RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 ADAMTS13Q76LX8 1427 aa11.44□□□□□ -0.58
SF3A1-210ENST00000498259 MYBBP1AQ9BQG0 1328 aaKnown RBP11.44□□□□□ -0.58
SF3A1-210ENST00000498259 SAFB2Q14151 953 aaKnown RBP eCLIP11.44□□□□□ -0.58
SF3A1-210ENST00000498259 HDGFL2Q7Z4V5 671 aaPredicted RBP11.44□□□□□ -0.58
SF3A1-210ENST00000498259 SLC26A8Q96RN1 970 aa11.44□□□□□ -0.58
SF3A1-210ENST00000498259 ASXL1Q8IXJ9 1541 aa11.44□□□□□ -0.58
SF3A1-210ENST00000498259 MED14O60244 1454 aa11.44□□□□□ -0.58
SF3A1-210ENST00000498259 MINK1Q8N4C8 1332 aaPredicted RBP11.43□□□□□ -0.58
SF3A1-210ENST00000498259 NLRP13Q86W25 1043 aa11.43□□□□□ -0.58
SF3A1-210ENST00000498259 CDK19Q9BWU1 502 aa11.43□□□□□ -0.58
SF3A1-210ENST00000498259 MRS2Q9HD23 443 aa11.43□□□□□ -0.58
SF3A1-210ENST00000498259 AMOTL2Q9Y2J4 779 aa11.43□□□□□ -0.58
SF3A1-210ENST00000498259 NRXN3Q9Y4C0 1643 aa11.42□□□□□ -0.58
SF3A1-210ENST00000498259 CGNL1Q0VF96 1302 aa11.42□□□□□ -0.58
SF3A1-210ENST00000498259 WASLO00401 505 aaPredicted RBP11.42□□□□□ -0.58
SF3A1-210ENST00000498259 KNDC1Q76NI1 1749 aa11.42□□□□□ -0.58
SF3A1-210ENST00000498259 BRD4O60885 1362 aaPredicted RBP11.41□□□□□ -0.58
SF3A1-210ENST00000498259 ANKRD36BQ8N2N9 1353 aa11.41□□□□□ -0.58
SF3A1-210ENST00000498259 CPS1P31327 1500 aa11.41□□□□□ -0.58
SF3A1-210ENST00000498259 WAPLQ7Z5K2 1190 aa11.41□□□□□ -0.58
SF3A1-210ENST00000498259 YTHDC1Q96MU7 727 aaKnown RBP11.41□□□□□ -0.58
SF3A1-210ENST00000498259 CABP2Q9NPB3 220 aa11.41□□□□□ -0.58
SF3A1-210ENST00000498259 PTCH1Q13635 1447 aa11.41□□□□□ -0.58
SF3A1-210ENST00000498259 NSD2O96028 1365 aa11.41□□□□□ -0.58
SF3A1-210ENST00000498259 SETD1AO15047 1707 aaKnown RBP11.4□□□□□ -0.58
SF3A1-210ENST00000498259 CCDC61Q9Y6R9 512 aa11.4□□□□□ -0.58
SF3A1-210ENST00000498259 NPHP4O75161 1426 aaPredicted RBP11.4□□□□□ -0.58
SF3A1-210ENST00000498259 PARD3Q8TEW0 1356 aa11.4□□□□□ -0.59
SF3A1-210ENST00000498259 CC2D1BQ5T0F9 858 aaKnown RBP11.39□□□□□ -0.59
SF3A1-210ENST00000498259 ZNF692Q9BU19 519 aaPredicted RBP11.39□□□□□ -0.59
SF3A1-210ENST00000498259 SLC12A5Q9H2X9 1139 aa11.39□□□□□ -0.59
SF3A1-210ENST00000498259 AMER1Q5JTC6 1135 aaPredicted RBP11.38□□□□□ -0.59
SF3A1-210ENST00000498259 TULP4Q9NRJ4 1543 aa11.38□□□□□ -0.59
SF3A1-210ENST00000498259 CNGB1Q14028 1251 aaPredicted RBP11.37□□□□□ -0.59
SF3A1-210ENST00000498259 ROBO2Q9HCK4 1378 aa11.37□□□□□ -0.59
SF3A1-210ENST00000498259 KCNA6P17658 529 aa11.36□□□□□ -0.59
SF3A1-210ENST00000498259 MORC1Q86VD1 984 aa11.36□□□□□ -0.59
SF3A1-210ENST00000498259 NUDT16Q96DE0 195 aaKnown RBP11.36□□□□□ -0.59
SF3A1-210ENST00000498259 CABP1Q9NZU7 370 aa11.35□□□□□ -0.59
SF3A1-210ENST00000498259 PLEKHH1Q9ULM0 1364 aa11.35□□□□□ -0.59
SF3A1-210ENST00000498259 ATP7BP35670 1465 aa11.35□□□□□ -0.59
SF3A1-210ENST00000498259 NSD3Q9BZ95 1437 aa11.35□□□□□ -0.59
SF3A1-210ENST00000498259 CARD14Q9BXL6 1004 aa11.34□□□□□ -0.59
SF3A1-210ENST00000498259 DMRT2Q9Y5R5 561 aa11.34□□□□□ -0.59
SF3A1-210ENST00000498259 MYOM1P52179 1685 aa11.33□□□□□ -0.6
SF3A1-210ENST00000498259 ADGRB2O60241 1585 aa11.33□□□□□ -0.6
SF3A1-210ENST00000498259 KDM4FA0A1W2PPD8 638 aa11.33□□□□□ -0.6
SF3A1-210ENST00000498259 FAM9BQ8IZU0 186 aa11.33□□□□□ -0.6
SF3A1-210ENST00000498259 CFAP53Q96M91 514 aa11.33□□□□□ -0.6
SF3A1-210ENST00000498259 PTPRUQ92729 1446 aa11.33□□□□□ -0.6
SF3A1-210ENST00000498259 NCKAP5LQ9HCH0 1330 aa11.33□□□□□ -0.6
SF3A1-210ENST00000498259 INSRP06213 1382 aa11.32□□□□□ -0.6
SF3A1-210ENST00000498259 PPP2R1AP30153 589 aa11.32□□□□□ -0.6
SF3A1-210ENST00000498259 C14orf37Q86TY3 774 aa11.32□□□□□ -0.6
SF3A1-210ENST00000498259 PPIP5K1Q6PFW1 1433 aa11.32□□□□□ -0.6
SF3A1-210ENST00000498259 USP32Q8NFA0 1604 aa11.31□□□□□ -0.6
SF3A1-210ENST00000498259 A0A1W2PP64 1363 aa11.31□□□□□ -0.6
SF3A1-210ENST00000498259 PLEKHG3A1L390 1219 aa11.31□□□□□ -0.6
SF3A1-210ENST00000498259 WDR43Q15061 677 aaKnown RBP eCLIP11.31□□□□□ -0.6
SF3A1-210ENST00000498259 PNISRQ8TF01 805 aaKnown RBP11.31□□□□□ -0.6
SF3A1-210ENST00000498259 ANKARQ7Z5J8 1434 aa11.31□□□□□ -0.6
SF3A1-210ENST00000498259 XRN1Q8IZH2 1706 aaKnown RBP11.3□□□□□ -0.6
SF3A1-210ENST00000498259 EDC4Q6P2E9 1401 aaKnown RBP11.3□□□□□ -0.6
SF3A1-210ENST00000498259 NCOA3Q9Y6Q9 1424 aa11.3□□□□□ -0.6
SF3A1-210ENST00000498259 HNRNPUQ00839 825 aaKnown RBP eCLIP11.3□□□□□ -0.6
SF3A1-210ENST00000498259 PROSER2Q86WR7 435 aaPredicted RBP11.29□□□□□ -0.6
SF3A1-210ENST00000498259 NKTRP30414 1462 aaKnown RBP11.29□□□□□ -0.6
SF3A1-210ENST00000498259 ADRA2BP18089 450 aa11.28□□□□□ -0.6
SF3A1-210ENST00000498259 NGDNQ8NEJ9 315 aaKnown RBP11.28□□□□□ -0.6
SF3A1-210ENST00000498259 CHD2O14647 1828 aaKnown RBP11.28□□□□□ -0.6
SF3A1-210ENST00000498259 CPSF1Q10570 1443 aaKnown RBP11.27□□□□□ -0.6
SF3A1-210ENST00000498259 NGEFQ8N5V2 710 aa11.27□□□□□ -0.61
SF3A1-210ENST00000498259 COG3Q96JB2 828 aa11.27□□□□□ -0.61
SF3A1-210ENST00000498259 C19orf44Q9H6X5 657 aa11.27□□□□□ -0.61
SF3A1-210ENST00000498259 NUDCQ9Y266 331 aa11.27□□□□□ -0.61
SF3A1-210ENST00000498259 TTC21AQ8NDW8 1320 aa11.27□□□□□ -0.61
SF3A1-210ENST00000498259 SCAF1Q9H7N4 1312 aaKnown RBP11.27□□□□□ -0.61
SF3A1-210ENST00000498259 FYB1O15117 783 aa11.26□□□□□ -0.61
SF3A1-210ENST00000498259 PNNQ9H307 717 aaKnown RBP11.26□□□□□ -0.61
SF3A1-210ENST00000498259 POLR3AO14802 1390 aaPredicted RBP11.26□□□□□ -0.61
SF3A1-210ENST00000498259 ADGRL3Q9HAR2 1447 aa11.26□□□□□ -0.61
SF3A1-210ENST00000498259 CDC42BPGQ6DT37 1551 aa11.25□□□□□ -0.61
SF3A1-210ENST00000498259 ATF3P18847 181 aa11.25□□□□□ -0.61
SF3A1-210ENST00000498259 CCDC184Q52MB2 194 aa11.25□□□□□ -0.61
SF3A1-210ENST00000498259 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.25□□□□□ -0.61
SF3A1-210ENST00000498259 ACEP12821 1306 aa11.25□□□□□ -0.61
SF3A1-210ENST00000498259 ZBED9Q6R2W3 1325 aa11.25□□□□□ -0.61
SF3A1-210ENST00000498259 LMTK3Q96Q04 1460 aa11.25□□□□□ -0.61
SF3A1-210ENST00000498259 CD163L1Q9NR16 1453 aa11.25□□□□□ -0.61
SF3A1-210ENST00000498259 NWD1Q149M9 1564 aa11.24□□□□□ -0.61
SF3A1-210ENST00000498259 ITSN1Q15811 1721 aa11.24□□□□□ -0.61
SF3A1-210ENST00000498259 HSPA2P54652 639 aa11.24□□□□□ -0.61
SF3A1-210ENST00000498259 CADPS2Q86UW7 1296 aa11.24□□□□□ -0.61
SF3A1-210ENST00000498259 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.24□□□□□ -0.61
SF3A1-210ENST00000498259 GGNBP2Q9H3C7 697 aa11.23□□□□□ -0.61
SF3A1-210ENST00000498259 PRR36Q9H6K5 1346 aa11.23□□□□□ -0.61
SF3A1-210ENST00000498259 NUTM2FA1L443 756 aa11.22□□□□□ -0.61
SF3A1-210ENST00000498259 DCCP43146 1447 aa11.22□□□□□ -0.61
SF3A1-210ENST00000498259 TNNT2P45379 298 aaPredicted RBP11.22□□□□□ -0.61
SF3A1-210ENST00000498259 MTHFSP49914 203 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms