RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 KCNA6P17658 529 aa10.12□□□□□ -0.79
NUP54-204ENST00000506098 TESK2Q96S53 571 aa10.12□□□□□ -0.79
NUP54-204ENST00000506098 AMOTL2Q9Y2J4 779 aa10.12□□□□□ -0.79
NUP54-204ENST00000506098 STK26Q9P289 416 aa10.11□□□□□ -0.79
NUP54-204ENST00000506098 ROBO2Q9HCK4 1378 aa10.11□□□□□ -0.79
NUP54-204ENST00000506098 TOPAZ1Q8N9V7 1692 aa10.1□□□□□ -0.79
NUP54-204ENST00000506098 TULP4Q9NRJ4 1543 aa10.1□□□□□ -0.79
NUP54-204ENST00000506098 AKAP12Q02952 1782 aa10.1□□□□□ -0.79
NUP54-204ENST00000506098 PRAM1Q96QH2 718 aa10.09□□□□□ -0.79
NUP54-204ENST00000506098 HIRIP3Q9BW71 556 aaPredicted RBP10.09□□□□□ -0.79
NUP54-204ENST00000506098 PLEKHH1Q9ULM0 1364 aa10.09□□□□□ -0.79
NUP54-204ENST00000506098 NCOA3Q9Y6Q9 1424 aa10.08□□□□□ -0.8
NUP54-204ENST00000506098 USP32Q8NFA0 1604 aa10.08□□□□□ -0.8
NUP54-204ENST00000506098 WAPLQ7Z5K2 1190 aa10.08□□□□□ -0.8
NUP54-204ENST00000506098 PUS7Q96PZ0 661 aaKnown RBP10.08□□□□□ -0.8
NUP54-204ENST00000506098 CDC42BPGQ6DT37 1551 aa10.08□□□□□ -0.8
NUP54-204ENST00000506098 DISP3Q9P2K9 1392 aa10.07□□□□□ -0.8
NUP54-204ENST00000506098 C11orf95C9JLR9 678 aaPredicted RBP10.07□□□□□ -0.8
NUP54-204ENST00000506098 TMF1P82094 1093 aa10.07□□□□□ -0.8
NUP54-204ENST00000506098 POGKQ9P215 609 aa10.07□□□□□ -0.8
NUP54-204ENST00000506098 LTBP4Q8N2S1 1624 aa10.07□□□□□ -0.8
NUP54-204ENST00000506098 CCDC7Q96M83 1385 aa10.06□□□□□ -0.8
NUP54-204ENST00000506098 LRRC7Q96NW7 1537 aa10.06□□□□□ -0.8
NUP54-204ENST00000506098 WASHC2AQ641Q2 1341 aa10.06□□□□□ -0.8
NUP54-204ENST00000506098 MON2Q7Z3U7 1717 aa10.05□□□□□ -0.8
NUP54-204ENST00000506098 CDCA8Q53HL2 280 aa10.05□□□□□ -0.8
NUP54-204ENST00000506098 ADGRL3Q9HAR2 1447 aa10.05□□□□□ -0.8
NUP54-204ENST00000506098 KIF7Q2M1P5 1343 aa10.05□□□□□ -0.8
NUP54-204ENST00000506098 EVC2Q86UK5 1308 aa10.05□□□□□ -0.8
NUP54-204ENST00000506098 MINK1Q8N4C8 1332 aaPredicted RBP10.04□□□□□ -0.8
NUP54-204ENST00000506098 ZNF335Q9H4Z2 1342 aaPredicted RBP10.04□□□□□ -0.8
NUP54-204ENST00000506098 DCCP43146 1447 aa10.03□□□□□ -0.8
NUP54-204ENST00000506098 SAFB2Q14151 953 aaKnown RBP eCLIP10.03□□□□□ -0.8
NUP54-204ENST00000506098 PROSER2Q86WR7 435 aaPredicted RBP10.03□□□□□ -0.8
NUP54-204ENST00000506098 KIF20BQ96Q89 1820 aa10.03□□□□□ -0.8
NUP54-204ENST00000506098 ANKRD26Q9UPS8 1709 aa10.02□□□□□ -0.8
NUP54-204ENST00000506098 WASLO00401 505 aaPredicted RBP10.02□□□□□ -0.81
NUP54-204ENST00000506098 PIAS4Q8N2W9 510 aaPredicted RBP10.02□□□□□ -0.81
NUP54-204ENST00000506098 CDK19Q9BWU1 502 aa10.02□□□□□ -0.81
NUP54-204ENST00000506098 ATP7BP35670 1465 aa10.02□□□□□ -0.81
NUP54-204ENST00000506098 KIF1AQ12756 1690 aa10.02□□□□□ -0.81
NUP54-204ENST00000506098 TMEM94Q12767 1356 aa10.01□□□□□ -0.81
NUP54-204ENST00000506098 ATAD2Q6PL18 1390 aa10.01□□□□□ -0.81
NUP54-204ENST00000506098 NINLQ9Y2I6 1382 aa10.01□□□□□ -0.81
NUP54-204ENST00000506098 ANKARQ7Z5J8 1434 aa10□□□□□ -0.81
NUP54-204ENST00000506098 C19orf44Q9H6X5 657 aa9.99□□□□□ -0.81
NUP54-204ENST00000506098 NRKQ7Z2Y5 1582 aa9.99□□□□□ -0.81
NUP54-204ENST00000506098 SRPK2P78362 688 aaKnown RBP9.98□□□□□ -0.81
NUP54-204ENST00000506098 CABP2Q9NPB3 220 aa9.98□□□□□ -0.81
NUP54-204ENST00000506098 MAP2P11137 1827 aaKnown RBP9.98□□□□□ -0.81
NUP54-204ENST00000506098 IQSEC2Q5JU85 1478 aa9.98□□□□□ -0.81
NUP54-204ENST00000506098 CD163L1Q9NR16 1453 aa9.98□□□□□ -0.81
NUP54-204ENST00000506098 USP54Q70EL1 1684 aa9.97□□□□□ -0.81
NUP54-204ENST00000506098 NUDT16Q96DE0 195 aaKnown RBP9.97□□□□□ -0.81
NUP54-204ENST00000506098 RBM33Q96EV2 1170 aaKnown RBP9.97□□□□□ -0.81
NUP54-204ENST00000506098 PRR36Q9H6K5 1346 aa9.97□□□□□ -0.81
NUP54-204ENST00000506098 MSH6P52701 1360 aa9.97□□□□□ -0.81
NUP54-204ENST00000506098 NHSL1Q5SYE7 1610 aa9.96□□□□□ -0.81
NUP54-204ENST00000506098 TRPM3Q9HCF6 1732 aaPredicted RBP9.96□□□□□ -0.81
NUP54-204ENST00000506098 DDX10Q13206 875 aaKnown RBP9.96□□□□□ -0.82
NUP54-204ENST00000506098 CCDC61Q9Y6R9 512 aa9.96□□□□□ -0.82
NUP54-204ENST00000506098 MST1RQ04912 1400 aa9.96□□□□□ -0.82
NUP54-204ENST00000506098 CPSF1Q10570 1443 aaKnown RBP9.96□□□□□ -0.82
NUP54-204ENST00000506098 PPIP5K1Q6PFW1 1433 aa9.96□□□□□ -0.82
NUP54-204ENST00000506098 MARF1Q9Y4F3 1742 aaKnown RBP9.96□□□□□ -0.82
NUP54-204ENST00000506098 PLEKHG3A1L390 1219 aa9.95□□□□□ -0.82
NUP54-204ENST00000506098 CADPS2Q86UW7 1296 aa9.95□□□□□ -0.82
NUP54-204ENST00000506098 ANKRD36BQ8N2N9 1353 aa9.95□□□□□ -0.82
NUP54-204ENST00000506098 C1orf167Q5SNV9 1468 aa9.95□□□□□ -0.82
NUP54-204ENST00000506098 POLR3AO14802 1390 aaPredicted RBP9.94□□□□□ -0.82
NUP54-204ENST00000506098 PER1O15534 1290 aaPredicted RBP9.94□□□□□ -0.82
NUP54-204ENST00000506098 C14orf37Q86TY3 774 aa9.94□□□□□ -0.82
NUP54-204ENST00000506098 POLR3GLQ9BT43 218 aa9.94□□□□□ -0.82
NUP54-204ENST00000506098 SLC12A5Q9H2X9 1139 aa9.94□□□□□ -0.82
NUP54-204ENST00000506098 ALS2Q96Q42 1657 aa9.93□□□□□ -0.82
NUP54-204ENST00000506098 ROBO1Q9Y6N7 1651 aa9.93□□□□□ -0.82
NUP54-204ENST00000506098 ATF3P18847 181 aa9.93□□□□□ -0.82
NUP54-204ENST00000506098 CABP1Q9NZU7 370 aa9.93□□□□□ -0.82
NUP54-204ENST00000506098 A0A1W2PP64 1363 aa9.92□□□□□ -0.82
NUP54-204ENST00000506098 TMC1Q8TDI8 760 aa9.92□□□□□ -0.82
NUP54-204ENST00000506098 ZNF692Q9BU19 519 aaPredicted RBP9.92□□□□□ -0.82
NUP54-204ENST00000506098 PANK3Q9H999 370 aa9.92□□□□□ -0.82
NUP54-204ENST00000506098 TERF2IPQ9NYB0 399 aa9.92□□□□□ -0.82
NUP54-204ENST00000506098 BRD4O60885 1362 aaPredicted RBP9.91□□□□□ -0.82
NUP54-204ENST00000506098 PIK3C2AO00443 1686 aa9.91□□□□□ -0.82
NUP54-204ENST00000506098 NUTM2FA1L443 756 aa9.91□□□□□ -0.82
NUP54-204ENST00000506098 DIEXFQ68CQ4 756 aaKnown RBP9.91□□□□□ -0.82
NUP54-204ENST00000506098 CARD14Q9BXL6 1004 aa9.91□□□□□ -0.82
NUP54-204ENST00000506098 EDC4Q6P2E9 1401 aaKnown RBP9.9□□□□□ -0.82
NUP54-204ENST00000506098 SSH2Q76I76 1423 aa9.9□□□□□ -0.82
NUP54-204ENST00000506098 CRYBG1Q9Y4K1 1723 aa9.9□□□□□ -0.82
NUP54-204ENST00000506098 NPC1L1Q9UHC9 1359 aa9.9□□□□□ -0.82
NUP54-204ENST00000506098 ACEP12821 1306 aa9.9□□□□□ -0.82
NUP54-204ENST00000506098 HDGFL2Q7Z4V5 671 aaPredicted RBP9.9□□□□□ -0.82
NUP54-204ENST00000506098 PHF8Q9UPP1 1060 aa9.9□□□□□ -0.82
NUP54-204ENST00000506098 USP6P35125 1406 aa9.9□□□□□ -0.83
NUP54-204ENST00000506098 KTN1Q86UP2 1357 aaKnown RBP9.89□□□□□ -0.83
NUP54-204ENST00000506098 LTN1O94822 1766 aa9.89□□□□□ -0.83
NUP54-204ENST00000506098 ORAI2Q96SN7 254 aa9.89□□□□□ -0.83
NUP54-204ENST00000506098 SLAIN2Q9P270 581 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms