RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 FUT2Q10981 343 aa10.77□□□□□ -0.69
SMC4-224ENST00000494612 THAP11Q96EK4 314 aa10.77□□□□□ -0.69
SMC4-224ENST00000494612 ATP6V1AP38606 617 aa10.76□□□□□ -0.69
SMC4-224ENST00000494612 SENP2Q9HC62 589 aa10.75□□□□□ -0.69
SMC4-224ENST00000494612 SULF1Q8IWU6 871 aa10.74□□□□□ -0.69
SMC4-224ENST00000494612 FAM160A2Q8N612 972 aaPredicted RBP10.74□□□□□ -0.69
SMC4-224ENST00000494612 SNIP1Q8TAD8 396 aaKnown RBP10.74□□□□□ -0.69
SMC4-224ENST00000494612 ATP13A2Q9NQ11 1180 aa10.74□□□□□ -0.69
SMC4-224ENST00000494612 TERTO14746 1132 aaKnown RBP10.73□□□□□ -0.69
SMC4-224ENST00000494612 SLC27A5Q9Y2P5 690 aa10.73□□□□□ -0.69
SMC4-224ENST00000494612 WNT7AO00755 349 aa10.72□□□□□ -0.69
SMC4-224ENST00000494612 VSIG10Q8N0Z9 540 aa10.72□□□□□ -0.69
SMC4-224ENST00000494612 SALL2Q9Y467 1007 aaPredicted RBP10.72□□□□□ -0.69
SMC4-224ENST00000494612 PRDM9Q9NQV7 894 aa10.71□□□□□ -0.69
SMC4-224ENST00000494612 SNRPBP14678 240 aaKnown RBP10.7□□□□□ -0.7
SMC4-224ENST00000494612 SMPD1P17405 629 aa10.7□□□□□ -0.7
SMC4-224ENST00000494612 BRICD5Q6PL45 260 aa10.7□□□□□ -0.7
SMC4-224ENST00000494612 TRIM47Q96LD4 638 aa10.7□□□□□ -0.7
SMC4-224ENST00000494612 MAP2K5Q13163 448 aa10.69□□□□□ -0.7
SMC4-224ENST00000494612 FAM181BA6NEQ2 426 aa10.68□□□□□ -0.7
SMC4-224ENST00000494612 IRF6O14896 467 aa10.68□□□□□ -0.7
SMC4-224ENST00000494612 MSS51Q4VC12 460 aa10.68□□□□□ -0.7
SMC4-224ENST00000494612 KIFC2Q96AC6 838 aa10.68□□□□□ -0.7
SMC4-224ENST00000494612 CD46P15529 392 aa10.66□□□□□ -0.7
SMC4-224ENST00000494612 TRIM32Q13049 653 aa10.66□□□□□ -0.7
SMC4-224ENST00000494612 GRIPAP1Q4V328 841 aa10.66□□□□□ -0.7
SMC4-224ENST00000494612 MRGPRX2Q96LB1 330 aa10.66□□□□□ -0.7
SMC4-224ENST00000494612 J3QL48 77 aa10.65□□□□□ -0.7
SMC4-224ENST00000494612 REPIN1Q9BWE0 567 aaKnown RBP10.65□□□□□ -0.7
SMC4-224ENST00000494612 RNF19BQ6ZMZ0 732 aa10.64□□□□□ -0.71
SMC4-224ENST00000494612 SLC16A10Q8TF71 515 aa10.64□□□□□ -0.71
SMC4-224ENST00000494612 MINK1Q8N4C8 1332 aaPredicted RBP10.63□□□□□ -0.71
SMC4-224ENST00000494612 LCE2CQ5TA81 110 aa10.63□□□□□ -0.71
SMC4-224ENST00000494612 Q3C1V9 767 aa10.62□□□□□ -0.71
SMC4-224ENST00000494612 HPS1Q92902 700 aa10.61□□□□□ -0.71
SMC4-224ENST00000494612 TULP1O00294 542 aaPredicted RBP10.6□□□□□ -0.71
SMC4-224ENST00000494612 MDM2Q00987 491 aaPredicted RBP10.6□□□□□ -0.71
SMC4-224ENST00000494612 KDM4AO75164 1064 aa10.59□□□□□ -0.71
SMC4-224ENST00000494612 MMP16P51512 607 aa10.58□□□□□ -0.72
SMC4-224ENST00000494612 CCDC102AQ96A19 550 aa10.57□□□□□ -0.72
SMC4-224ENST00000494612 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.56□□□□□ -0.72
SMC4-224ENST00000494612 USP46P62068 366 aa10.55□□□□□ -0.72
SMC4-224ENST00000494612 RC3H1Q5TC82 1133 aaKnown RBP10.55□□□□□ -0.72
SMC4-224ENST00000494612 CCDC24Q8N4L8 307 aa10.55□□□□□ -0.72
SMC4-224ENST00000494612 NXF1Q9UBU9 619 aaKnown RBP10.55□□□□□ -0.72
SMC4-224ENST00000494612 ZSCAN1Q8NBB4 408 aa10.54□□□□□ -0.72
SMC4-224ENST00000494612 HLA-CQ95604 372 aa10.54□□□□□ -0.72
SMC4-224ENST00000494612 USB1Q9BQ65 265 aaKnown RBP10.54□□□□□ -0.72
SMC4-224ENST00000494612 DXOO77932 396 aaKnown RBP10.53□□□□□ -0.72
SMC4-224ENST00000494612 WNT7BP56706 349 aa10.53□□□□□ -0.72
SMC4-224ENST00000494612 IRF7Q92985 503 aa10.53□□□□□ -0.72
SMC4-224ENST00000494612 FAM217BQ9NTX9 383 aaPredicted RBP10.53□□□□□ -0.72
SMC4-224ENST00000494612 HOXA2O43364 376 aa10.52□□□□□ -0.73
SMC4-224ENST00000494612 ALDH1A1P00352 501 aa10.52□□□□□ -0.73
SMC4-224ENST00000494612 GPCPD1Q9NPB8 672 aa10.52□□□□□ -0.73
SMC4-224ENST00000494612 CLCN1P35523 988 aa10.51□□□□□ -0.73
SMC4-224ENST00000494612 GMPRP36959 345 aa10.51□□□□□ -0.73
SMC4-224ENST00000494612 NPAS3Q8IXF0 933 aa10.5□□□□□ -0.73
SMC4-224ENST00000494612 SKOR1P84550 965 aa10.49□□□□□ -0.73
SMC4-224ENST00000494612 GUCA2AQ02747 115 aa10.47□□□□□ -0.73
SMC4-224ENST00000494612 CAPN5O15484 640 aaPredicted RBP10.46□□□□□ -0.73
SMC4-224ENST00000494612 WASF2Q9Y6W5 498 aa10.46□□□□□ -0.73
SMC4-224ENST00000494612 BMP1P13497 986 aa10.44□□□□□ -0.74
SMC4-224ENST00000494612 BARGINQ6ZT62 677 aa10.44□□□□□ -0.74
SMC4-224ENST00000494612 SYMPKQ92797 1274 aaKnown RBP10.44□□□□□ -0.74
SMC4-224ENST00000494612 ZMYND10O75800 440 aa10.43□□□□□ -0.74
SMC4-224ENST00000494612 VEGFBP49765 207 aa10.43□□□□□ -0.74
SMC4-224ENST00000494612 EHBP1Q8NDI1 1231 aa10.43□□□□□ -0.74
SMC4-224ENST00000494612 H3BM21 787 aa10.42□□□□□ -0.74
SMC4-224ENST00000494612 TRIM46Q7Z4K8 759 aa10.42□□□□□ -0.74
SMC4-224ENST00000494612 NUTM1Q86Y26 1132 aa10.42□□□□□ -0.74
SMC4-224ENST00000494612 KRI1Q8N9T8 703 aaKnown RBP10.42□□□□□ -0.74
SMC4-224ENST00000494612 PCDHGC3Q9UN70 934 aa10.42□□□□□ -0.74
SMC4-224ENST00000494612 LOC100996750A0A140TA64 210 aa10.41□□□□□ -0.74
SMC4-224ENST00000494612 JUNDP17535 347 aa10.41□□□□□ -0.74
SMC4-224ENST00000494612 LORP23490 312 aaPredicted RBP10.41□□□□□ -0.74
SMC4-224ENST00000494612 SSTR3P32745 418 aaPredicted RBP10.41□□□□□ -0.74
SMC4-224ENST00000494612 KRTAP4-6Q9BYQ5 205 aa10.41□□□□□ -0.74
SMC4-224ENST00000494612 RETREG3Q86VR2 466 aa10.4□□□□□ -0.74
SMC4-224ENST00000494612 SIAH2O43255 324 aa10.38□□□□□ -0.75
SMC4-224ENST00000494612 FDX1P10109 184 aa10.38□□□□□ -0.75
SMC4-224ENST00000494612 AMHR2Q16671 573 aa10.38□□□□□ -0.75
SMC4-224ENST00000494612 ZC3H15Q8WU90 426 aaKnown RBP10.38□□□□□ -0.75
SMC4-224ENST00000494612 SPIRE2Q8WWL2 714 aa10.38□□□□□ -0.75
SMC4-224ENST00000494612 BCANQ96GW7 911 aa10.38□□□□□ -0.75
SMC4-224ENST00000494612 PTCRAQ6ISU1 281 aaPredicted RBP10.37□□□□□ -0.75
SMC4-224ENST00000494612 NUDT12Q9BQG2 462 aa10.37□□□□□ -0.75
SMC4-224ENST00000494612 ERBB4Q15303 1308 aa10.35□□□□□ -0.75
SMC4-224ENST00000494612 ZFP42Q96MM3 310 aa10.35□□□□□ -0.75
SMC4-224ENST00000494612 NDUFV2P19404 249 aa10.34□□□□□ -0.75
SMC4-224ENST00000494612 MOXD2PA6NHM9 499 aa10.33□□□□□ -0.76
SMC4-224ENST00000494612 C6orf229H3BNL8 230 aa10.33□□□□□ -0.76
SMC4-224ENST00000494612 TTLL12Q14166 644 aaPredicted RBP10.32□□□□□ -0.76
SMC4-224ENST00000494612 GIGYF2Q6Y7W6 1299 aaKnown RBP10.32□□□□□ -0.76
SMC4-224ENST00000494612 SH3BP2P78314 561 aa10.31□□□□□ -0.76
SMC4-224ENST00000494612 SCARF1Q14162 830 aa10.31□□□□□ -0.76
SMC4-224ENST00000494612 PLEKHG3A1L390 1219 aa10.3□□□□□ -0.76
SMC4-224ENST00000494612 CCNYL3P0C7X3 344 aa10.29□□□□□ -0.76
SMC4-224ENST00000494612 MS4A1P11836 297 aa10.29□□□□□ -0.76
SMC4-224ENST00000494612 SUZ12Q15022 739 aaKnown RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms