RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 QRICH2Q9H0J4 1663 aa9.47□□□□□ -0.89
USP39-219ENST00000496047 MNX1P50219 401 aaPredicted RBP9.46□□□□□ -0.9
USP39-219ENST00000496047 CDCA8Q53HL2 280 aa9.46□□□□□ -0.9
USP39-219ENST00000496047 ARHGAP31Q2M1Z3 1444 aa9.46□□□□□ -0.9
USP39-219ENST00000496047 AGLP35573 1532 aa9.46□□□□□ -0.9
USP39-219ENST00000496047 TMF1P82094 1093 aa9.45□□□□□ -0.9
USP39-219ENST00000496047 POTEGQ6S5H5 508 aa9.45□□□□□ -0.9
USP39-219ENST00000496047 MS4A3Q96HJ5 214 aa9.45□□□□□ -0.9
USP39-219ENST00000496047 METRNQ9UJH8 293 aa9.45□□□□□ -0.9
USP39-219ENST00000496047 WASHC2CQ9Y4E1 1318 aa9.45□□□□□ -0.9
USP39-219ENST00000496047 NPATQ14207 1427 aa9.45□□□□□ -0.9
USP39-219ENST00000496047 UGGT1Q9NYU2 1555 aa9.45□□□□□ -0.9
USP39-219ENST00000496047 ST20-MTHFSA0A0A6YYL1 179 aa9.44□□□□□ -0.9
USP39-219ENST00000496047 GGT6Q6P531 493 aa9.44□□□□□ -0.9
USP39-219ENST00000496047 PRKRIP1Q9H875 184 aaPredicted RBP9.44□□□□□ -0.9
USP39-219ENST00000496047 MYOM1P52179 1685 aa9.44□□□□□ -0.9
USP39-219ENST00000496047 ARHGEF28Q8N1W1 1705 aaKnown RBP9.43□□□□□ -0.9
USP39-219ENST00000496047 RPGRIP1LQ68CZ1 1315 aa9.43□□□□□ -0.9
USP39-219ENST00000496047 ECM2O94769 699 aaPredicted RBP9.43□□□□□ -0.9
USP39-219ENST00000496047 NEFLP07196 543 aa9.43□□□□□ -0.9
USP39-219ENST00000496047 ASTLQ6HA08 431 aaPredicted RBP9.42□□□□□ -0.9
USP39-219ENST00000496047 SLC39A7Q92504 469 aa9.42□□□□□ -0.9
USP39-219ENST00000496047 TSPYL2Q9H2G4 693 aaPredicted RBP9.42□□□□□ -0.9
USP39-219ENST00000496047 MRS2Q9HD23 443 aa9.42□□□□□ -0.9
USP39-219ENST00000496047 NRXN1Q9ULB1 1477 aa9.41□□□□□ -0.9
USP39-219ENST00000496047 NOS1P29475 1434 aa9.41□□□□□ -0.9
USP39-219ENST00000496047 C11orf95C9JLR9 678 aaPredicted RBP9.41□□□□□ -0.9
USP39-219ENST00000496047 ATMINO43313 823 aaPredicted RBP9.41□□□□□ -0.9
USP39-219ENST00000496047 RAPGEF3O95398 923 aa9.41□□□□□ -0.9
USP39-219ENST00000496047 C7P10643 843 aa9.41□□□□□ -0.9
USP39-219ENST00000496047 RALBP1Q15311 655 aa9.41□□□□□ -0.9
USP39-219ENST00000496047 CIZ1Q9ULV3 898 aaPredicted RBP9.41□□□□□ -0.9
USP39-219ENST00000496047 YEATS2Q9ULM3 1422 aa9.4□□□□□ -0.9
USP39-219ENST00000496047 CHGAP10645 457 aaKnown RBP9.4□□□□□ -0.9
USP39-219ENST00000496047 NEXMIFQ5QGS0 1516 aa9.4□□□□□ -0.91
USP39-219ENST00000496047 TMEM131LA2VDJ0 1609 aa9.39□□□□□ -0.91
USP39-219ENST00000496047 HNRNPUQ00839 825 aaKnown RBP eCLIP9.39□□□□□ -0.91
USP39-219ENST00000496047 GSE1Q14687 1217 aa9.39□□□□□ -0.91
USP39-219ENST00000496047 MYBBP1AQ9BQG0 1328 aaKnown RBP9.38□□□□□ -0.91
USP39-219ENST00000496047 NBPF1Q3BBV0 1214 aa9.38□□□□□ -0.91
USP39-219ENST00000496047 MAMSTRQ6ZN01 415 aa9.38□□□□□ -0.91
USP39-219ENST00000496047 PTPRMP28827 1452 aa9.38□□□□□ -0.91
USP39-219ENST00000496047 PIK3C2GO75747 1445 aa9.38□□□□□ -0.91
USP39-219ENST00000496047 BRD4O60885 1362 aaPredicted RBP9.37□□□□□ -0.91
USP39-219ENST00000496047 ERVK-7P63135 1459 aa9.37□□□□□ -0.91
USP39-219ENST00000496047 SLC52A1Q9NWF4 448 aa9.37□□□□□ -0.91
USP39-219ENST00000496047 FER1L4A9Z1Z3 1794 aa9.37□□□□□ -0.91
USP39-219ENST00000496047 SBNO2Q9Y2G9 1366 aa9.37□□□□□ -0.91
USP39-219ENST00000496047 ESF1Q9H501 851 aaKnown RBP9.36□□□□□ -0.91
USP39-219ENST00000496047 USP32Q8NFA0 1604 aa9.35□□□□□ -0.91
USP39-219ENST00000496047 VGFO15240 615 aaPredicted RBP9.35□□□□□ -0.91
USP39-219ENST00000496047 ZFYVE9O95405 1425 aa9.35□□□□□ -0.91
USP39-219ENST00000496047 POTEJP0CG39 1038 aa9.35□□□□□ -0.91
USP39-219ENST00000496047 FAM9BQ8IZU0 186 aa9.35□□□□□ -0.91
USP39-219ENST00000496047 TMC1Q8TDI8 760 aa9.35□□□□□ -0.91
USP39-219ENST00000496047 ASXL1Q8IXJ9 1541 aa9.35□□□□□ -0.91
USP39-219ENST00000496047 KNDC1Q76NI1 1749 aa9.34□□□□□ -0.91
USP39-219ENST00000496047 ANKRD26Q9UPS8 1709 aa9.34□□□□□ -0.91
USP39-219ENST00000496047 ZBED9Q6R2W3 1325 aa9.33□□□□□ -0.92
USP39-219ENST00000496047 ATN1P54259 1190 aaPredicted RBP9.33□□□□□ -0.92
USP39-219ENST00000496047 FAM212AQ96EL1 285 aa9.33□□□□□ -0.92
USP39-219ENST00000496047 FAM163AQ96GL9 167 aaPredicted RBP9.33□□□□□ -0.92
USP39-219ENST00000496047 TESK2Q96S53 571 aa9.33□□□□□ -0.92
USP39-219ENST00000496047 SCUBE2Q9NQ36 999 aa9.33□□□□□ -0.92
USP39-219ENST00000496047 PARD3Q8TEW0 1356 aa9.33□□□□□ -0.92
USP39-219ENST00000496047 KIF20BQ96Q89 1820 aa9.33□□□□□ -0.92
USP39-219ENST00000496047 ADGRB1O14514 1584 aa9.33□□□□□ -0.92
USP39-219ENST00000496047 CENPJQ9HC77 1338 aaPredicted RBP9.32□□□□□ -0.92
USP39-219ENST00000496047 NLRP13Q86W25 1043 aa9.32□□□□□ -0.92
USP39-219ENST00000496047 TAOK2Q9UL54 1235 aa9.32□□□□□ -0.92
USP39-219ENST00000496047 KNSTRNQ9Y448 316 aa9.32□□□□□ -0.92
USP39-219ENST00000496047 ADGRF5Q8IZF2 1346 aa9.31□□□□□ -0.92
USP39-219ENST00000496047 DCAF8Q5TAQ9 597 aa9.31□□□□□ -0.92
USP39-219ENST00000496047 PCDH10Q9P2E7 1040 aa9.31□□□□□ -0.92
USP39-219ENST00000496047 CCDC61Q9Y6R9 512 aa9.31□□□□□ -0.92
USP39-219ENST00000496047 SETD1AO15047 1707 aaKnown RBP9.31□□□□□ -0.92
USP39-219ENST00000496047 UBR1Q8IWV7 1749 aa9.31□□□□□ -0.92
USP39-219ENST00000496047 INSRP06213 1382 aa9.3□□□□□ -0.92
USP39-219ENST00000496047 HSPA2P54652 639 aa9.3□□□□□ -0.92
USP39-219ENST00000496047 CNGB1Q14028 1251 aaPredicted RBP9.3□□□□□ -0.92
USP39-219ENST00000496047 CFAP70Q5T0N1 1121 aa9.3□□□□□ -0.92
USP39-219ENST00000496047 NPC1L1Q9UHC9 1359 aa9.29□□□□□ -0.92
USP39-219ENST00000496047 ITSN1Q15811 1721 aa9.29□□□□□ -0.92
USP39-219ENST00000496047 C14orf93Q9H972 538 aaKnown RBP9.29□□□□□ -0.92
USP39-219ENST00000496047 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.29□□□□□ -0.92
USP39-219ENST00000496047 C3P01024 1663 aa9.29□□□□□ -0.92
USP39-219ENST00000496047 ALKQ9UM73 1620 aa9.28□□□□□ -0.92
USP39-219ENST00000496047 NINLQ9Y2I6 1382 aa9.28□□□□□ -0.92
USP39-219ENST00000496047 KIF12Q96FN5 646 aa9.28□□□□□ -0.92
USP39-219ENST00000496047 PANK3Q9H999 370 aa9.28□□□□□ -0.92
USP39-219ENST00000496047 DLC1Q96QB1 1528 aa9.27□□□□□ -0.93
USP39-219ENST00000496047 HDGFP51858 240 aaKnown RBP9.27□□□□□ -0.93
USP39-219ENST00000496047 SUPT16HQ9Y5B9 1047 aaKnown RBP9.27□□□□□ -0.93
USP39-219ENST00000496047 EVC2Q86UK5 1308 aa9.27□□□□□ -0.93
USP39-219ENST00000496047 LRPPRCP42704 1394 aaKnown RBP9.26□□□□□ -0.93
USP39-219ENST00000496047 NUBP1P53384 320 aa9.26□□□□□ -0.93
USP39-219ENST00000496047 IDI1Q13907 227 aa9.26□□□□□ -0.93
USP39-219ENST00000496047 ERICH6BQ5W0A0 696 aa9.26□□□□□ -0.93
USP39-219ENST00000496047 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.26□□□□□ -0.93
USP39-219ENST00000496047 PUS7Q96PZ0 661 aaKnown RBP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms