RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 MARF1Q9Y4F3 1742 aaKnown RBP22.23■■□□□ 1.15
TRAF4-212ENST00000498540 ATRNO75882 1429 aa22.23■■□□□ 1.15
TRAF4-212ENST00000498540 PXDNQ92626 1479 aa22.22■■□□□ 1.15
TRAF4-212ENST00000498540 FNBP4Q8N3X1 1017 aaPredicted RBP22.22■■□□□ 1.15
TRAF4-212ENST00000498540 SLC4A1APQ9BWU0 796 aaKnown RBP22.22■■□□□ 1.15
TRAF4-212ENST00000498540 TRPC5Q9UL62 973 aaPredicted RBP22.22■■□□□ 1.15
TRAF4-212ENST00000498540 ATAD2Q6PL18 1390 aa22.22■■□□□ 1.15
TRAF4-212ENST00000498540 ESCO1Q5FWF5 840 aa22.19■■□□□ 1.14
TRAF4-212ENST00000498540 NPHP3Q7Z494 1330 aa22.19■■□□□ 1.14
TRAF4-212ENST00000498540 IFT172Q9UG01 1749 aa22.17■■□□□ 1.14
TRAF4-212ENST00000498540 ADGRF5Q8IZF2 1346 aa22.17■■□□□ 1.14
TRAF4-212ENST00000498540 XPCQ01831 940 aaPredicted RBP22.17■■□□□ 1.14
TRAF4-212ENST00000498540 FOXD1Q16676 465 aa22.17■■□□□ 1.14
TRAF4-212ENST00000498540 BCL9LQ86UU0 1499 aa22.16■■□□□ 1.14
TRAF4-212ENST00000498540 TECPR2O15040 1411 aa22.15■■□□□ 1.14
TRAF4-212ENST00000498540 KNDC1Q76NI1 1749 aa22.15■■□□□ 1.14
TRAF4-212ENST00000498540 EP400Q96L91 3159 aa22.14■■□□□ 1.14
TRAF4-212ENST00000498540 FOXO3O43524 673 aa22.14■■□□□ 1.13
TRAF4-212ENST00000498540 WAPLQ7Z5K2 1190 aa22.13■■□□□ 1.13
TRAF4-212ENST00000498540 STK26Q9P289 416 aa22.13■■□□□ 1.13
TRAF4-212ENST00000498540 SRCAPQ6ZRS2 3230 aa22.13■■□□□ 1.13
TRAF4-212ENST00000498540 SPATA31E1Q6ZUB1 1445 aa22.13■■□□□ 1.13
TRAF4-212ENST00000498540 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.12■■□□□ 1.13
TRAF4-212ENST00000498540 FMN2Q9NZ56 1722 aa22.12■■□□□ 1.13
TRAF4-212ENST00000498540 NUTM2FA1L443 756 aa22.12■■□□□ 1.13
TRAF4-212ENST00000498540 CCDC144AA2RUR9 1427 aa22.12■■□□□ 1.13
TRAF4-212ENST00000498540 LRPPRCP42704 1394 aaKnown RBP22.12■■□□□ 1.13
TRAF4-212ENST00000498540 PLEKHH1Q9ULM0 1364 aa22.12■■□□□ 1.13
TRAF4-212ENST00000498540 RGL3Q3MIN7 710 aa22.1■■□□□ 1.13
TRAF4-212ENST00000498540 KIF1AQ12756 1690 aa22.09■■□□□ 1.13
TRAF4-212ENST00000498540 TMEM132EQ6IEE7 984 aa22.08■■□□□ 1.13
TRAF4-212ENST00000498540 ABCC11Q96J66 1382 aa22.08■■□□□ 1.12
TRAF4-212ENST00000498540 ANKRD30BQ9BXX2 1392 aa22.08■■□□□ 1.12
TRAF4-212ENST00000498540 PIK3C2GO75747 1445 aa22.07■■□□□ 1.12
TRAF4-212ENST00000498540 GJD4Q96KN9 370 aaPredicted RBP22.07■■□□□ 1.12
TRAF4-212ENST00000498540 GLI3P10071 1580 aa22.07■■□□□ 1.12
TRAF4-212ENST00000498540 USP32Q8NFA0 1604 aa22.06■■□□□ 1.12
TRAF4-212ENST00000498540 RGPD8O14715 1765 aaPredicted RBP22.05■■□□□ 1.12
TRAF4-212ENST00000498540 SLIT2O94813 1529 aa22.05■■□□□ 1.12
TRAF4-212ENST00000498540 YTHDC2Q9H6S0 1430 aaKnown RBP22.05■■□□□ 1.12
TRAF4-212ENST00000498540 RALGAPBQ86X10 1494 aa22.04■■□□□ 1.12
TRAF4-212ENST00000498540 SPATA31A3Q5VYP0 1347 aa22.04■■□□□ 1.12
TRAF4-212ENST00000498540 ZRANB1Q9UGI0 708 aa22.03■■□□□ 1.12
TRAF4-212ENST00000498540 BRWD3Q6RI45 1802 aa22.02■■□□□ 1.12
TRAF4-212ENST00000498540 CCDC125Q86Z20 511 aa22.01■■□□□ 1.11
TRAF4-212ENST00000498540 UNC5CLQ8IV45 518 aa22.01■■□□□ 1.11
TRAF4-212ENST00000498540 MPHOSPH9Q99550 1183 aa22.01■■□□□ 1.11
TRAF4-212ENST00000498540 ABCA3Q99758 1704 aa22■■□□□ 1.11
TRAF4-212ENST00000498540 PLCH1Q4KWH8 1693 aa21.99■■□□□ 1.11
TRAF4-212ENST00000498540 TNS3Q68CZ2 1445 aa21.98■■□□□ 1.11
TRAF4-212ENST00000498540 KRT28Q7Z3Y7 464 aa21.98■■□□□ 1.11
TRAF4-212ENST00000498540 BLMP54132 1417 aaPredicted RBP21.96■■□□□ 1.11
TRAF4-212ENST00000498540 NRXN1Q9ULB1 1477 aa21.96■■□□□ 1.11
TRAF4-212ENST00000498540 NWD2Q9ULI1 1742 aa21.95■■□□□ 1.1
TRAF4-212ENST00000498540 PHF8Q9UPP1 1060 aa21.95■■□□□ 1.1
TRAF4-212ENST00000498540 CABLES1Q8TDN4 633 aa21.94■■□□□ 1.1
TRAF4-212ENST00000498540 SIRT1Q96EB6 747 aa21.94■■□□□ 1.1
TRAF4-212ENST00000498540 PLEKHG5O94827 1062 aa21.93■■□□□ 1.1
TRAF4-212ENST00000498540 C14orf93Q9H972 538 aaKnown RBP21.93■■□□□ 1.1
TRAF4-212ENST00000498540 HAP1P54257 671 aaPredicted RBP21.92■■□□□ 1.1
TRAF4-212ENST00000498540 CFAP70Q5T0N1 1121 aa21.91■■□□□ 1.1
TRAF4-212ENST00000498540 SBNO1A3KN83 1393 aa21.9■■□□□ 1.1
TRAF4-212ENST00000498540 DHX57Q6P158 1386 aaKnown RBP21.9■■□□□ 1.1
TRAF4-212ENST00000498540 PSME1Q06323 249 aa21.9■■□□□ 1.1
TRAF4-212ENST00000498540 SAFB2Q14151 953 aaKnown RBP eCLIP21.9■■□□□ 1.1
TRAF4-212ENST00000498540 VPS72Q15906 364 aa21.9■■□□□ 1.1
TRAF4-212ENST00000498540 DEFB132Q7Z7B7 95 aa21.9■■□□□ 1.1
TRAF4-212ENST00000498540 SEPT12Q8IYM1 358 aa21.9■■□□□ 1.1
TRAF4-212ENST00000498540 PRAM1Q96QH2 718 aa21.89■■□□□ 1.09
TRAF4-212ENST00000498540 NRAPQ86VF7 1730 aa21.88■■□□□ 1.09
TRAF4-212ENST00000498540 ARHGEF10O15013 1369 aa21.87■■□□□ 1.09
TRAF4-212ENST00000498540 ADGRB2O60241 1585 aa21.87■■□□□ 1.09
TRAF4-212ENST00000498540 DLC1Q96QB1 1528 aa21.87■■□□□ 1.09
TRAF4-212ENST00000498540 TRPM3Q9HCF6 1732 aaPredicted RBP21.87■■□□□ 1.09
TRAF4-212ENST00000498540 LMOD2Q6P5Q4 547 aa21.87■■□□□ 1.09
TRAF4-212ENST00000498540 CCDC9Q9Y3X0 531 aaKnown RBP21.86■■□□□ 1.09
TRAF4-212ENST00000498540 PMFBP1Q8TBY8 1022 aa21.85■■□□□ 1.09
TRAF4-212ENST00000498540 ANKARQ7Z5J8 1434 aa21.85■■□□□ 1.09
TRAF4-212ENST00000498540 ADGRB1O14514 1584 aa21.84■■□□□ 1.09
TRAF4-212ENST00000498540 ONECUT3O60422 494 aaPredicted RBP21.84■■□□□ 1.09
TRAF4-212ENST00000498540 ALS2Q96Q42 1657 aa21.84■■□□□ 1.09
TRAF4-212ENST00000498540 FAM83GA6ND36 823 aa21.83■■□□□ 1.09
TRAF4-212ENST00000498540 SF3B2Q13435 895 aaKnown RBP21.83■■□□□ 1.09
TRAF4-212ENST00000498540 KRT27Q7Z3Y8 459 aa21.82■■□□□ 1.08
TRAF4-212ENST00000498540 POGKQ9P215 609 aa21.81■■□□□ 1.08
TRAF4-212ENST00000498540 LRP5O75197 1615 aa21.8■■□□□ 1.08
TRAF4-212ENST00000498540 COL14A1Q05707 1796 aaKnown RBP21.79■■□□□ 1.08
TRAF4-212ENST00000498540 HIRIP3Q9BW71 556 aaPredicted RBP21.79■■□□□ 1.08
TRAF4-212ENST00000498540 CRYBG1Q9Y4K1 1723 aa21.79■■□□□ 1.08
TRAF4-212ENST00000498540 PRR36Q9H6K5 1346 aa21.78■■□□□ 1.08
TRAF4-212ENST00000498540 TULP4Q9NRJ4 1543 aa21.77■■□□□ 1.08
TRAF4-212ENST00000498540 A0A0G2JS52 829 aa21.77■■□□□ 1.08
TRAF4-212ENST00000498540 MYT1Q01538 1121 aa21.77■■□□□ 1.08
TRAF4-212ENST00000498540 FAM98CQ17RN3 349 aaKnown RBP21.76■■□□□ 1.07
TRAF4-212ENST00000498540 BTG4Q9NY30 223 aa21.76■■□□□ 1.07
TRAF4-212ENST00000498540 TRAK1Q9UPV9 953 aa21.76■■□□□ 1.07
TRAF4-212ENST00000498540 MINK1Q8N4C8 1332 aaPredicted RBP21.76■■□□□ 1.07
TRAF4-212ENST00000498540 ACIN1Q9UKV3 1341 aaKnown RBP21.75■■□□□ 1.07
TRAF4-212ENST00000498540 GPRASP1Q5JY77 1395 aa21.74■■□□□ 1.07
TRAF4-212ENST00000498540 RGPD1P0DJD0 1748 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms