aa20.09■□□□□ 0.81
NUP54-216ENST00000514901 USP47Q96K76 1375 aa20.08■□□□□ 0.81
NUP54-216ENST00000514901 PRR36Q9H6K5 1346 aa20.08■□□□□ 0.81
NUP54-216ENST00000514901 PHLPP1O60346 1717 aa20.08■□□□□ 0.81
NUP54-216ENST00000514901 FOXO3O43524 673 aa20.08■□□□□ 0.81
NUP54-216ENST00000514901 LRRC59Q96AG4 307 aaKnown RBP20.08■□□□□ 0.81
NUP54-216ENST00000514901 SOS2Q07890 1332 aaPredicted RBP20.07■□□□□ 0.8
NUP54-216ENST00000514901 NHSL1Q5SYE7 1610 aa20.06■□□□□ 0.8
NUP54-216ENST00000514901 DDX17Q92841 729 aaKnown RBP20.06■□□□□ 0.8
NUP54-216ENST00000514901 CABP2Q9NPB3 220 aa20.06■□□□□ 0.8
NUP54-216ENST00000514901 RGPD8O14715 1765 aaPredicted RBP20.06■□□□□ 0.8
NUP54-216ENST00000514901 PSME1Q06323 249 aa20.05■□□□□ 0.8
NUP54-216ENST00000514901 PMFBP1Q8TBY8 1022 aa20.05■□□□□ 0.8
NUP54-216ENST00000514901 PUS7Q96PZ0 661 aaKnown RBP20.05■□□□□ 0.8
NUP54-216ENST00000514901 KIF1AQ12756 1690 aa20.05■□□□□ 0.8
NUP54-216ENST00000514901 JCADQ9P266 1359 aa20.05■□□□□ 0.8
NUP54-216ENST00000514901 USP32Q8NFA0 1604 aa20.05■□□□□ 0.8
NUP54-216ENST00000514901 PLEKHG3A1L390 1219 aa20.04■□□□□ 0.8
NUP54-216ENST00000514901 TESK2Q96S53 571 aa20.04■□□□□ 0.8
NUP54-216ENST00000514901 ATP7BP35670 1465 aa20.04■□□□□ 0.8
NUP54-216ENST00000514901 COL16A1Q07092 1604 aaPredicted RBP20.03■□□□□ 0.8
NUP54-216ENST00000514901 KRT28Q7Z3Y7 464 aa20.03■□□□□ 0.8
NUP54-216ENST00000514901 NGDNQ8NEJ9 315 aaKnown RBP20.03■□□□□ 0.8
NUP54-216ENST00000514901 EIF4G2P78344 907 aaKnown RBP eCLIP20.02■□□□□ 0.8
NUP54-216ENST00000514901 ATAD2Q6PL18 1390 aa20.01■□□□□ 0.79
NUP54-216ENST00000514901 ITSN1Q15811 1721 aa20■□□□□ 0.79
NUP54-216ENST00000514901 TMF1P82094 1093 aa20■□□□□ 0.79
NUP54-216ENST00000514901 CDCA8Q53HL2 280 aa19.99■□□□□ 0.79
NUP54-216ENST00000514901 PXDNQ92626 1479 aa19.99■□□□□ 0.79
NUP54-216ENST00000514901 XPCQ01831 940 aaPredicted RBP19.98■□□□□ 0.79
NUP54-216ENST00000514901 CABP1Q9NZU7 370 aa19.98■□□□□ 0.79
NUP54-216ENST00000514901 PPIP5K1Q6PFW1 1433 aa19.98■□□□□ 0.79
NUP54-216ENST00000514901 SPATA31A6Q5VVP1 1343 aa19.98■□□□□ 0.79
NUP54-216ENST00000514901 SBNO1A3KN83 1393 aa19.97■□□□□ 0.79
NUP54-216ENST00000514901 POLR3AO14802 1390 aaPredicted RBP19.97■□□□□ 0.79
NUP54-216ENST00000514901 ACEP12821 1306 aa19.97■□□□□ 0.79
NUP54-216ENST00000514901 SPATA31A3Q5VYP0 1347 aa19.96■□□□□ 0.79
NUP54-216ENST00000514901 ZNF692Q9BU19 519 aaPredicted RBP19.95■□□□□ 0.78
NUP54-216ENST00000514901 TOPAZ1Q8N9V7 1692 aa19.94■□□□□ 0.78
NUP54-216ENST00000514901 HSPA5P11021 654 aaKnown RBP19.94■□□□□ 0.78
NUP54-216ENST00000514901 PNPLA6Q8IY17 1366 aa19.94■□□□□ 0.78
NUP54-216ENST00000514901 SHPRHQ149N8 1683 aa19.93■□□□□ 0.78
NUP54-216ENST00000514901 BRD4O60885 1362 aaPredicted RBP19.93■□□□□ 0.78
NUP54-216ENST00000514901 ARHGEF10O15013 1369 aa19.92■□□□□ 0.78
NUP54-216ENST00000514901 TMC1Q8TDI8 760 aa19.91■□□□□ 0.78
NUP54-216ENST00000514901 NINLQ9Y2I6 1382 aa19.91■□□□□ 0.78
NUP54-216ENST00000514901 TNS3Q68CZ2 1445 aa19.91■□□□□ 0.78
NUP54-216ENST00000514901 PAK3O75914 559 aaPredicted RBP19.9■□□□□ 0.78
NUP54-216ENST00000514901 LMOD2Q6P5Q4 547 aa19.89■□□□□ 0.77
NUP54-216ENST00000514901 DISP3Q9P2K9 1392 aa19.89■□□□□ 0.77
NUP54-216ENST00000514901 ZEB1P37275 1124 aaPredicted RBP19.88■□□□□ 0.77
NUP54-216ENST00000514901 SLC12A5Q9H2X9 1139 aa19.88■□□□□ 0.77
NUP54-216ENST00000514901 TERF2IPQ9NYB0 399 aa19.88■□□□□ 0.77
NUP54-216ENST00000514901 NUTM2BA6NNL0 878 aaPredicted RBP19.87■□□□□ 0.77
NUP54-216ENST00000514901 NUTM2EB1AL46 878 aaPredicted RBP19.87■□□□□ 0.77
NUP54-216ENST00000514901 HDGFL2Q7Z4V5 671 aaPredicted RBP19.87■□□□□ 0.77
NUP54-216ENST00000514901 NUTM2AQ8IVF1 878 aaPredicted RBP19.87■□□□□ 0.77
NUP54-216ENST00000514901 USP6P35125 1406 aa19.85■□□□□ 0.77
NUP54-216ENST00000514901 CPSF1Q10570 1443 aaKnown RBP19.85■□□□□ 0.77
NUP54-216ENST00000514901 MEX3CQ5U5Q3 659 aaKnown RBP19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms