RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 ADGRB1O14514 1584 aa21.99■■□□□ 1.11
USP39-217ENST00000491659 PLEKHH1Q9ULM0 1364 aa21.99■■□□□ 1.11
USP39-217ENST00000491659 FMN2Q9NZ56 1722 aa21.98■■□□□ 1.11
USP39-217ENST00000491659 DLC1Q96QB1 1528 aa21.98■■□□□ 1.11
USP39-217ENST00000491659 WAPLQ7Z5K2 1190 aa21.98■■□□□ 1.11
USP39-217ENST00000491659 SPATA31A6Q5VVP1 1343 aa21.96■■□□□ 1.11
USP39-217ENST00000491659 SIRT1Q96EB6 747 aa21.95■■□□□ 1.1
USP39-217ENST00000491659 KIAA1210Q9ULL0 1709 aa21.93■■□□□ 1.1
USP39-217ENST00000491659 KIF1AQ12756 1690 aa21.91■■□□□ 1.1
USP39-217ENST00000491659 LRP6O75581 1613 aa21.91■■□□□ 1.1
USP39-217ENST00000491659 LRRC59Q96AG4 307 aaKnown RBP21.91■■□□□ 1.1
USP39-217ENST00000491659 ORAI2Q96SN7 254 aa21.91■■□□□ 1.1
USP39-217ENST00000491659 DDX17Q92841 729 aaKnown RBP21.9■■□□□ 1.1
USP39-217ENST00000491659 ADGRB2O60241 1585 aa21.9■■□□□ 1.1
USP39-217ENST00000491659 ARHGEF28Q8N1W1 1705 aaKnown RBP21.89■■□□□ 1.1
USP39-217ENST00000491659 PRAM1Q96QH2 718 aa21.89■■□□□ 1.09
USP39-217ENST00000491659 POGKQ9P215 609 aa21.89■■□□□ 1.09
USP39-217ENST00000491659 SOCS7O14512 581 aa21.88■■□□□ 1.09
USP39-217ENST00000491659 ESCO1Q5FWF5 840 aa21.88■■□□□ 1.09
USP39-217ENST00000491659 RGPD8O14715 1765 aaPredicted RBP21.87■■□□□ 1.09
USP39-217ENST00000491659 MEX3CQ5U5Q3 659 aaKnown RBP21.87■■□□□ 1.09
USP39-217ENST00000491659 NUTM2FA1L443 756 aa21.86■■□□□ 1.09
USP39-217ENST00000491659 SAFB2Q14151 953 aaKnown RBP eCLIP21.86■■□□□ 1.09
USP39-217ENST00000491659 RGS17Q9UGC6 210 aaPredicted RBP21.86■■□□□ 1.09
USP39-217ENST00000491659 TRAK1Q9UPV9 953 aa21.86■■□□□ 1.09
USP39-217ENST00000491659 PNPLA6Q8IY17 1366 aa21.86■■□□□ 1.09
USP39-217ENST00000491659 SOS2Q07890 1332 aaPredicted RBP21.85■■□□□ 1.09
USP39-217ENST00000491659 NPHP3Q7Z494 1330 aa21.85■■□□□ 1.09
USP39-217ENST00000491659 TRIM26Q12899 539 aaPredicted RBP21.84■■□□□ 1.09
USP39-217ENST00000491659 NUTM2BA6NNL0 878 aaPredicted RBP21.83■■□□□ 1.09
USP39-217ENST00000491659 NUTM2EB1AL46 878 aaPredicted RBP21.83■■□□□ 1.09
USP39-217ENST00000491659 NUTM2AQ8IVF1 878 aaPredicted RBP21.83■■□□□ 1.09
USP39-217ENST00000491659 PXDNQ92626 1479 aa21.83■■□□□ 1.08
USP39-217ENST00000491659 COL22A1Q8NFW1 1626 aaPredicted RBP21.82■■□□□ 1.08
USP39-217ENST00000491659 USP32Q8NFA0 1604 aa21.81■■□□□ 1.08
USP39-217ENST00000491659 ANKARQ7Z5J8 1434 aa21.8■■□□□ 1.08
USP39-217ENST00000491659 EIF3AQ14152 1382 aaKnown RBP21.79■■□□□ 1.08
USP39-217ENST00000491659 FOXO3O43524 673 aa21.78■■□□□ 1.08
USP39-217ENST00000491659 TULP4Q9NRJ4 1543 aa21.77■■□□□ 1.08
USP39-217ENST00000491659 SIN3AQ96ST3 1273 aa21.77■■□□□ 1.08
USP39-217ENST00000491659 ITSN1Q15811 1721 aa21.77■■□□□ 1.08
USP39-217ENST00000491659 MINK1Q8N4C8 1332 aaPredicted RBP21.77■■□□□ 1.07
USP39-217ENST00000491659 NEUROD1Q13562 356 aa21.76■■□□□ 1.07
USP39-217ENST00000491659 POTEAQ6S8J7 498 aa21.76■■□□□ 1.07
USP39-217ENST00000491659 HIRIP3Q9BW71 556 aaPredicted RBP21.76■■□□□ 1.07
USP39-217ENST00000491659 XPCQ01831 940 aaPredicted RBP21.75■■□□□ 1.07
USP39-217ENST00000491659 ZNF772Q68DY9 489 aaPredicted RBP21.75■■□□□ 1.07
USP39-217ENST00000491659 L3MBTL2Q969R5 705 aa21.75■■□□□ 1.07
USP39-217ENST00000491659 PHF8Q9UPP1 1060 aa21.75■■□□□ 1.07
USP39-217ENST00000491659 TRPM1Q7Z4N2 1603 aa21.75■■□□□ 1.07
USP39-217ENST00000491659 MARF1Q9Y4F3 1742 aaKnown RBP21.74■■□□□ 1.07
USP39-217ENST00000491659 WASLO00401 505 aaPredicted RBP21.71■■□□□ 1.07
USP39-217ENST00000491659 NBPF1Q3BBV0 1214 aa21.71■■□□□ 1.07
USP39-217ENST00000491659 QRICH2Q9H0J4 1663 aa21.7■■□□□ 1.06
USP39-217ENST00000491659 C8orf37Q96NL8 207 aa21.7■■□□□ 1.06
USP39-217ENST00000491659 AFF2P51816 1311 aa21.7■■□□□ 1.06
USP39-217ENST00000491659 TNS3Q68CZ2 1445 aa21.7■■□□□ 1.06
USP39-217ENST00000491659 ADAMTS2O95450 1211 aa21.69■■□□□ 1.06
USP39-217ENST00000491659 KRT28Q7Z3Y7 464 aa21.69■■□□□ 1.06
USP39-217ENST00000491659 PSME1Q06323 249 aa21.68■■□□□ 1.06
USP39-217ENST00000491659 SPATA31A3Q5VYP0 1347 aa21.68■■□□□ 1.06
USP39-217ENST00000491659 TOPAZ1Q8N9V7 1692 aa21.67■■□□□ 1.06
USP39-217ENST00000491659 ATP7BP35670 1465 aa21.67■■□□□ 1.06
USP39-217ENST00000491659 TRPM3Q9HCF6 1732 aaPredicted RBP21.66■■□□□ 1.06
USP39-217ENST00000491659 PRR36Q9H6K5 1346 aa21.66■■□□□ 1.06
USP39-217ENST00000491659 PMFBP1Q8TBY8 1022 aa21.66■■□□□ 1.06
USP39-217ENST00000491659 ABCA3Q99758 1704 aa21.66■■□□□ 1.06
USP39-217ENST00000491659 SBNO1A3KN83 1393 aa21.65■■□□□ 1.06
USP39-217ENST00000491659 TONSLQ96HA7 1378 aa21.64■■□□□ 1.06
USP39-217ENST00000491659 CENPJQ9HC77 1338 aaPredicted RBP21.64■■□□□ 1.05
USP39-217ENST00000491659 NGLY1Q96IV0 654 aa21.64■■□□□ 1.05
USP39-217ENST00000491659 ROCK2O75116 1388 aaKnown RBP21.63■■□□□ 1.05
USP39-217ENST00000491659 GPRASP1Q5JY77 1395 aa21.63■■□□□ 1.05
USP39-217ENST00000491659 ARHGEF10O15013 1369 aa21.62■■□□□ 1.05
USP39-217ENST00000491659 ALS2Q96Q42 1657 aa21.62■■□□□ 1.05
USP39-217ENST00000491659 CDK19Q9BWU1 502 aa21.61■■□□□ 1.05
USP39-217ENST00000491659 RXRBP28702 533 aa21.6■■□□□ 1.05
USP39-217ENST00000491659 NUDT16Q96DE0 195 aaKnown RBP21.6■■□□□ 1.05
USP39-217ENST00000491659 LMOD2Q6P5Q4 547 aa21.59■■□□□ 1.05
USP39-217ENST00000491659 NGDNQ8NEJ9 315 aaKnown RBP21.59■■□□□ 1.05
USP39-217ENST00000491659 CDK12Q9NYV4 1490 aaPredicted RBP21.58■■□□□ 1.05
USP39-217ENST00000491659 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.58■■□□□ 1.05
USP39-217ENST00000491659 HAP1P54257 671 aaPredicted RBP21.58■■□□□ 1.05
USP39-217ENST00000491659 USP21Q9UK80 565 aa21.57■■□□□ 1.04
USP39-217ENST00000491659 QTRT2Q9H974 415 aaKnown RBP21.56■■□□□ 1.04
USP39-217ENST00000491659 SRPK2P78362 688 aaKnown RBP21.55■■□□□ 1.04
USP39-217ENST00000491659 FNBP4Q8N3X1 1017 aaPredicted RBP21.55■■□□□ 1.04
USP39-217ENST00000491659 PLCH1Q4KWH8 1693 aa21.55■■□□□ 1.04
USP39-217ENST00000491659 RALGAPBQ86X10 1494 aa21.54■■□□□ 1.04
USP39-217ENST00000491659 NBPF8Q3BBV2 869 aa21.54■■□□□ 1.04
USP39-217ENST00000491659 CCDC61Q9Y6R9 512 aa21.54■■□□□ 1.04
USP39-217ENST00000491659 CRYBG1Q9Y4K1 1723 aa21.54■■□□□ 1.04
USP39-217ENST00000491659 PLEKHG5O94827 1062 aa21.53■■□□□ 1.04
USP39-217ENST00000491659 RBM6P78332 1123 aaKnown RBP21.53■■□□□ 1.04
USP39-217ENST00000491659 NWD2Q9ULI1 1742 aa21.52■■□□□ 1.04
USP39-217ENST00000491659 POLR3AO14802 1390 aaPredicted RBP21.52■■□□□ 1.04
USP39-217ENST00000491659 TRPC5Q9UL62 973 aaPredicted RBP21.52■■□□□ 1.04
USP39-217ENST00000491659 ATRNO75882 1429 aa21.52■■□□□ 1.04
USP39-217ENST00000491659 PPIP5K1Q6PFW1 1433 aa21.52■■□□□ 1.04
USP39-217ENST00000491659 PAK3O75914 559 aaPredicted RBP21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 105.2 ms