RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CFAP99D6REC4 459 aa13.43□□□□□ -0.26
NUP54-215ENST00000514313 GPR37L1O60883 481 aa13.43□□□□□ -0.26
NUP54-215ENST00000514313 HELBQ8NG08 1087 aaPredicted RBP13.43□□□□□ -0.26
NUP54-215ENST00000514313 C6orf229H3BNL8 230 aa13.42□□□□□ -0.26
NUP54-215ENST00000514313 PBX2P40425 430 aa13.42□□□□□ -0.26
NUP54-215ENST00000514313 LRRN4Q8WUT4 740 aa13.42□□□□□ -0.26
NUP54-215ENST00000514313 RNF40O75150 1001 aa13.41□□□□□ -0.26
NUP54-215ENST00000514313 GRIPAP1Q4V328 841 aa13.41□□□□□ -0.26
NUP54-215ENST00000514313 LAPTM4BQ86VI4 370 aa13.39□□□□□ -0.27
NUP54-215ENST00000514313 ATP6V1AP38606 617 aa13.38□□□□□ -0.27
NUP54-215ENST00000514313 EMP3P54852 163 aa13.38□□□□□ -0.27
NUP54-215ENST00000514313 NECTIN2Q92692 538 aa13.38□□□□□ -0.27
NUP54-215ENST00000514313 SYMPKQ92797 1274 aaKnown RBP13.38□□□□□ -0.27
NUP54-215ENST00000514313 NBPF3Q9H094 633 aa13.38□□□□□ -0.27
NUP54-215ENST00000514313 ADAMTS19Q8TE59 1207 aa13.37□□□□□ -0.27
NUP54-215ENST00000514313 RETREG2Q8NC44 543 aa13.36□□□□□ -0.27
NUP54-215ENST00000514313 BHMG1C9JSJ3 638 aaPredicted RBP13.35□□□□□ -0.27
NUP54-215ENST00000514313 ST18O60284 1047 aa13.35□□□□□ -0.27
NUP54-215ENST00000514313 ZNF687Q8N1G0 1237 aa13.35□□□□□ -0.27
NUP54-215ENST00000514313 EPS8L1Q8TE68 723 aa13.35□□□□□ -0.27
NUP54-215ENST00000514313 MARVELD3Q96A59 401 aa13.35□□□□□ -0.27
NUP54-215ENST00000514313 TRAIPQ9BWF2 469 aa13.35□□□□□ -0.27
NUP54-215ENST00000514313 WASHC4Q2M389 1173 aa13.34□□□□□ -0.27
NUP54-215ENST00000514313 KMT5BQ4FZB7 885 aa13.34□□□□□ -0.27
NUP54-215ENST00000514313 PRR7Q8TB68 274 aa13.34□□□□□ -0.27
NUP54-215ENST00000514313 ZFRQ96KR1 1074 aaKnown RBP13.34□□□□□ -0.27
NUP54-215ENST00000514313 ZBTB7CA1YPR0 619 aa13.33□□□□□ -0.28
NUP54-215ENST00000514313 VAC14Q08AM6 782 aa13.33□□□□□ -0.28
NUP54-215ENST00000514313 HDGFL1Q5TGJ6 251 aa13.32□□□□□ -0.28
NUP54-215ENST00000514313 FAM205CA6NFA0 338 aa13.31□□□□□ -0.28
NUP54-215ENST00000514313 MORN1Q5T089 497 aa13.31□□□□□ -0.28
NUP54-215ENST00000514313 PER1O15534 1290 aaPredicted RBP13.3□□□□□ -0.28
NUP54-215ENST00000514313 PPP1R15AO75807 674 aaPredicted RBP13.3□□□□□ -0.28
NUP54-215ENST00000514313 PUS10Q3MIT2 529 aaKnown RBP13.3□□□□□ -0.28
NUP54-215ENST00000514313 RETREG3Q86VR2 466 aa13.29□□□□□ -0.28
NUP54-215ENST00000514313 TK2O00142 265 aa13.28□□□□□ -0.28
NUP54-215ENST00000514313 NR6A1Q15406 480 aa13.28□□□□□ -0.28
NUP54-215ENST00000514313 MRPL50Q8N5N7 158 aaKnown RBP13.28□□□□□ -0.28
NUP54-215ENST00000514313 SLC27A5Q9Y2P5 690 aa13.28□□□□□ -0.28
NUP54-215ENST00000514313 ACTN4O43707 911 aaKnown RBP13.27□□□□□ -0.29
NUP54-215ENST00000514313 LRCH3Q96II8 777 aa13.27□□□□□ -0.29
NUP54-215ENST00000514313 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.25□□□□□ -0.29
NUP54-215ENST00000514313 POTEB3A0JP26 581 aa13.24□□□□□ -0.29
NUP54-215ENST00000514313 Q3C1V9 767 aa13.24□□□□□ -0.29
NUP54-215ENST00000514313 CFAP70Q5T0N1 1121 aa13.24□□□□□ -0.29
NUP54-215ENST00000514313 POTEBQ6S5H4 581 aa13.24□□□□□ -0.29
NUP54-215ENST00000514313 ALG2Q9H553 416 aa13.24□□□□□ -0.29
NUP54-215ENST00000514313 RFX1P22670 979 aa13.23□□□□□ -0.29
NUP54-215ENST00000514313 ADGRD1Q6QNK2 874 aa13.23□□□□□ -0.29
NUP54-215ENST00000514313 RNF19BQ6ZMZ0 732 aa13.23□□□□□ -0.29
NUP54-215ENST00000514313 PBXIP1Q96AQ6 731 aa13.23□□□□□ -0.29
NUP54-215ENST00000514313 HS3ST6Q96QI5 342 aa13.23□□□□□ -0.29
NUP54-215ENST00000514313 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.22□□□□□ -0.29
NUP54-215ENST00000514313 DESI1Q6ICB0 168 aa13.22□□□□□ -0.29
NUP54-215ENST00000514313 KCTD17Q8N5Z5 321 aa13.22□□□□□ -0.29
NUP54-215ENST00000514313 BLOC1S3Q6QNY0 202 aa13.21□□□□□ -0.29
NUP54-215ENST00000514313 PPP1R12CQ9BZL4 782 aa13.21□□□□□ -0.29
NUP54-215ENST00000514313 LSM11P83369 360 aaKnown RBP eCLIP13.2□□□□□ -0.3
NUP54-215ENST00000514313 AEBP1Q8IUX7 1158 aa13.2□□□□□ -0.3
NUP54-215ENST00000514313 UCN2Q96RP3 112 aa13.2□□□□□ -0.3
NUP54-215ENST00000514313 ACIN1Q9UKV3 1341 aaKnown RBP13.19□□□□□ -0.3
NUP54-215ENST00000514313 PRR14Q9BWN1 585 aa13.19□□□□□ -0.3
NUP54-215ENST00000514313 HRO43593 1189 aa13.18□□□□□ -0.3
NUP54-215ENST00000514313 SOX11P35716 441 aa13.18□□□□□ -0.3
NUP54-215ENST00000514313 LYPD8Q6UX82 237 aa13.18□□□□□ -0.3
NUP54-215ENST00000514313 PALM3A6NDB9 673 aaPredicted RBP13.17□□□□□ -0.3
NUP54-215ENST00000514313 SRPK2P78362 688 aaKnown RBP13.16□□□□□ -0.3
NUP54-215ENST00000514313 ANKK1Q8NFD2 765 aa13.16□□□□□ -0.3
NUP54-215ENST00000514313 USB1Q9BQ65 265 aaKnown RBP13.16□□□□□ -0.3
NUP54-215ENST00000514313 APLP1P51693 650 aa13.15□□□□□ -0.3
NUP54-215ENST00000514313 HPS5Q9UPZ3 1129 aa13.15□□□□□ -0.3
NUP54-215ENST00000514313 BCAMP50895 628 aa13.14□□□□□ -0.31
NUP54-215ENST00000514313 BRICD5Q6PL45 260 aa13.14□□□□□ -0.31
NUP54-215ENST00000514313 CCDC9Q9Y3X0 531 aaKnown RBP13.14□□□□□ -0.31
NUP54-215ENST00000514313 SOWAHBA6NEL2 793 aa13.13□□□□□ -0.31
NUP54-215ENST00000514313 PPP4CP60510 307 aa13.13□□□□□ -0.31
NUP54-215ENST00000514313 SEMA3FQ13275 785 aa13.13□□□□□ -0.31
NUP54-215ENST00000514313 PNMA1Q8ND90 353 aa13.13□□□□□ -0.31
NUP54-215ENST00000514313 SALL2Q9Y467 1007 aaPredicted RBP13.13□□□□□ -0.31
NUP54-215ENST00000514313 LMOD1P29536 600 aaPredicted RBP13.12□□□□□ -0.31
NUP54-215ENST00000514313 TFIP11Q9UBB9 837 aaKnown RBP13.12□□□□□ -0.31
NUP54-215ENST00000514313 GOLGA8CPA6NN73 597 aa13.11□□□□□ -0.31
NUP54-215ENST00000514313 F12P00748 615 aaPredicted RBP13.11□□□□□ -0.31
NUP54-215ENST00000514313 THAP11Q96EK4 314 aa13.11□□□□□ -0.31
NUP54-215ENST00000514313 PCDHB3Q9Y5E6 796 aa13.11□□□□□ -0.31
NUP54-215ENST00000514313 FBXO45P0C2W1 286 aa13.1□□□□□ -0.31
NUP54-215ENST00000514313 EIF4G2P78344 907 aaKnown RBP eCLIP13.1□□□□□ -0.31
NUP54-215ENST00000514313 NR1H3Q13133 447 aa13.1□□□□□ -0.31
NUP54-215ENST00000514313 SCUBE3Q8IX30 993 aa13.1□□□□□ -0.31
NUP54-215ENST00000514313 FAM163AQ96GL9 167 aaPredicted RBP13.1□□□□□ -0.31
NUP54-215ENST00000514313 MAP10Q9P2G4 905 aa13.1□□□□□ -0.31
NUP54-215ENST00000514313 FMNL1O95466 1100 aaPredicted RBP13.09□□□□□ -0.31
NUP54-215ENST00000514313 TSR3Q9UJK0 312 aaKnown RBP13.09□□□□□ -0.31
NUP54-215ENST00000514313 MAFBQ9Y5Q3 323 aaPredicted RBP13.09□□□□□ -0.31
NUP54-215ENST00000514313 JUNDP17535 347 aa13.08□□□□□ -0.32
NUP54-215ENST00000514313 PDE4CQ08493 712 aa13.08□□□□□ -0.32
NUP54-215ENST00000514313 TBC1D9Q6ZT07 1266 aa13.08□□□□□ -0.32
NUP54-215ENST00000514313 FKBPLQ9UIM3 349 aa13.08□□□□□ -0.32
NUP54-215ENST00000514313 USTQ9Y2C2 406 aa13.08□□□□□ -0.32
NUP54-215ENST00000514313 NR1I2O75469 434 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms