RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 CTC1Q2NKJ3 1217 aa8.65□□□□□ -1.02
NUP54-212ENST00000513248 BARGINQ6ZT62 677 aa8.65□□□□□ -1.02
NUP54-212ENST00000513248 PHOX2BQ99453 314 aa8.65□□□□□ -1.02
NUP54-212ENST00000513248 SMCPP49901 116 aaPredicted RBP8.63□□□□□ -1.03
NUP54-212ENST00000513248 Q3C1V9 767 aa8.63□□□□□ -1.03
NUP54-212ENST00000513248 CYP4X1Q8N118 509 aa8.63□□□□□ -1.03
NUP54-212ENST00000513248 NLRP7Q8WX94 980 aa8.63□□□□□ -1.03
NUP54-212ENST00000513248 MAP2K5Q13163 448 aa8.62□□□□□ -1.03
NUP54-212ENST00000513248 PRDM9Q9NQV7 894 aa8.62□□□□□ -1.03
NUP54-212ENST00000513248 ZBTB24O43167 697 aaPredicted RBP8.61□□□□□ -1.03
NUP54-212ENST00000513248 LCE2AQ5TA79 106 aaPredicted RBP8.61□□□□□ -1.03
NUP54-212ENST00000513248 TREML4Q6UXN2 200 aa8.61□□□□□ -1.03
NUP54-212ENST00000513248 AXIN1O15169 862 aa8.6□□□□□ -1.03
NUP54-212ENST00000513248 MMP16P51512 607 aa8.6□□□□□ -1.03
NUP54-212ENST00000513248 RNF19BQ6ZMZ0 732 aa8.6□□□□□ -1.03
NUP54-212ENST00000513248 WNT7AO00755 349 aa8.59□□□□□ -1.03
NUP54-212ENST00000513248 CD46P15529 392 aa8.59□□□□□ -1.03
NUP54-212ENST00000513248 MINK1Q8N4C8 1332 aaPredicted RBP8.58□□□□□ -1.04
NUP54-212ENST00000513248 IRF6O14896 467 aa8.57□□□□□ -1.04
NUP54-212ENST00000513248 USP46P62068 366 aa8.57□□□□□ -1.04
NUP54-212ENST00000513248 TRIM32Q13049 653 aa8.57□□□□□ -1.04
NUP54-212ENST00000513248 TTC24A2A3L6 582 aaPredicted RBP8.56□□□□□ -1.04
NUP54-212ENST00000513248 KDM4AO75164 1064 aa8.56□□□□□ -1.04
NUP54-212ENST00000513248 DXOO77932 396 aaKnown RBP8.56□□□□□ -1.04
NUP54-212ENST00000513248 SNIP1Q8TAD8 396 aaKnown RBP8.56□□□□□ -1.04
NUP54-212ENST00000513248 CCDC102AQ96A19 550 aa8.56□□□□□ -1.04
NUP54-212ENST00000513248 DACH1Q9UI36 760 aa8.56□□□□□ -1.04
NUP54-212ENST00000513248 USB1Q9BQ65 265 aaKnown RBP8.55□□□□□ -1.04
NUP54-212ENST00000513248 REPIN1Q9BWE0 567 aaKnown RBP8.55□□□□□ -1.04
NUP54-212ENST00000513248 C11orf95C9JLR9 678 aaPredicted RBP8.54□□□□□ -1.04
NUP54-212ENST00000513248 KRI1Q8N9T8 703 aaKnown RBP8.54□□□□□ -1.04
NUP54-212ENST00000513248 GMPR2Q9P2T1 348 aaKnown RBP8.54□□□□□ -1.04
NUP54-212ENST00000513248 SMPD1P17405 629 aa8.53□□□□□ -1.04
NUP54-212ENST00000513248 SLC24A3Q9HC58 644 aa8.53□□□□□ -1.04
NUP54-212ENST00000513248 WFS1O76024 890 aa8.51□□□□□ -1.05
NUP54-212ENST00000513248 MRGPRX2Q96LB1 330 aa8.51□□□□□ -1.05
NUP54-212ENST00000513248 WNT7BP56706 349 aa8.5□□□□□ -1.05
NUP54-212ENST00000513248 HOXA2O43364 376 aa8.49□□□□□ -1.05
NUP54-212ENST00000513248 AK7Q96M32 723 aa8.49□□□□□ -1.05
NUP54-212ENST00000513248 ATP13A2Q9NQ11 1180 aa8.49□□□□□ -1.05
NUP54-212ENST00000513248 TRIM66O15016 1216 aa8.48□□□□□ -1.05
NUP54-212ENST00000513248 MDM2Q00987 491 aaPredicted RBP8.48□□□□□ -1.05
NUP54-212ENST00000513248 NFX1Q12986 1120 aaKnown RBP8.48□□□□□ -1.05
NUP54-212ENST00000513248 SENP2Q9HC62 589 aa8.48□□□□□ -1.05
NUP54-212ENST00000513248 J3QL48 77 aa8.47□□□□□ -1.05
NUP54-212ENST00000513248 WIPF1O43516 503 aa8.47□□□□□ -1.05
NUP54-212ENST00000513248 TRIM47Q96LD4 638 aa8.47□□□□□ -1.05
NUP54-212ENST00000513248 CLCN1P35523 988 aa8.46□□□□□ -1.06
NUP54-212ENST00000513248 AMHR2Q16671 573 aa8.46□□□□□ -1.06
NUP54-212ENST00000513248 GPCPD1Q9NPB8 672 aa8.46□□□□□ -1.06
NUP54-212ENST00000513248 JUNDP17535 347 aa8.45□□□□□ -1.06
NUP54-212ENST00000513248 RC3H1Q5TC82 1133 aaKnown RBP8.45□□□□□ -1.06
NUP54-212ENST00000513248 HLA-CQ95604 372 aa8.45□□□□□ -1.06
NUP54-212ENST00000513248 KIFC2Q96AC6 838 aa8.45□□□□□ -1.06
NUP54-212ENST00000513248 SKOR1P84550 965 aa8.44□□□□□ -1.06
NUP54-212ENST00000513248 CCDC24Q8N4L8 307 aa8.44□□□□□ -1.06
NUP54-212ENST00000513248 FAM217BQ9NTX9 383 aaPredicted RBP8.44□□□□□ -1.06
NUP54-212ENST00000513248 RETREG3Q86VR2 466 aa8.43□□□□□ -1.06
NUP54-212ENST00000513248 HPS1Q92902 700 aa8.43□□□□□ -1.06
NUP54-212ENST00000513248 STK17AQ9UEE5 414 aa8.43□□□□□ -1.06
NUP54-212ENST00000513248 TTLL12Q14166 644 aaPredicted RBP8.42□□□□□ -1.06
NUP54-212ENST00000513248 SNRPBP14678 240 aaKnown RBP8.41□□□□□ -1.06
NUP54-212ENST00000513248 BRPF1P55201 1214 aaPredicted RBP8.41□□□□□ -1.06
NUP54-212ENST00000513248 INSM1Q01101 510 aaPredicted RBP8.41□□□□□ -1.06
NUP54-212ENST00000513248 TERTO14746 1132 aaKnown RBP8.4□□□□□ -1.06
NUP54-212ENST00000513248 GUCA2AQ02747 115 aa8.4□□□□□ -1.06
NUP54-212ENST00000513248 PDE4DQ08499 809 aa8.4□□□□□ -1.06
NUP54-212ENST00000513248 NUTM1Q86Y26 1132 aa8.4□□□□□ -1.06
NUP54-212ENST00000513248 NUDT12Q9BQG2 462 aa8.4□□□□□ -1.06
NUP54-212ENST00000513248 SIAH2O43255 324 aa8.39□□□□□ -1.07
NUP54-212ENST00000513248 PARP9Q8IXQ6 854 aa8.38□□□□□ -1.07
NUP54-212ENST00000513248 ALDH1A1P00352 501 aa8.37□□□□□ -1.07
NUP54-212ENST00000513248 FDX1P10109 184 aa8.37□□□□□ -1.07
NUP54-212ENST00000513248 GIGYF2Q6Y7W6 1299 aaKnown RBP8.37□□□□□ -1.07
NUP54-212ENST00000513248 SYMPKQ92797 1274 aaKnown RBP8.37□□□□□ -1.07
NUP54-212ENST00000513248 CCNYL3P0C7X3 344 aa8.36□□□□□ -1.07
NUP54-212ENST00000513248 PTCRAQ6ISU1 281 aaPredicted RBP8.36□□□□□ -1.07
NUP54-212ENST00000513248 EHBP1Q8NDI1 1231 aa8.36□□□□□ -1.07
NUP54-212ENST00000513248 MS4A1P11836 297 aa8.35□□□□□ -1.07
NUP54-212ENST00000513248 SSTR3P32745 418 aaPredicted RBP8.35□□□□□ -1.07
NUP54-212ENST00000513248 PTPRNQ16849 979 aa8.35□□□□□ -1.07
NUP54-212ENST00000513248 LCE2CQ5TA81 110 aa8.35□□□□□ -1.07
NUP54-212ENST00000513248 NPAS3Q8IXF0 933 aa8.34□□□□□ -1.07
NUP54-212ENST00000513248 PCDHGC3Q9UN70 934 aa8.34□□□□□ -1.07
NUP54-212ENST00000513248 C6orf229H3BNL8 230 aa8.33□□□□□ -1.08
NUP54-212ENST00000513248 SH3BP2P78314 561 aa8.33□□□□□ -1.08
NUP54-212ENST00000513248 GPBP1L1Q9HC44 474 aaPredicted RBP8.33□□□□□ -1.08
NUP54-212ENST00000513248 EVA1BQ9NVM1 165 aa8.33□□□□□ -1.08
NUP54-212ENST00000513248 WASF2Q9Y6W5 498 aa8.33□□□□□ -1.08
NUP54-212ENST00000513248 SPDYE5A6NIY4 337 aa8.32□□□□□ -1.08
NUP54-212ENST00000513248 CAPN5O15484 640 aaPredicted RBP8.32□□□□□ -1.08
NUP54-212ENST00000513248 DESI1Q6ICB0 168 aa8.32□□□□□ -1.08
NUP54-212ENST00000513248 MPNDQ8N594 471 aa8.32□□□□□ -1.08
NUP54-212ENST00000513248 SLC16A10Q8TF71 515 aa8.32□□□□□ -1.08
NUP54-212ENST00000513248 KDM4CQ9H3R0 1056 aa8.32□□□□□ -1.08
NUP54-212ENST00000513248 SPIRE2Q8WWL2 714 aa8.31□□□□□ -1.08
NUP54-212ENST00000513248 UNC93B1Q9H1C4 597 aa8.31□□□□□ -1.08
NUP54-212ENST00000513248 NXF1Q9UBU9 619 aaKnown RBP8.31□□□□□ -1.08
NUP54-212ENST00000513248 GJA5P36382 358 aa8.3□□□□□ -1.08
NUP54-212ENST00000513248 TRIM46Q7Z4K8 759 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms