RNA–Protein interactions for RNA: ENST00000513098.5

UBE2D3-231, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 3

Gene UBE2D3, Length 702 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-231	ENST00000513098	NRXN1	Q9ULB1	1477 aa		18.57	■□□□□ 0.56
UBE2D3-231	ENST00000513098	PNPLA6	Q8IY17	1366 aa		18.55	■□□□□ 0.56
UBE2D3-231	ENST00000513098	TMEM132E	Q6IEE7	984 aa		18.55	■□□□□ 0.56
UBE2D3-231	ENST00000513098	WAPL	Q7Z5K2	1190 aa		18.54	■□□□□ 0.56
UBE2D3-231	ENST00000513098	STK26	Q9P289	416 aa		18.54	■□□□□ 0.56
UBE2D3-231	ENST00000513098	NUTM2B	A6NNL0	878 aa	Predicted RBP	18.53	■□□□□ 0.56
UBE2D3-231	ENST00000513098	NUTM2E	B1AL46	878 aa	Predicted RBP	18.53	■□□□□ 0.56
UBE2D3-231	ENST00000513098	CDC42BPG	Q6DT37	1551 aa		18.53	■□□□□ 0.56
UBE2D3-231	ENST00000513098	NUTM2A	Q8IVF1	878 aa	Predicted RBP	18.53	■□□□□ 0.56
UBE2D3-231	ENST00000513098	YTHDC2	Q9H6S0	1430 aa	Known RBP	18.53	■□□□□ 0.56
UBE2D3-231	ENST00000513098	MYOM2	P54296	1465 aa		18.52	■□□□□ 0.56
UBE2D3-231	ENST00000513098	STAC3	Q96MF2	364 aa		18.51	■□□□□ 0.55
UBE2D3-231	ENST00000513098	KNDC1	Q76NI1	1749 aa		18.51	■□□□□ 0.55
UBE2D3-231	ENST00000513098	ESCO1	Q5FWF5	840 aa		18.5	■□□□□ 0.55
UBE2D3-231	ENST00000513098	NPHP3	Q7Z494	1330 aa		18.49	■□□□□ 0.55
UBE2D3-231	ENST00000513098	CFAP70	Q5T0N1	1121 aa		18.49	■□□□□ 0.55
UBE2D3-231	ENST00000513098	DHX57	Q6P158	1386 aa	Known RBP	18.49	■□□□□ 0.55
UBE2D3-231	ENST00000513098	AFF2	P51816	1311 aa		18.49	■□□□□ 0.55
UBE2D3-231	ENST00000513098	PLEKHH1	Q9ULM0	1364 aa		18.48	■□□□□ 0.55
UBE2D3-231	ENST00000513098	RXRB	P28702	533 aa		18.48	■□□□□ 0.55
UBE2D3-231	ENST00000513098	CDK12	Q9NYV4	1490 aa	Predicted RBP	18.46	■□□□□ 0.54
UBE2D3-231	ENST00000513098	FOXO3	O43524	673 aa		18.45	■□□□□ 0.54
UBE2D3-231	ENST00000513098	C8orf37	Q96NL8	207 aa		18.45	■□□□□ 0.54
UBE2D3-231	ENST00000513098	QTRT2	Q9H974	415 aa	Known RBP	18.44	■□□□□ 0.54
UBE2D3-231	ENST00000513098	PXDN	Q92626	1479 aa		18.44	■□□□□ 0.54
UBE2D3-231	ENST00000513098	COL22A1	Q8NFW1	1626 aa	Predicted RBP	18.43	■□□□□ 0.54
UBE2D3-231	ENST00000513098	FNBP4	Q8N3X1	1017 aa	Predicted RBP	18.43	■□□□□ 0.54
UBE2D3-231	ENST00000513098	NGLY1	Q96IV0	654 aa		18.43	■□□□□ 0.54
UBE2D3-231	ENST00000513098	DLC1	Q96QB1	1528 aa		18.42	■□□□□ 0.54
UBE2D3-231	ENST00000513098	ADAMTS2	O95450	1211 aa		18.41	■□□□□ 0.54
UBE2D3-231	ENST00000513098	RBM6	P78332	1123 aa	Known RBP	18.41	■□□□□ 0.54
UBE2D3-231	ENST00000513098	PRAM1	Q96QH2	718 aa		18.41	■□□□□ 0.54
UBE2D3-231	ENST00000513098	FMN2	Q9NZ56	1722 aa		18.4	■□□□□ 0.54
UBE2D3-231	ENST00000513098	NUTM2F	A1L443	756 aa		18.4	■□□□□ 0.54
UBE2D3-231	ENST00000513098	DCAF11	Q8TEB1	546 aa		18.4	■□□□□ 0.54
UBE2D3-231	ENST00000513098	ADGRB1	O14514	1584 aa		18.39	■□□□□ 0.53
UBE2D3-231	ENST00000513098	UPF1	Q92900	1129 aa	Known RBP eCLIP	18.37	■□□□□ 0.53
UBE2D3-231	ENST00000513098	POGK	Q9P215	609 aa		18.37	■□□□□ 0.53
UBE2D3-231	ENST00000513098	PHF8	Q9UPP1	1060 aa		18.37	■□□□□ 0.53
UBE2D3-231	ENST00000513098	KDM2A	Q9Y2K7	1162 aa		18.37	■□□□□ 0.53
UBE2D3-231	ENST00000513098	SPATA31A3	Q5VYP0	1347 aa		18.37	■□□□□ 0.53
UBE2D3-231	ENST00000513098	XPC	Q01831	940 aa	Predicted RBP	18.36	■□□□□ 0.53
UBE2D3-231	ENST00000513098	KIF1A	Q12756	1690 aa		18.36	■□□□□ 0.53
UBE2D3-231	ENST00000513098	KRT28	Q7Z3Y7	464 aa		18.36	■□□□□ 0.53
UBE2D3-231	ENST00000513098	USP21	Q9UK80	565 aa		18.36	■□□□□ 0.53
UBE2D3-231	ENST00000513098	PSME1	Q06323	249 aa		18.35	■□□□□ 0.53
UBE2D3-231	ENST00000513098	TRPC5	Q9UL62	973 aa	Predicted RBP	18.35	■□□□□ 0.53
UBE2D3-231	ENST00000513098	TRAK1	Q9UPV9	953 aa		18.34	■□□□□ 0.53
UBE2D3-231	ENST00000513098	ANKAR	Q7Z5J8	1434 aa		18.33	■□□□□ 0.53
UBE2D3-231	ENST00000513098	SAFB2	Q14151	953 aa	Known RBP eCLIP	18.33	■□□□□ 0.52
UBE2D3-231	ENST00000513098	SBNO1	A3KN83	1393 aa		18.32	■□□□□ 0.52
UBE2D3-231	ENST00000513098	ADGRB2	O60241	1585 aa		18.32	■□□□□ 0.52
UBE2D3-231	ENST00000513098	RGPD8	O14715	1765 aa	Predicted RBP	18.32	■□□□□ 0.52
UBE2D3-231	ENST00000513098	BCL9L	Q86UU0	1499 aa		18.32	■□□□□ 0.52
UBE2D3-231	ENST00000513098	ATRN	O75882	1429 aa		18.31	■□□□□ 0.52
UBE2D3-231	ENST00000513098	RGS12	O14924	1447 aa		18.3	■□□□□ 0.52
UBE2D3-231	ENST00000513098	WASL	O00401	505 aa	Predicted RBP	18.29	■□□□□ 0.52
UBE2D3-231	ENST00000513098	MARF1	Q9Y4F3	1742 aa	Known RBP	18.29	■□□□□ 0.52
UBE2D3-231	ENST00000513098	EIF3A	Q14152	1382 aa	Known RBP	18.29	■□□□□ 0.52
UBE2D3-231	ENST00000513098	TNS3	Q68CZ2	1445 aa		18.28	■□□□□ 0.52
UBE2D3-231	ENST00000513098	USP32	Q8NFA0	1604 aa		18.27	■□□□□ 0.51
UBE2D3-231	ENST00000513098	UNC5CL	Q8IV45	518 aa		18.26	■□□□□ 0.51
UBE2D3-231	ENST00000513098	HIRIP3	Q9BW71	556 aa	Predicted RBP	18.26	■□□□□ 0.51
UBE2D3-231	ENST00000513098	ARHGEF10	O15013	1369 aa		18.26	■□□□□ 0.51
UBE2D3-231	ENST00000513098	MINK1	Q8N4C8	1332 aa	Predicted RBP	18.25	■□□□□ 0.51
UBE2D3-231	ENST00000513098	PRR36	Q9H6K5	1346 aa		18.25	■□□□□ 0.51
UBE2D3-231	ENST00000513098	SLIT2	O94813	1529 aa		18.25	■□□□□ 0.51
UBE2D3-231	ENST00000513098	PMFBP1	Q8TBY8	1022 aa		18.25	■□□□□ 0.51
UBE2D3-231	ENST00000513098	GJD4	Q96KN9	370 aa	Predicted RBP	18.25	■□□□□ 0.51
UBE2D3-231	ENST00000513098	TULP4	Q9NRJ4	1543 aa		18.23	■□□□□ 0.51
UBE2D3-231	ENST00000513098	EP400	Q96L91	3159 aa		18.23	■□□□□ 0.51
UBE2D3-231	ENST00000513098	KIAA1210	Q9ULL0	1709 aa		18.23	■□□□□ 0.51
UBE2D3-231	ENST00000513098	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	18.22	■□□□□ 0.51
UBE2D3-231	ENST00000513098	GPRASP1	Q5JY77	1395 aa		18.21	■□□□□ 0.51
UBE2D3-231	ENST00000513098	CABLES1	Q8TDN4	633 aa		18.21	■□□□□ 0.51
UBE2D3-231	ENST00000513098	ATAD2	Q6PL18	1390 aa		18.2	■□□□□ 0.5
UBE2D3-231	ENST00000513098	ARHGEF28	Q8N1W1	1705 aa	Known RBP	18.2	■□□□□ 0.5
UBE2D3-231	ENST00000513098	NUDT16	Q96DE0	195 aa	Known RBP	18.19	■□□□□ 0.5
UBE2D3-231	ENST00000513098	TRPM3	Q9HCF6	1732 aa	Predicted RBP	18.18	■□□□□ 0.5
UBE2D3-231	ENST00000513098	FAM83G	A6ND36	823 aa		18.18	■□□□□ 0.5
UBE2D3-231	ENST00000513098	ONECUT3	O60422	494 aa	Predicted RBP	18.18	■□□□□ 0.5
UBE2D3-231	ENST00000513098	HAP1	P54257	671 aa	Predicted RBP	18.18	■□□□□ 0.5
UBE2D3-231	ENST00000513098	VPS72	Q15906	364 aa		18.18	■□□□□ 0.5
UBE2D3-231	ENST00000513098	NBPF1	Q3BBV0	1214 aa		18.18	■□□□□ 0.5
UBE2D3-231	ENST00000513098	LMOD2	Q6P5Q4	547 aa		18.18	■□□□□ 0.5
UBE2D3-231	ENST00000513098	CDK19	Q9BWU1	502 aa		18.18	■□□□□ 0.5
UBE2D3-231	ENST00000513098	CCDC125	Q86Z20	511 aa		18.17	■□□□□ 0.5
UBE2D3-231	ENST00000513098	NGDN	Q8NEJ9	315 aa	Known RBP	18.17	■□□□□ 0.5
UBE2D3-231	ENST00000513098	RALGAPB	Q86X10	1494 aa		18.16	■□□□□ 0.5
UBE2D3-231	ENST00000513098	CCDC61	Q9Y6R9	512 aa		18.16	■□□□□ 0.5
UBE2D3-231	ENST00000513098	ALS2	Q96Q42	1657 aa		18.15	■□□□□ 0.5
UBE2D3-231	ENST00000513098	ATP7B	P35670	1465 aa		18.15	■□□□□ 0.5
UBE2D3-231	ENST00000513098	PLEKHG3	A1L390	1219 aa		18.15	■□□□□ 0.5
UBE2D3-231	ENST00000513098	NWD2	Q9ULI1	1742 aa		18.15	■□□□□ 0.5
UBE2D3-231	ENST00000513098	L3MBTL2	Q969R5	705 aa		18.14	■□□□□ 0.49
UBE2D3-231	ENST00000513098	POLR3A	O14802	1390 aa	Predicted RBP	18.14	■□□□□ 0.49
UBE2D3-231	ENST00000513098	GLI3	P10071	1580 aa		18.13	■□□□□ 0.49
UBE2D3-231	ENST00000513098	ABCA3	Q99758	1704 aa		18.13	■□□□□ 0.49
UBE2D3-231	ENST00000513098	NBPF8	Q3BBV2	869 aa		18.12	■□□□□ 0.49
UBE2D3-231	ENST00000513098	ITSN1	Q15811	1721 aa		18.12	■□□□□ 0.49

Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms