RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 TMEM131LA2VDJ0 1609 aa15.85■□□□□ 0.13
NUP54-202ENST00000502850 CERKQ8TCT0 537 aa15.84■□□□□ 0.13
NUP54-202ENST00000502850 FANCIQ9NVI1 1328 aa15.84■□□□□ 0.13
NUP54-202ENST00000502850 ADAMTS8Q9UP79 889 aa15.83■□□□□ 0.13
NUP54-202ENST00000502850 NINLQ9Y2I6 1382 aa15.83■□□□□ 0.12
NUP54-202ENST00000502850 NSD2O96028 1365 aa15.82■□□□□ 0.12
NUP54-202ENST00000502850 MYO5BQ9ULV0 1848 aa15.82■□□□□ 0.12
NUP54-202ENST00000502850 POLR3AO14802 1390 aaPredicted RBP15.82■□□□□ 0.12
NUP54-202ENST00000502850 TRAK1Q9UPV9 953 aa15.81■□□□□ 0.12
NUP54-202ENST00000502850 EVC2Q86UK5 1308 aa15.81■□□□□ 0.12
NUP54-202ENST00000502850 ZNF142P52746 1687 aaPredicted RBP15.8■□□□□ 0.12
NUP54-202ENST00000502850 NSD3Q9BZ95 1437 aa15.8■□□□□ 0.12
NUP54-202ENST00000502850 SALL2Q9Y467 1007 aaPredicted RBP15.79■□□□□ 0.12
NUP54-202ENST00000502850 CEP170BQ9Y4F5 1589 aaPredicted RBP15.78■□□□□ 0.12
NUP54-202ENST00000502850 TULP4Q9NRJ4 1543 aa15.78■□□□□ 0.12
NUP54-202ENST00000502850 FBXO31Q5XUX0 539 aaPredicted RBP15.78■□□□□ 0.12
NUP54-202ENST00000502850 ZNF521Q96K83 1311 aa15.77■□□□□ 0.12
NUP54-202ENST00000502850 GOLGA2Q08379 1002 aa15.77■□□□□ 0.12
NUP54-202ENST00000502850 CARD14Q9BXL6 1004 aa15.77■□□□□ 0.12
NUP54-202ENST00000502850 ANKRD36BQ8N2N9 1353 aa15.77■□□□□ 0.11
NUP54-202ENST00000502850 CGNL1Q0VF96 1302 aa15.76■□□□□ 0.11
NUP54-202ENST00000502850 NCKAP5LQ9HCH0 1330 aa15.76■□□□□ 0.11
NUP54-202ENST00000502850 SENP3-EIF4A1A0A087X0R7 540 aa15.76■□□□□ 0.11
NUP54-202ENST00000502850 IDI1Q13907 227 aa15.76■□□□□ 0.11
NUP54-202ENST00000502850 SHPRHQ149N8 1683 aa15.76■□□□□ 0.11
NUP54-202ENST00000502850 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.76■□□□□ 0.11
NUP54-202ENST00000502850 CDCA7LQ96GN5 454 aa15.76■□□□□ 0.11
NUP54-202ENST00000502850 SPATA31D1Q6ZQQ2 1576 aa15.75■□□□□ 0.11
NUP54-202ENST00000502850 TNRQ92752 1358 aa15.75■□□□□ 0.11
NUP54-202ENST00000502850 PLEKHH1Q9ULM0 1364 aa15.75■□□□□ 0.11
NUP54-202ENST00000502850 A2ML1A8K2U0 1454 aa15.75■□□□□ 0.11
NUP54-202ENST00000502850 TMEM132EQ6IEE7 984 aa15.74■□□□□ 0.11
NUP54-202ENST00000502850 MORC1Q86VD1 984 aa15.74■□□□□ 0.11
NUP54-202ENST00000502850 ANKRD26Q9UPS8 1709 aa15.74■□□□□ 0.11
NUP54-202ENST00000502850 ANP32EQ9BTT0 268 aa15.73■□□□□ 0.11
NUP54-202ENST00000502850 ATAD2Q6PL18 1390 aa15.73■□□□□ 0.11
NUP54-202ENST00000502850 CFAP53Q96M91 514 aa15.72■□□□□ 0.11
NUP54-202ENST00000502850 NKTRP30414 1462 aaKnown RBP15.71■□□□□ 0.11
NUP54-202ENST00000502850 DLC1Q96QB1 1528 aa15.71■□□□□ 0.11
NUP54-202ENST00000502850 DUSP27Q5VZP5 1158 aa15.71■□□□□ 0.11
NUP54-202ENST00000502850 EXOC6Q8TAG9 804 aa15.71■□□□□ 0.11
NUP54-202ENST00000502850 ALKQ9UM73 1620 aa15.7■□□□□ 0.1
NUP54-202ENST00000502850 YTHDC2Q9H6S0 1430 aaKnown RBP15.7■□□□□ 0.1
NUP54-202ENST00000502850 E9PSI1 815 aa15.7■□□□□ 0.1
NUP54-202ENST00000502850 SLFN5Q08AF3 891 aa15.7■□□□□ 0.1
NUP54-202ENST00000502850 NCBP3Q53F19 620 aaKnown RBP15.69■□□□□ 0.1
NUP54-202ENST00000502850 SLC12A5Q9H2X9 1139 aa15.69■□□□□ 0.1
NUP54-202ENST00000502850 LTBP4Q8N2S1 1624 aa15.69■□□□□ 0.1
NUP54-202ENST00000502850 MED14O60244 1454 aa15.69■□□□□ 0.1
NUP54-202ENST00000502850 TRMT2AQ8IZ69 625 aaKnown RBP15.68■□□□□ 0.1
NUP54-202ENST00000502850 NLRP1Q9C000 1473 aa15.68■□□□□ 0.1
NUP54-202ENST00000502850 ABCC11Q96J66 1382 aa15.68■□□□□ 0.1
NUP54-202ENST00000502850 TCERG1O14776 1098 aaKnown RBP15.68■□□□□ 0.1
NUP54-202ENST00000502850 THEMISQ8N1K5 641 aaPredicted RBP15.68■□□□□ 0.1
NUP54-202ENST00000502850 STAG3Q9UJ98 1225 aa15.67■□□□□ 0.1
NUP54-202ENST00000502850 APAF1O14727 1248 aa15.66■□□□□ 0.1
NUP54-202ENST00000502850 IQSEC2Q5JU85 1478 aa15.66■□□□□ 0.1
NUP54-202ENST00000502850 SETD1AO15047 1707 aaKnown RBP15.66■□□□□ 0.1
NUP54-202ENST00000502850 TERF2IPQ9NYB0 399 aa15.65■□□□□ 0.1
NUP54-202ENST00000502850 ZNF335Q9H4Z2 1342 aaPredicted RBP15.65■□□□□ 0.1
NUP54-202ENST00000502850 KIF20BQ96Q89 1820 aa15.65■□□□□ 0.1
NUP54-202ENST00000502850 MS4A1P11836 297 aa15.65■□□□□ 0.1
NUP54-202ENST00000502850 NUTM2DQ5VT03 806 aaPredicted RBP15.65■□□□□ 0.1
NUP54-202ENST00000502850 ERICH6Q7L0X2 663 aa15.65■□□□□ 0.1
NUP54-202ENST00000502850 ANKLE2Q86XL3 938 aa15.65■□□□□ 0.1
NUP54-202ENST00000502850 CCDC146Q8IYE0 955 aa15.65■□□□□ 0.1
NUP54-202ENST00000502850 RUNDC1Q96C34 613 aa15.65■□□□□ 0.1
NUP54-202ENST00000502850 POGKQ9P215 609 aa15.64■□□□□ 0.09
NUP54-202ENST00000502850 SRPK2P78362 688 aaKnown RBP15.63■□□□□ 0.09
NUP54-202ENST00000502850 CRBNQ96SW2 442 aa15.63■□□□□ 0.09
NUP54-202ENST00000502850 KNDC1Q76NI1 1749 aa15.63■□□□□ 0.09
NUP54-202ENST00000502850 A0A1W2PP64 1363 aa15.63■□□□□ 0.09
NUP54-202ENST00000502850 RIMS2Q9UQ26 1411 aa15.63■□□□□ 0.09
NUP54-202ENST00000502850 ADGRB2O60241 1585 aa15.63■□□□□ 0.09
NUP54-202ENST00000502850 CCDC27Q2M243 656 aa15.61■□□□□ 0.09
NUP54-202ENST00000502850 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.61■□□□□ 0.09
NUP54-202ENST00000502850 CABP2Q9NPB3 220 aa15.61■□□□□ 0.09
NUP54-202ENST00000502850 ATP7BP35670 1465 aa15.61■□□□□ 0.09
NUP54-202ENST00000502850 ANP32AP39687 249 aaKnown RBP15.61■□□□□ 0.09
NUP54-202ENST00000502850 HDGFL2Q7Z4V5 671 aaPredicted RBP15.6■□□□□ 0.09
NUP54-202ENST00000502850 PRAM1Q96QH2 718 aa15.6■□□□□ 0.09
NUP54-202ENST00000502850 STK26Q9P289 416 aa15.6■□□□□ 0.09
NUP54-202ENST00000502850 PLIN1O60240 522 aa15.59■□□□□ 0.09
NUP54-202ENST00000502850 MTHFSP49914 203 aa15.59■□□□□ 0.09
NUP54-202ENST00000502850 WDR63Q8IWG1 891 aa15.59■□□□□ 0.09
NUP54-202ENST00000502850 HDGFP51858 240 aaKnown RBP15.58■□□□□ 0.09
NUP54-202ENST00000502850 CENPQQ7L2Z9 268 aaPredicted RBP15.58■□□□□ 0.09
NUP54-202ENST00000502850 WWC1Q8IX03 1113 aa15.58■□□□□ 0.09
NUP54-202ENST00000502850 CD163L1Q9NR16 1453 aa15.57■□□□□ 0.08
NUP54-202ENST00000502850 UBR1Q8IWV7 1749 aa15.57■□□□□ 0.08
NUP54-202ENST00000502850 NRXN3Q9Y4C0 1643 aa15.57■□□□□ 0.08
NUP54-202ENST00000502850 PHF23Q9BUL5 403 aaPredicted RBP15.57■□□□□ 0.08
NUP54-202ENST00000502850 NPHP4O75161 1426 aaPredicted RBP15.56■□□□□ 0.08
NUP54-202ENST00000502850 MINK1Q8N4C8 1332 aaPredicted RBP15.56■□□□□ 0.08
NUP54-202ENST00000502850 TNNT2P45379 298 aaPredicted RBP15.56■□□□□ 0.08
NUP54-202ENST00000502850 SAFB2Q14151 953 aaKnown RBP eCLIP15.56■□□□□ 0.08
NUP54-202ENST00000502850 COL3A1P02461 1466 aaPredicted RBP15.55■□□□□ 0.08
NUP54-202ENST00000502850 MSH5O43196 834 aa15.55■□□□□ 0.08
NUP54-202ENST00000502850 AAMPQ13685 434 aa15.55■□□□□ 0.08
NUP54-202ENST00000502850 PNNQ9H307 717 aaKnown RBP15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms