RNA–Protein interactions for RNA: ENST00000493853.1

RBM39-238, Transcript of RNA binding motif protein 39, human

TSL 4

Gene RBM39, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-238	ENST00000493853	ABCC5	O15440	1437 aa		11.61	□□□□□ -0.55
RBM39-238	ENST00000493853	LTBP4	Q8N2S1	1624 aa		11.61	□□□□□ -0.55
RBM39-238	ENST00000493853	ANKRD30A	Q9BXX3	1397 aa		11.61	□□□□□ -0.55
RBM39-238	ENST00000493853	MAST1	Q9Y2H9	1570 aa		11.61	□□□□□ -0.55
RBM39-238	ENST00000493853	FGD6	Q6ZV73	1430 aa		11.6	□□□□□ -0.55
RBM39-238	ENST00000493853	DUOX2	Q9NRD8	1548 aa		11.6	□□□□□ -0.55
RBM39-238	ENST00000493853	IQSEC2	Q5JU85	1478 aa		11.6	□□□□□ -0.55
RBM39-238	ENST00000493853	DOK7	Q18PE1	504 aa		11.6	□□□□□ -0.55
RBM39-238	ENST00000493853	ZNF710	Q8N1W2	664 aa		11.6	□□□□□ -0.55
RBM39-238	ENST00000493853	ZNF142	P52746	1687 aa	Predicted RBP	11.59	□□□□□ -0.55
RBM39-238	ENST00000493853	UGGT1	Q9NYU2	1555 aa		11.59	□□□□□ -0.55
RBM39-238	ENST00000493853	DISP3	Q9P2K9	1392 aa		11.59	□□□□□ -0.55
RBM39-238	ENST00000493853	HOXB3	P14651	431 aa	Predicted RBP	11.59	□□□□□ -0.55
RBM39-238	ENST00000493853	EID1	Q9Y6B2	187 aa		11.59	□□□□□ -0.55
RBM39-238	ENST00000493853	DNMT1	P26358	1616 aa	Known RBP	11.59	□□□□□ -0.55
RBM39-238	ENST00000493853	DAPK1	P53355	1430 aa		11.59	□□□□□ -0.55
RBM39-238	ENST00000493853	TOM1	O60784	492 aa		11.58	□□□□□ -0.56
RBM39-238	ENST00000493853	TMC2	Q8TDI7	906 aa		11.58	□□□□□ -0.56
RBM39-238	ENST00000493853	ABCC3	O15438	1527 aa		11.58	□□□□□ -0.56
RBM39-238	ENST00000493853	ERBIN	Q96RT1	1412 aa		11.58	□□□□□ -0.56
RBM39-238	ENST00000493853	SHANK2	Q9UPX8	1470 aa		11.57	□□□□□ -0.56
RBM39-238	ENST00000493853	PTPN23	Q9H3S7	1636 aa		11.57	□□□□□ -0.56
RBM39-238	ENST00000493853	C2orf72	A6NCS6	295 aa		11.57	□□□□□ -0.56
RBM39-238	ENST00000493853	PIP4K2B	P78356	416 aa		11.57	□□□□□ -0.56
RBM39-238	ENST00000493853	TXNDC2	Q86VQ3	553 aa		11.57	□□□□□ -0.56
RBM39-238	ENST00000493853	MARVELD3	Q96A59	401 aa		11.57	□□□□□ -0.56
RBM39-238	ENST00000493853	NPHP4	O75161	1426 aa	Predicted RBP	11.57	□□□□□ -0.56
RBM39-238	ENST00000493853	RIMBP2	O15034	1052 aa		11.56	□□□□□ -0.56
RBM39-238	ENST00000493853	ERVK-7	P63135	1459 aa		11.56	□□□□□ -0.56
RBM39-238	ENST00000493853	GTPBP6	O43824	516 aa	Predicted RBP	11.55	□□□□□ -0.56
RBM39-238	ENST00000493853	EIF2AK4	Q9P2K8	1649 aa	Known RBP	11.55	□□□□□ -0.56
RBM39-238	ENST00000493853	RNF17	Q9BXT8	1623 aa	Known RBP	11.54	□□□□□ -0.56
RBM39-238	ENST00000493853	ARHGAP31	Q2M1Z3	1444 aa		11.53	□□□□□ -0.56
RBM39-238	ENST00000493853	KIF3C	O14782	793 aa		11.53	□□□□□ -0.56
RBM39-238	ENST00000493853	EMP3	P54852	163 aa		11.53	□□□□□ -0.56
RBM39-238	ENST00000493853	BCAN	Q96GW7	911 aa		11.53	□□□□□ -0.56
RBM39-238	ENST00000493853	SPATA31D1	Q6ZQQ2	1576 aa		11.53	□□□□□ -0.56
RBM39-238	ENST00000493853	CPS1	P31327	1500 aa		11.52	□□□□□ -0.57
RBM39-238	ENST00000493853	LTK	P29376	864 aa		11.52	□□□□□ -0.57
RBM39-238	ENST00000493853	IDI1	Q13907	227 aa		11.52	□□□□□ -0.57
RBM39-238	ENST00000493853	ZC3H13	Q5T200	1668 aa	Known RBP	11.52	□□□□□ -0.57
RBM39-238	ENST00000493853	MED14	O60244	1454 aa		11.51	□□□□□ -0.57
RBM39-238	ENST00000493853	ITGAE	P38570	1179 aa		11.51	□□□□□ -0.57
RBM39-238	ENST00000493853	PPARGC1B	Q86YN6	1023 aa	Known RBP	11.51	□□□□□ -0.57
RBM39-238	ENST00000493853	SLC52A1	Q9NWF4	448 aa		11.51	□□□□□ -0.57
RBM39-238	ENST00000493853	BBX	Q8WY36	941 aa	Predicted RBP	11.5	□□□□□ -0.57
RBM39-238	ENST00000493853	ANKRD50	Q9ULJ7	1429 aa		11.5	□□□□□ -0.57
RBM39-238	ENST00000493853	MROH1	Q8NDA8	1641 aa		11.49	□□□□□ -0.57
RBM39-238	ENST00000493853	HSPA1L	P34931	641 aa		11.49	□□□□□ -0.57
RBM39-238	ENST00000493853	HDGF	P51858	240 aa	Known RBP	11.49	□□□□□ -0.57
RBM39-238	ENST00000493853	PCDH10	Q9P2E7	1040 aa		11.49	□□□□□ -0.57
RBM39-238	ENST00000493853	SCAF11	Q99590	1463 aa	Known RBP	11.49	□□□□□ -0.57
RBM39-238	ENST00000493853	PRDM15	P57071	1507 aa	Predicted RBP	11.49	□□□□□ -0.57
RBM39-238	ENST00000493853	NEURL4	Q96JN8	1562 aa		11.49	□□□□□ -0.57
RBM39-238	ENST00000493853	HOXB1	P14653	301 aa	Predicted RBP	11.48	□□□□□ -0.57
RBM39-238	ENST00000493853	ZSWIM6	Q9HCJ5	1215 aa		11.48	□□□□□ -0.57
RBM39-238	ENST00000493853	TMEM2	Q9UHN6	1383 aa		11.48	□□□□□ -0.57
RBM39-238	ENST00000493853	DEPDC5	O75140	1603 aa		11.47	□□□□□ -0.57
RBM39-238	ENST00000493853	ILDR2	Q71H61	639 aa		11.47	□□□□□ -0.57
RBM39-238	ENST00000493853	CDAN1	Q8IWY9	1227 aa		11.47	□□□□□ -0.57
RBM39-238	ENST00000493853	CEP152	O94986	1710 aa		11.46	□□□□□ -0.57
RBM39-238	ENST00000493853	ADGRL2	O95490	1459 aa		11.46	□□□□□ -0.57
RBM39-238	ENST00000493853	FAM205C	A6NFA0	338 aa		11.46	□□□□□ -0.57
RBM39-238	ENST00000493853	PPP1R15A	O75807	674 aa	Predicted RBP	11.46	□□□□□ -0.57
RBM39-238	ENST00000493853	GPHN	Q9NQX3	736 aa	Predicted RBP	11.46	□□□□□ -0.57
RBM39-238	ENST00000493853	POLR1A	O95602	1720 aa	Predicted RBP	11.46	□□□□□ -0.58
RBM39-238	ENST00000493853	CROCC2	H7BZ55	1655 aa		11.46	□□□□□ -0.58
RBM39-238	ENST00000493853	SLC26A8	Q96RN1	970 aa		11.45	□□□□□ -0.58
RBM39-238	ENST00000493853	LMTK2	Q8IWU2	1503 aa		11.45	□□□□□ -0.58
RBM39-238	ENST00000493853	PROSER2	Q86WR7	435 aa	Predicted RBP	11.44	□□□□□ -0.58
RBM39-238	ENST00000493853	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.44	□□□□□ -0.58
RBM39-238	ENST00000493853	VWDE	Q8N2E2	1590 aa		11.44	□□□□□ -0.58
RBM39-238	ENST00000493853	SLIT1	O75093	1534 aa		11.44	□□□□□ -0.58
RBM39-238	ENST00000493853	ARHGAP23	Q9P227	1491 aa		11.44	□□□□□ -0.58
RBM39-238	ENST00000493853	IQGAP1	P46940	1657 aa		11.43	□□□□□ -0.58
RBM39-238	ENST00000493853	ARSI	Q5FYB1	569 aa		11.43	□□□□□ -0.58
RBM39-238	ENST00000493853	NOS1	P29475	1434 aa		11.43	□□□□□ -0.58
RBM39-238	ENST00000493853	NUP155	O75694	1391 aa		11.42	□□□□□ -0.58
RBM39-238	ENST00000493853	EFCAB6	Q5THR3	1501 aa		11.42	□□□□□ -0.58
RBM39-238	ENST00000493853	LRRC7	Q96NW7	1537 aa		11.42	□□□□□ -0.58
RBM39-238	ENST00000493853	SOCS7	O14512	581 aa		11.42	□□□□□ -0.58
RBM39-238	ENST00000493853	KCNA6	P17658	529 aa		11.42	□□□□□ -0.58
RBM39-238	ENST00000493853	GPR153	Q6NV75	609 aa		11.42	□□□□□ -0.58
RBM39-238	ENST00000493853	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
RBM39-238	ENST00000493853	CFAP65	Q6ZU64	1925 aa	Known RBP	11.42	□□□□□ -0.58
RBM39-238	ENST00000493853	ROCK1	Q13464	1354 aa		11.41	□□□□□ -0.58
RBM39-238	ENST00000493853	ERBB3	P21860	1342 aa		11.41	□□□□□ -0.58
RBM39-238	ENST00000493853	UBR1	Q8IWV7	1749 aa		11.41	□□□□□ -0.58
RBM39-238	ENST00000493853	RPRD2	Q5VT52	1461 aa	Known RBP	11.41	□□□□□ -0.58
RBM39-238	ENST00000493853	FOXK1	P85037	733 aa		11.41	□□□□□ -0.58
RBM39-238	ENST00000493853	PLPP6	Q8IY26	295 aa		11.41	□□□□□ -0.58
RBM39-238	ENST00000493853	HS3ST6	Q96QI5	342 aa		11.41	□□□□□ -0.58
RBM39-238	ENST00000493853	DSG2	Q14126	1118 aa		11.4	□□□□□ -0.58
RBM39-238	ENST00000493853	PIK3C2B	O00750	1634 aa		11.39	□□□□□ -0.59
RBM39-238	ENST00000493853	PDE4A	P27815	886 aa		11.39	□□□□□ -0.59
RBM39-238	ENST00000493853	SPRYD3	Q8NCJ5	442 aa		11.39	□□□□□ -0.59
RBM39-238	ENST00000493853	KHSRP	Q92945	711 aa	Known RBP eCLIP	11.39	□□□□□ -0.59	1e-35	■■■■□ 25
RBM39-238	ENST00000493853	TMEM94	Q12767	1356 aa		11.39	□□□□□ -0.59
RBM39-238	ENST00000493853	SLC34A2	O95436	690 aa		11.38	□□□□□ -0.59
RBM39-238	ENST00000493853	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.38	□□□□□ -0.59

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