RNA–Protein interactions for RNA: ENST00000498814.1

CPNE1-228, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-228ENST00000498814 PRAM1Q96QH2 718 aa22.23■■□□□ 1.15
CPNE1-228ENST00000498814 ROCK2O75116 1388 aaKnown RBP22.23■■□□□ 1.15
CPNE1-228ENST00000498814 RALGAPBQ86X10 1494 aa22.22■■□□□ 1.15
CPNE1-228ENST00000498814 GPRASP1Q5JY77 1395 aa22.22■■□□□ 1.15
CPNE1-228ENST00000498814 POGKQ9P215 609 aa22.21■■□□□ 1.15
CPNE1-228ENST00000498814 CDC42BPGQ6DT37 1551 aa22.2■■□□□ 1.14
CPNE1-228ENST00000498814 ILDR1Q86SU0 546 aaPredicted RBP22.19■■□□□ 1.14
CPNE1-228ENST00000498814 SLAIN2Q9P270 581 aa22.19■■□□□ 1.14
CPNE1-228ENST00000498814 PIP4K2BP78356 416 aa22.18■■□□□ 1.14
CPNE1-228ENST00000498814 SAFB2Q14151 953 aaKnown RBP eCLIP22.16■■□□□ 1.14
CPNE1-228ENST00000498814 ADGRB2O60241 1585 aa22.16■■□□□ 1.14
CPNE1-228ENST00000498814 MST1RQ04912 1400 aa22.15■■□□□ 1.14
CPNE1-228ENST00000498814 SCAF1Q9H7N4 1312 aaKnown RBP22.15■■□□□ 1.14
CPNE1-228ENST00000498814 ROBO1Q9Y6N7 1651 aa22.14■■□□□ 1.14
CPNE1-228ENST00000498814 CARD11Q9BXL7 1154 aa22.14■■□□□ 1.13
CPNE1-228ENST00000498814 FMN2Q9NZ56 1722 aa22.14■■□□□ 1.13
CPNE1-228ENST00000498814 EIF3AQ14152 1382 aaKnown RBP22.11■■□□□ 1.13
CPNE1-228ENST00000498814 QRICH2Q9H0J4 1663 aa22.11■■□□□ 1.13
CPNE1-228ENST00000498814 MINK1Q8N4C8 1332 aaPredicted RBP22.1■■□□□ 1.13
CPNE1-228ENST00000498814 CENPJQ9HC77 1338 aaPredicted RBP22.1■■□□□ 1.13
CPNE1-228ENST00000498814 C1orf167Q5SNV9 1468 aa22.09■■□□□ 1.13
CPNE1-228ENST00000498814 HIRIP3Q9BW71 556 aaPredicted RBP22.07■■□□□ 1.12
CPNE1-228ENST00000498814 RGPD8O14715 1765 aaPredicted RBP22.07■■□□□ 1.12
CPNE1-228ENST00000498814 BRINP3Q76B58 766 aa22.06■■□□□ 1.12
CPNE1-228ENST00000498814 WASLO00401 505 aaPredicted RBP22.05■■□□□ 1.12
CPNE1-228ENST00000498814 HSPA1LP34931 641 aa22.03■■□□□ 1.12
CPNE1-228ENST00000498814 ANKARQ7Z5J8 1434 aa22.03■■□□□ 1.12
CPNE1-228ENST00000498814 USP32Q8NFA0 1604 aa22.02■■□□□ 1.12
CPNE1-228ENST00000498814 NUTM2FA1L443 756 aa22.02■■□□□ 1.12
CPNE1-228ENST00000498814 ORAI2Q96SN7 254 aa22.02■■□□□ 1.12
CPNE1-228ENST00000498814 NHSL1Q5SYE7 1610 aa22.02■■□□□ 1.11
CPNE1-228ENST00000498814 AHDC1Q5TGY3 1603 aaPredicted RBP22.02■■□□□ 1.11
CPNE1-228ENST00000498814 TULP4Q9NRJ4 1543 aa22.01■■□□□ 1.11
CPNE1-228ENST00000498814 PHLPP1O60346 1717 aa22.01■■□□□ 1.11
CPNE1-228ENST00000498814 SBNO2Q9Y2G9 1366 aa22■■□□□ 1.11
CPNE1-228ENST00000498814 ESCO1Q5FWF5 840 aa22■■□□□ 1.11
CPNE1-228ENST00000498814 CDK19Q9BWU1 502 aa22■■□□□ 1.11
CPNE1-228ENST00000498814 KIF1AQ12756 1690 aa21.98■■□□□ 1.11
CPNE1-228ENST00000498814 USP47Q96K76 1375 aa21.98■■□□□ 1.11
CPNE1-228ENST00000498814 ITSN1Q15811 1721 aa21.97■■□□□ 1.11
CPNE1-228ENST00000498814 PRR36Q9H6K5 1346 aa21.97■■□□□ 1.11
CPNE1-228ENST00000498814 EVC2Q86UK5 1308 aa21.96■■□□□ 1.11
CPNE1-228ENST00000498814 ATP7BP35670 1465 aa21.96■■□□□ 1.11
CPNE1-228ENST00000498814 COL16A1Q07092 1604 aaPredicted RBP21.95■■□□□ 1.1
CPNE1-228ENST00000498814 ST20-MTHFSA0A0A6YYL1 179 aa21.95■■□□□ 1.1
CPNE1-228ENST00000498814 NUDT16Q96DE0 195 aaKnown RBP21.94■■□□□ 1.1
CPNE1-228ENST00000498814 TOPAZ1Q8N9V7 1692 aa21.94■■□□□ 1.1
CPNE1-228ENST00000498814 SRPK2P78362 688 aaKnown RBP21.93■■□□□ 1.1
CPNE1-228ENST00000498814 TESK2Q96S53 571 aa21.93■■□□□ 1.1
CPNE1-228ENST00000498814 PHF8Q9UPP1 1060 aa21.93■■□□□ 1.1
CPNE1-228ENST00000498814 SLC24A1O60721 1099 aa21.92■■□□□ 1.1
CPNE1-228ENST00000498814 NPHP3Q7Z494 1330 aa21.91■■□□□ 1.1
CPNE1-228ENST00000498814 DDX17Q92841 729 aaKnown RBP21.91■■□□□ 1.1
CPNE1-228ENST00000498814 CABP2Q9NPB3 220 aa21.91■■□□□ 1.1
CPNE1-228ENST00000498814 SOS2Q07890 1332 aaPredicted RBP21.9■■□□□ 1.1
CPNE1-228ENST00000498814 FOXO3O43524 673 aa21.9■■□□□ 1.1
CPNE1-228ENST00000498814 CCDC61Q9Y6R9 512 aa21.9■■□□□ 1.1
CPNE1-228ENST00000498814 EIF4G2P78344 907 aaKnown RBP eCLIP21.87■■□□□ 1.09
CPNE1-228ENST00000498814 PMFBP1Q8TBY8 1022 aa21.87■■□□□ 1.09
CPNE1-228ENST00000498814 PXDNQ92626 1479 aa21.87■■□□□ 1.09
CPNE1-228ENST00000498814 PLEKHG3A1L390 1219 aa21.86■■□□□ 1.09
CPNE1-228ENST00000498814 LRRC59Q96AG4 307 aaKnown RBP21.86■■□□□ 1.09
CPNE1-228ENST00000498814 PUS7Q96PZ0 661 aaKnown RBP21.86■■□□□ 1.09
CPNE1-228ENST00000498814 JCADQ9P266 1359 aa21.85■■□□□ 1.09
CPNE1-228ENST00000498814 SHPRHQ149N8 1683 aa21.85■■□□□ 1.09
CPNE1-228ENST00000498814 PPIP5K1Q6PFW1 1433 aa21.84■■□□□ 1.09
CPNE1-228ENST00000498814 ATAD2Q6PL18 1390 aa21.84■■□□□ 1.09
CPNE1-228ENST00000498814 KRT28Q7Z3Y7 464 aa21.83■■□□□ 1.09
CPNE1-228ENST00000498814 NGDNQ8NEJ9 315 aaKnown RBP21.83■■□□□ 1.09
CPNE1-228ENST00000498814 POLR3AO14802 1390 aaPredicted RBP21.83■■□□□ 1.08
CPNE1-228ENST00000498814 HSPA5P11021 654 aaKnown RBP21.82■■□□□ 1.08
CPNE1-228ENST00000498814 TMF1P82094 1093 aa21.82■■□□□ 1.08
CPNE1-228ENST00000498814 XPCQ01831 940 aaPredicted RBP21.82■■□□□ 1.08
CPNE1-228ENST00000498814 PSME1Q06323 249 aa21.82■■□□□ 1.08
CPNE1-228ENST00000498814 CABP1Q9NZU7 370 aa21.81■■□□□ 1.08
CPNE1-228ENST00000498814 ACEP12821 1306 aa21.8■■□□□ 1.08
CPNE1-228ENST00000498814 DISP3Q9P2K9 1392 aa21.8■■□□□ 1.08
CPNE1-228ENST00000498814 TRPM3Q9HCF6 1732 aaPredicted RBP21.8■■□□□ 1.08
CPNE1-228ENST00000498814 SBNO1A3KN83 1393 aa21.79■■□□□ 1.08
CPNE1-228ENST00000498814 SPATA31A3Q5VYP0 1347 aa21.78■■□□□ 1.08
CPNE1-228ENST00000498814 PNPLA6Q8IY17 1366 aa21.77■■□□□ 1.08
CPNE1-228ENST00000498814 AKAP12Q02952 1782 aa21.77■■□□□ 1.08
CPNE1-228ENST00000498814 CDCA8Q53HL2 280 aa21.77■■□□□ 1.08
CPNE1-228ENST00000498814 COL22A1Q8NFW1 1626 aaPredicted RBP21.77■■□□□ 1.07
CPNE1-228ENST00000498814 SPATA31A6Q5VVP1 1343 aa21.76■■□□□ 1.07
CPNE1-228ENST00000498814 TNS3Q68CZ2 1445 aa21.75■■□□□ 1.07
CPNE1-228ENST00000498814 ALS2Q96Q42 1657 aa21.75■■□□□ 1.07
CPNE1-228ENST00000498814 NINLQ9Y2I6 1382 aa21.74■■□□□ 1.07
CPNE1-228ENST00000498814 ZNF692Q9BU19 519 aaPredicted RBP21.73■■□□□ 1.07
CPNE1-228ENST00000498814 BRD4O60885 1362 aaPredicted RBP21.73■■□□□ 1.07
CPNE1-228ENST00000498814 CPSF1Q10570 1443 aaKnown RBP21.72■■□□□ 1.07
CPNE1-228ENST00000498814 ZEB1P37275 1124 aaPredicted RBP21.72■■□□□ 1.07
CPNE1-228ENST00000498814 TMC1Q8TDI8 760 aa21.72■■□□□ 1.07
CPNE1-228ENST00000498814 USP6P35125 1406 aa21.72■■□□□ 1.07
CPNE1-228ENST00000498814 SLC12A5Q9H2X9 1139 aa21.71■■□□□ 1.07
CPNE1-228ENST00000498814 MON2Q7Z3U7 1717 aa21.71■■□□□ 1.07
CPNE1-228ENST00000498814 ARHGEF10O15013 1369 aa21.71■■□□□ 1.07
CPNE1-228ENST00000498814 CD163L1Q9NR16 1453 aa21.71■■□□□ 1.07
CPNE1-228ENST00000498814 MED1Q15648 1581 aaPredicted RBP21.7■■□□□ 1.06
CPNE1-228ENST00000498814 PAK3O75914 559 aaPredicted RBP21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 148.8 ms