RNA–Protein interactions for RNA: ENST00000491183.5

HMGN1-219, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 527 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-219ENST00000491183 KNDC1Q76NI1 1749 aa26.49■■□□□ 1.83
HMGN1-219ENST00000491183 YTHDC2Q9H6S0 1430 aaKnown RBP26.48■■□□□ 1.83
HMGN1-219ENST00000491183 PLEKHH1Q9ULM0 1364 aa26.48■■□□□ 1.83
HMGN1-219ENST00000491183 LRRC59Q96AG4 307 aaKnown RBP26.48■■□□□ 1.83
HMGN1-219ENST00000491183 LAMC1P11047 1609 aa26.46■■□□□ 1.83
HMGN1-219ENST00000491183 CDC42BPGQ6DT37 1551 aa26.46■■□□□ 1.83
HMGN1-219ENST00000491183 NUTM2BA6NNL0 878 aaPredicted RBP26.44■■□□□ 1.82
HMGN1-219ENST00000491183 NUTM2EB1AL46 878 aaPredicted RBP26.44■■□□□ 1.82
HMGN1-219ENST00000491183 NUTM2AQ8IVF1 878 aaPredicted RBP26.44■■□□□ 1.82
HMGN1-219ENST00000491183 SIRT1Q96EB6 747 aa26.44■■□□□ 1.82
HMGN1-219ENST00000491183 MEX3CQ5U5Q3 659 aaKnown RBP26.43■■□□□ 1.82
HMGN1-219ENST00000491183 DHX57Q6P158 1386 aaKnown RBP26.42■■□□□ 1.82
HMGN1-219ENST00000491183 SOS2Q07890 1332 aaPredicted RBP26.41■■□□□ 1.82
HMGN1-219ENST00000491183 PNPLA6Q8IY17 1366 aa26.41■■□□□ 1.82
HMGN1-219ENST00000491183 ESCO1Q5FWF5 840 aa26.4■■□□□ 1.82
HMGN1-219ENST00000491183 KDM2AQ9Y2K7 1162 aa26.4■■□□□ 1.82
HMGN1-219ENST00000491183 NUTM2FA1L443 756 aa26.39■■□□□ 1.82
HMGN1-219ENST00000491183 DCAF11Q8TEB1 546 aa26.39■■□□□ 1.82
HMGN1-219ENST00000491183 FMN2Q9NZ56 1722 aa26.34■■□□□ 1.81
HMGN1-219ENST00000491183 ADGRB1O14514 1584 aa26.34■■□□□ 1.81
HMGN1-219ENST00000491183 ZNF772Q68DY9 489 aaPredicted RBP26.34■■□□□ 1.81
HMGN1-219ENST00000491183 PRAM1Q96QH2 718 aa26.34■■□□□ 1.81
HMGN1-219ENST00000491183 FOXO3O43524 673 aa26.33■■□□□ 1.81
HMGN1-219ENST00000491183 STAC3Q96MF2 364 aa26.33■■□□□ 1.81
HMGN1-219ENST00000491183 NPHP3Q7Z494 1330 aa26.32■■□□□ 1.8
HMGN1-219ENST00000491183 SAFB2Q14151 953 aaKnown RBP eCLIP26.31■■□□□ 1.8
HMGN1-219ENST00000491183 DLC1Q96QB1 1528 aa26.3■■□□□ 1.8
HMGN1-219ENST00000491183 PXDNQ92626 1479 aa26.3■■□□□ 1.8
HMGN1-219ENST00000491183 XPCQ01831 940 aaPredicted RBP26.29■■□□□ 1.8
HMGN1-219ENST00000491183 TRAK1Q9UPV9 953 aa26.29■■□□□ 1.8
HMGN1-219ENST00000491183 POGKQ9P215 609 aa26.28■■□□□ 1.8
HMGN1-219ENST00000491183 AFF2P51816 1311 aa26.28■■□□□ 1.8
HMGN1-219ENST00000491183 RGPD8O14715 1765 aaPredicted RBP26.28■■□□□ 1.8
HMGN1-219ENST00000491183 C8orf37Q96NL8 207 aa26.27■■□□□ 1.8
HMGN1-219ENST00000491183 ADAMTS2O95450 1211 aa26.26■■□□□ 1.79
HMGN1-219ENST00000491183 COL22A1Q8NFW1 1626 aaPredicted RBP26.25■■□□□ 1.79
HMGN1-219ENST00000491183 KIF1AQ12756 1690 aa26.22■■□□□ 1.79
HMGN1-219ENST00000491183 RXRBP28702 533 aa26.21■■□□□ 1.79
HMGN1-219ENST00000491183 NGLY1Q96IV0 654 aa26.2■■□□□ 1.78
HMGN1-219ENST00000491183 PHF8Q9UPP1 1060 aa26.2■■□□□ 1.78
HMGN1-219ENST00000491183 KRT28Q7Z3Y7 464 aa26.19■■□□□ 1.78
HMGN1-219ENST00000491183 HIRIP3Q9BW71 556 aaPredicted RBP26.19■■□□□ 1.78
HMGN1-219ENST00000491183 ADGRB2O60241 1585 aa26.19■■□□□ 1.78
HMGN1-219ENST00000491183 USP32Q8NFA0 1604 aa26.17■■□□□ 1.78
HMGN1-219ENST00000491183 SPATA31A3Q5VYP0 1347 aa26.17■■□□□ 1.78
HMGN1-219ENST00000491183 MINK1Q8N4C8 1332 aaPredicted RBP26.17■■□□□ 1.78
HMGN1-219ENST00000491183 QTRT2Q9H974 415 aaKnown RBP26.17■■□□□ 1.78
HMGN1-219ENST00000491183 ANKARQ7Z5J8 1434 aa26.14■■□□□ 1.78
HMGN1-219ENST00000491183 FNBP4Q8N3X1 1017 aaPredicted RBP26.13■■□□□ 1.77
HMGN1-219ENST00000491183 PMFBP1Q8TBY8 1022 aa26.13■■□□□ 1.77
HMGN1-219ENST00000491183 ARHGEF28Q8N1W1 1705 aaKnown RBP26.13■■□□□ 1.77
HMGN1-219ENST00000491183 WASLO00401 505 aaPredicted RBP26.12■■□□□ 1.77
HMGN1-219ENST00000491183 PRR36Q9H6K5 1346 aa26.12■■□□□ 1.77
HMGN1-219ENST00000491183 CDK12Q9NYV4 1490 aaPredicted RBP26.11■■□□□ 1.77
HMGN1-219ENST00000491183 KIAA1210Q9ULL0 1709 aa26.11■■□□□ 1.77
HMGN1-219ENST00000491183 RBM6P78332 1123 aaKnown RBP26.11■■□□□ 1.77
HMGN1-219ENST00000491183 NBPF1Q3BBV0 1214 aa26.11■■□□□ 1.77
HMGN1-219ENST00000491183 USP21Q9UK80 565 aa26.11■■□□□ 1.77
HMGN1-219ENST00000491183 PSME1Q06323 249 aa26.1■■□□□ 1.77
HMGN1-219ENST00000491183 MARF1Q9Y4F3 1742 aaKnown RBP26.1■■□□□ 1.77
HMGN1-219ENST00000491183 SIN3AQ96ST3 1273 aa26.09■■□□□ 1.77
HMGN1-219ENST00000491183 TULP4Q9NRJ4 1543 aa26.07■■□□□ 1.76
HMGN1-219ENST00000491183 SBNO1A3KN83 1393 aa26.07■■□□□ 1.76
HMGN1-219ENST00000491183 TNS3Q68CZ2 1445 aa26.06■■□□□ 1.76
HMGN1-219ENST00000491183 L3MBTL2Q969R5 705 aa26.06■■□□□ 1.76
HMGN1-219ENST00000491183 EIF3AQ14152 1382 aaKnown RBP26.06■■□□□ 1.76
HMGN1-219ENST00000491183 TRPC5Q9UL62 973 aaPredicted RBP26.04■■□□□ 1.76
HMGN1-219ENST00000491183 RGS12O14924 1447 aa26.04■■□□□ 1.76
HMGN1-219ENST00000491183 BCL9LQ86UU0 1499 aa26.04■■□□□ 1.76
HMGN1-219ENST00000491183 CABLES1Q8TDN4 633 aa26.03■■□□□ 1.76
HMGN1-219ENST00000491183 UPF1Q92900 1129 aaKnown RBP eCLIP26.02■■□□□ 1.76
HMGN1-219ENST00000491183 ATRNO75882 1429 aa26.02■■□□□ 1.76
HMGN1-219ENST00000491183 LMOD2Q6P5Q4 547 aa26.01■■□□□ 1.75
HMGN1-219ENST00000491183 TRPM3Q9HCF6 1732 aaPredicted RBP26■■□□□ 1.75
HMGN1-219ENST00000491183 NEUROD1Q13562 356 aa26■■□□□ 1.75
HMGN1-219ENST00000491183 NUDT16Q96DE0 195 aaKnown RBP26■■□□□ 1.75
HMGN1-219ENST00000491183 CDK19Q9BWU1 502 aa26■■□□□ 1.75
HMGN1-219ENST00000491183 PLEKHG5O94827 1062 aa25.99■■□□□ 1.75
HMGN1-219ENST00000491183 ARHGEF10O15013 1369 aa25.98■■□□□ 1.75
HMGN1-219ENST00000491183 ATP7BP35670 1465 aa25.98■■□□□ 1.75
HMGN1-219ENST00000491183 GPRASP1Q5JY77 1395 aa25.97■■□□□ 1.75
HMGN1-219ENST00000491183 NGDNQ8NEJ9 315 aaKnown RBP25.97■■□□□ 1.75
HMGN1-219ENST00000491183 SLIT2O94813 1529 aa25.97■■□□□ 1.75
HMGN1-219ENST00000491183 HAP1P54257 671 aaPredicted RBP25.96■■□□□ 1.75
HMGN1-219ENST00000491183 ABCA3Q99758 1704 aa25.95■■□□□ 1.74
HMGN1-219ENST00000491183 ALS2Q96Q42 1657 aa25.95■■□□□ 1.74
HMGN1-219ENST00000491183 UNC5CLQ8IV45 518 aa25.94■■□□□ 1.74
HMGN1-219ENST00000491183 ITSN1Q15811 1721 aa25.94■■□□□ 1.74
HMGN1-219ENST00000491183 GJD4Q96KN9 370 aaPredicted RBP25.93■■□□□ 1.74
HMGN1-219ENST00000491183 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.93■■□□□ 1.74
HMGN1-219ENST00000491183 CENPJQ9HC77 1338 aaPredicted RBP25.91■■□□□ 1.74
HMGN1-219ENST00000491183 TRPM1Q7Z4N2 1603 aa25.9■■□□□ 1.74
HMGN1-219ENST00000491183 CCDC61Q9Y6R9 512 aa25.9■■□□□ 1.74
HMGN1-219ENST00000491183 FAM83GA6ND36 823 aa25.89■■□□□ 1.74
HMGN1-219ENST00000491183 PAK3O75914 559 aaPredicted RBP25.89■■□□□ 1.74
HMGN1-219ENST00000491183 TOPAZ1Q8N9V7 1692 aa25.89■■□□□ 1.73
HMGN1-219ENST00000491183 ACEP12821 1306 aa25.88■■□□□ 1.73
HMGN1-219ENST00000491183 PLEKHG3A1L390 1219 aa25.87■■□□□ 1.73
HMGN1-219ENST00000491183 POLR3AO14802 1390 aaPredicted RBP25.86■■□□□ 1.73
HMGN1-219ENST00000491183 NBPF8Q3BBV2 869 aa25.86■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms