RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 INSRP06213 1382 aa16.33■□□□□ 0.21
HMGN1-220ENST00000492280 SBNO2Q9Y2G9 1366 aa16.33■□□□□ 0.21
HMGN1-220ENST00000492280 ARHGEF28Q8N1W1 1705 aaKnown RBP16.33■□□□□ 0.21
HMGN1-220ENST00000492280 MTHFSP49914 203 aa16.33■□□□□ 0.2
HMGN1-220ENST00000492280 PIK3C2BO00750 1634 aa16.33■□□□□ 0.2
HMGN1-220ENST00000492280 SRPK2P78362 688 aaKnown RBP16.32■□□□□ 0.2
HMGN1-220ENST00000492280 VGFO15240 615 aaPredicted RBP16.32■□□□□ 0.2
HMGN1-220ENST00000492280 NBR1Q14596 966 aa16.31■□□□□ 0.2
HMGN1-220ENST00000492280 GGNBP2Q9H3C7 697 aa16.31■□□□□ 0.2
HMGN1-220ENST00000492280 NOP58Q9Y2X3 529 aaKnown RBP16.3■□□□□ 0.2
HMGN1-220ENST00000492280 BCL2L13Q9BXK5 485 aa16.3■□□□□ 0.2
HMGN1-220ENST00000492280 SHPRHQ149N8 1683 aa16.29■□□□□ 0.2
HMGN1-220ENST00000492280 PDE4AP27815 886 aa16.29■□□□□ 0.2
HMGN1-220ENST00000492280 ANP32AP39687 249 aaKnown RBP16.29■□□□□ 0.2
HMGN1-220ENST00000492280 PRAM1Q96QH2 718 aa16.29■□□□□ 0.2
HMGN1-220ENST00000492280 STAG3Q9UJ98 1225 aa16.29■□□□□ 0.2
HMGN1-220ENST00000492280 RPGRIP1LQ68CZ1 1315 aa16.29■□□□□ 0.2
HMGN1-220ENST00000492280 EVC2Q86UK5 1308 aa16.29■□□□□ 0.2
HMGN1-220ENST00000492280 WWC1Q8IX03 1113 aa16.28■□□□□ 0.2
HMGN1-220ENST00000492280 CGNL1Q0VF96 1302 aa16.28■□□□□ 0.2
HMGN1-220ENST00000492280 FBLN1P23142 703 aa16.27■□□□□ 0.2
HMGN1-220ENST00000492280 TCP11L2Q8N4U5 519 aa16.27■□□□□ 0.2
HMGN1-220ENST00000492280 PREX1Q8TCU6 1659 aa16.27■□□□□ 0.2
HMGN1-220ENST00000492280 TNNQ9UQP3 1299 aa16.27■□□□□ 0.19
HMGN1-220ENST00000492280 A0A1W2PP64 1363 aa16.27■□□□□ 0.19
HMGN1-220ENST00000492280 POLR3AO14802 1390 aaPredicted RBP16.27■□□□□ 0.19
HMGN1-220ENST00000492280 NKTRP30414 1462 aaKnown RBP16.26■□□□□ 0.19
HMGN1-220ENST00000492280 FRAT1Q92837 279 aaPredicted RBP16.26■□□□□ 0.19
HMGN1-220ENST00000492280 POGKQ9P215 609 aa16.26■□□□□ 0.19
HMGN1-220ENST00000492280 RGS3P49796 1198 aa16.25■□□□□ 0.19
HMGN1-220ENST00000492280 SLC24A1O60721 1099 aa16.25■□□□□ 0.19
HMGN1-220ENST00000492280 U2AF1L5P0DN76 240 aaPredicted RBP16.25■□□□□ 0.19
HMGN1-220ENST00000492280 U2AF1Q01081 240 aaKnown RBP eCLIP16.25■□□□□ 0.194e-7■■■■■ 29.1
HMGN1-220ENST00000492280 TRMT2AQ8IZ69 625 aaKnown RBP16.25■□□□□ 0.19
HMGN1-220ENST00000492280 PANK1Q8TE04 598 aa16.25■□□□□ 0.19
HMGN1-220ENST00000492280 TCERG1O14776 1098 aaKnown RBP16.25■□□□□ 0.19
HMGN1-220ENST00000492280 E9PSI1 815 aa16.24■□□□□ 0.19
HMGN1-220ENST00000492280 U2SURPO15042 1029 aaKnown RBP16.24■□□□□ 0.19
HMGN1-220ENST00000492280 CANXP27824 592 aaKnown RBP16.23■□□□□ 0.19
HMGN1-220ENST00000492280 WAPLQ7Z5K2 1190 aa16.23■□□□□ 0.19
HMGN1-220ENST00000492280 IPO9Q96P70 1041 aaKnown RBP16.23■□□□□ 0.19
HMGN1-220ENST00000492280 SLC52A1Q9NWF4 448 aa16.23■□□□□ 0.19
HMGN1-220ENST00000492280 TMEM131LA2VDJ0 1609 aa16.23■□□□□ 0.19
HMGN1-220ENST00000492280 RIMBP3CA6NJZ7 1639 aa16.23■□□□□ 0.19
HMGN1-220ENST00000492280 RIMBP3BA6NNM3 1639 aa16.23■□□□□ 0.19
HMGN1-220ENST00000492280 RIMBP3Q9UFD9 1639 aa16.23■□□□□ 0.19
HMGN1-220ENST00000492280 ANKRD36BQ8N2N9 1353 aa16.23■□□□□ 0.19
HMGN1-220ENST00000492280 BACH2Q9BYV9 841 aa16.23■□□□□ 0.19
HMGN1-220ENST00000492280 COG6Q9Y2V7 657 aa16.23■□□□□ 0.19
HMGN1-220ENST00000492280 KDM2BQ8NHM5 1336 aa16.22■□□□□ 0.19
HMGN1-220ENST00000492280 ARHGAP31Q2M1Z3 1444 aa16.21■□□□□ 0.19
HMGN1-220ENST00000492280 RUNDC1Q96C34 613 aa16.21■□□□□ 0.19
HMGN1-220ENST00000492280 DNAJC5Q9H3Z4 198 aa16.21■□□□□ 0.19
HMGN1-220ENST00000492280 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.2■□□□□ 0.18
HMGN1-220ENST00000492280 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.2■□□□□ 0.18
HMGN1-220ENST00000492280 CLUAP1Q96AJ1 413 aa16.2■□□□□ 0.18
HMGN1-220ENST00000492280 PTPRMP28827 1452 aa16.2■□□□□ 0.18
HMGN1-220ENST00000492280 YTHDC2Q9H6S0 1430 aaKnown RBP16.2■□□□□ 0.18
HMGN1-220ENST00000492280 DIP2BQ9P265 1576 aa16.2■□□□□ 0.18
HMGN1-220ENST00000492280 TSR2Q969E8 191 aaKnown RBP16.19■□□□□ 0.18
HMGN1-220ENST00000492280 PPM1GO15355 546 aaPredicted RBP16.19■□□□□ 0.18
HMGN1-220ENST00000492280 CFAP53Q96M91 514 aa16.18■□□□□ 0.18
HMGN1-220ENST00000492280 CABP1Q9NZU7 370 aa16.18■□□□□ 0.18
HMGN1-220ENST00000492280 ZBTB47Q9UFB7 747 aaPredicted RBP16.18■□□□□ 0.18
HMGN1-220ENST00000492280 CLTCQ00610 1675 aaKnown RBP16.18■□□□□ 0.18
HMGN1-220ENST00000492280 PLPPR3Q6T4P5 718 aa16.18■□□□□ 0.18
HMGN1-220ENST00000492280 IQSEC2Q5JU85 1478 aa16.17■□□□□ 0.18
HMGN1-220ENST00000492280 NCKAP5LQ9HCH0 1330 aa16.17■□□□□ 0.18
HMGN1-220ENST00000492280 IGHDP01880 384 aa16.17■□□□□ 0.18
HMGN1-220ENST00000492280 CDK19Q9BWU1 502 aa16.17■□□□□ 0.18
HMGN1-220ENST00000492280 LAS1LQ9Y4W2 734 aaKnown RBP16.17■□□□□ 0.18
HMGN1-220ENST00000492280 FYB1O15117 783 aa16.17■□□□□ 0.18
HMGN1-220ENST00000492280 RLBP1P12271 317 aa16.16■□□□□ 0.18
HMGN1-220ENST00000492280 ALKQ9UM73 1620 aa16.15■□□□□ 0.18
HMGN1-220ENST00000492280 SLC4A3P48751 1232 aa16.15■□□□□ 0.18
HMGN1-220ENST00000492280 CENPQQ7L2Z9 268 aaPredicted RBP16.15■□□□□ 0.18
HMGN1-220ENST00000492280 CD163L1Q9NR16 1453 aa16.15■□□□□ 0.18
HMGN1-220ENST00000492280 ABCC11Q96J66 1382 aa16.14■□□□□ 0.17
HMGN1-220ENST00000492280 USP32Q8NFA0 1604 aa16.14■□□□□ 0.17
HMGN1-220ENST00000492280 RARSP54136 660 aaKnown RBP16.13■□□□□ 0.17
HMGN1-220ENST00000492280 MS4A1P11836 297 aa16.12■□□□□ 0.17
HMGN1-220ENST00000492280 ZRANB1Q9UGI0 708 aa16.12■□□□□ 0.17
HMGN1-220ENST00000492280 ZFYVE9O95405 1425 aa16.11■□□□□ 0.17
HMGN1-220ENST00000492280 TXNDC2Q86VQ3 553 aa16.11■□□□□ 0.17
HMGN1-220ENST00000492280 NUTM2FA1L443 756 aa16.1■□□□□ 0.17
HMGN1-220ENST00000492280 TERF2IPQ9NYB0 399 aa16.1■□□□□ 0.17
HMGN1-220ENST00000492280 A2ML1A8K2U0 1454 aa16.1■□□□□ 0.17
HMGN1-220ENST00000492280 PHF23Q9BUL5 403 aaPredicted RBP16.1■□□□□ 0.17
HMGN1-220ENST00000492280 RIMS2Q9UQ26 1411 aa16.09■□□□□ 0.17
HMGN1-220ENST00000492280 ATAD2Q6PL18 1390 aa16.09■□□□□ 0.17
HMGN1-220ENST00000492280 C8orf34Q49A92 452 aa16.09■□□□□ 0.17
HMGN1-220ENST00000492280 NLRP1Q9C000 1473 aa16.08■□□□□ 0.17
HMGN1-220ENST00000492280 HDGFL2Q7Z4V5 671 aaPredicted RBP16.08■□□□□ 0.16
HMGN1-220ENST00000492280 NSD2O96028 1365 aa16.08■□□□□ 0.16
HMGN1-220ENST00000492280 HMOX1P09601 288 aa16.08■□□□□ 0.16
HMGN1-220ENST00000492280 ESF1Q9H501 851 aaKnown RBP16.08■□□□□ 0.16
HMGN1-220ENST00000492280 EXOSC9Q06265 439 aaKnown RBP16.07■□□□□ 0.16
HMGN1-220ENST00000492280 METP08581 1390 aa16.07■□□□□ 0.16
HMGN1-220ENST00000492280 ARHGEF40Q8TER5 1519 aa16.07■□□□□ 0.16
HMGN1-220ENST00000492280 MAPK8IP3Q9UPT6 1336 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 142.1 ms