RNA–Protein interactions for RNA: ENST00000489357.5

VTI1A-207, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 3

Gene VTI1A, Length 444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-207ENST00000489357 LAMC1P11047 1609 aa11.76□□□□□ -0.53
VTI1A-207ENST00000489357 YTHDC1Q96MU7 727 aaKnown RBP11.76□□□□□ -0.53
VTI1A-207ENST00000489357 SLIT1O75093 1534 aa11.76□□□□□ -0.53
VTI1A-207ENST00000489357 NEURL4Q96JN8 1562 aa11.75□□□□□ -0.53
VTI1A-207ENST00000489357 TMEM131LA2VDJ0 1609 aa11.75□□□□□ -0.53
VTI1A-207ENST00000489357 VGFO15240 615 aaPredicted RBP11.75□□□□□ -0.53
VTI1A-207ENST00000489357 ILDR1Q86SU0 546 aaPredicted RBP11.75□□□□□ -0.53
VTI1A-207ENST00000489357 STAC3Q96MF2 364 aa11.75□□□□□ -0.53
VTI1A-207ENST00000489357 PCDHB8Q9UN66 801 aa11.75□□□□□ -0.53
VTI1A-207ENST00000489357 GTF3C3Q9Y5Q9 886 aa11.75□□□□□ -0.53
VTI1A-207ENST00000489357 CCDC144AA2RUR9 1427 aa11.75□□□□□ -0.53
VTI1A-207ENST00000489357 IFNL1Q8IU54 200 aa11.74□□□□□ -0.53
VTI1A-207ENST00000489357 WASHC2AQ641Q2 1341 aa11.74□□□□□ -0.53
VTI1A-207ENST00000489357 ROCK2O75116 1388 aaKnown RBP11.74□□□□□ -0.53
VTI1A-207ENST00000489357 CCDC7Q96M83 1385 aa11.74□□□□□ -0.53
VTI1A-207ENST00000489357 MED14O60244 1454 aa11.74□□□□□ -0.53
VTI1A-207ENST00000489357 TRPM2O94759 1503 aa11.74□□□□□ -0.53
VTI1A-207ENST00000489357 NBPF8Q3BBV2 869 aa11.73□□□□□ -0.53
VTI1A-207ENST00000489357 NCKAP5LQ9HCH0 1330 aa11.73□□□□□ -0.53
VTI1A-207ENST00000489357 ADGRB3O60242 1522 aa11.72□□□□□ -0.53
VTI1A-207ENST00000489357 CLTCL1P53675 1640 aa11.71□□□□□ -0.53
VTI1A-207ENST00000489357 TMEM2Q9UHN6 1383 aa11.71□□□□□ -0.53
VTI1A-207ENST00000489357 LTKP29376 864 aa11.71□□□□□ -0.53
VTI1A-207ENST00000489357 CLCN6P51797 869 aa11.71□□□□□ -0.53
VTI1A-207ENST00000489357 ZFYVE9O95405 1425 aa11.7□□□□□ -0.54
VTI1A-207ENST00000489357 USP47Q96K76 1375 aa11.7□□□□□ -0.54
VTI1A-207ENST00000489357 KIF1BO60333 1816 aa11.7□□□□□ -0.54
VTI1A-207ENST00000489357 CHGAP10645 457 aaKnown RBP11.7□□□□□ -0.54
VTI1A-207ENST00000489357 ANKLE2Q86XL3 938 aa11.7□□□□□ -0.54
VTI1A-207ENST00000489357 MS4A3Q96HJ5 214 aa11.7□□□□□ -0.54
VTI1A-207ENST00000489357 TRPM1Q7Z4N2 1603 aa11.69□□□□□ -0.54
VTI1A-207ENST00000489357 PDAP1Q13442 181 aaKnown RBP11.69□□□□□ -0.54
VTI1A-207ENST00000489357 GPRASP1Q5JY77 1395 aa11.68□□□□□ -0.54
VTI1A-207ENST00000489357 PRAG1Q86YV5 1406 aa11.68□□□□□ -0.54
VTI1A-207ENST00000489357 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.67□□□□□ -0.54
VTI1A-207ENST00000489357 CERKQ8TCT0 537 aa11.67□□□□□ -0.54
VTI1A-207ENST00000489357 ZFP91Q96JP5 570 aaPredicted RBP11.67□□□□□ -0.54
VTI1A-207ENST00000489357 HIRIP3Q9BW71 556 aaPredicted RBP11.67□□□□□ -0.54
VTI1A-207ENST00000489357 SCAF11Q99590 1463 aaKnown RBP11.67□□□□□ -0.54
VTI1A-207ENST00000489357 KTN1Q86UP2 1357 aaKnown RBP11.67□□□□□ -0.54
VTI1A-207ENST00000489357 PSEN1P49768 467 aa11.66□□□□□ -0.54
VTI1A-207ENST00000489357 TXNDC2Q86VQ3 553 aa11.66□□□□□ -0.54
VTI1A-207ENST00000489357 HS6ST3Q8IZP7 471 aa11.66□□□□□ -0.54
VTI1A-207ENST00000489357 LTBP4Q8N2S1 1624 aa11.66□□□□□ -0.54
VTI1A-207ENST00000489357 IQGAP1P46940 1657 aa11.65□□□□□ -0.54
VTI1A-207ENST00000489357 KIF7Q2M1P5 1343 aa11.65□□□□□ -0.54
VTI1A-207ENST00000489357 STK25O00506 426 aa11.65□□□□□ -0.54
VTI1A-207ENST00000489357 FBXO41Q8TF61 875 aa11.65□□□□□ -0.54
VTI1A-207ENST00000489357 NPHP4O75161 1426 aaPredicted RBP11.65□□□□□ -0.54
VTI1A-207ENST00000489357 RIMS2Q9UQ26 1411 aa11.65□□□□□ -0.54
VTI1A-207ENST00000489357 GALR2O43603 387 aaPredicted RBP11.64□□□□□ -0.55
VTI1A-207ENST00000489357 ZNF335Q9H4Z2 1342 aaPredicted RBP11.63□□□□□ -0.55
VTI1A-207ENST00000489357 PELP1Q8IZL8 1130 aaKnown RBP11.63□□□□□ -0.55
VTI1A-207ENST00000489357 EID1Q9Y6B2 187 aa11.63□□□□□ -0.55
VTI1A-207ENST00000489357 NEXMIFQ5QGS0 1516 aa11.63□□□□□ -0.55
VTI1A-207ENST00000489357 RPGRIP1LQ68CZ1 1315 aa11.62□□□□□ -0.55
VTI1A-207ENST00000489357 PPLO60437 1756 aa11.62□□□□□ -0.55
VTI1A-207ENST00000489357 HDGFP51858 240 aaKnown RBP11.62□□□□□ -0.55
VTI1A-207ENST00000489357 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.62□□□□□ -0.55
VTI1A-207ENST00000489357 DCAF11Q8TEB1 546 aa11.62□□□□□ -0.55
VTI1A-207ENST00000489357 CARD11Q9BXL7 1154 aa11.62□□□□□ -0.55
VTI1A-207ENST00000489357 BCL11BQ9C0K0 894 aaPredicted RBP11.62□□□□□ -0.55
VTI1A-207ENST00000489357 KIAA1210Q9ULL0 1709 aa11.62□□□□□ -0.55
VTI1A-207ENST00000489357 PLEKHG1Q9ULL1 1385 aa11.62□□□□□ -0.55
VTI1A-207ENST00000489357 STRCP1A6NGW2 1772 aa11.62□□□□□ -0.55
VTI1A-207ENST00000489357 IFT172Q9UG01 1749 aa11.61□□□□□ -0.55
VTI1A-207ENST00000489357 GABBR2O75899 941 aa11.61□□□□□ -0.55
VTI1A-207ENST00000489357 PRKRIP1Q9H875 184 aaPredicted RBP11.61□□□□□ -0.55
VTI1A-207ENST00000489357 STK24Q9Y6E0 443 aa11.61□□□□□ -0.55
VTI1A-207ENST00000489357 NRXN3Q9Y4C0 1643 aa11.6□□□□□ -0.55
VTI1A-207ENST00000489357 BBXQ8WY36 941 aaPredicted RBP11.6□□□□□ -0.55
VTI1A-207ENST00000489357 ADAMTS13Q76LX8 1427 aa11.6□□□□□ -0.55
VTI1A-207ENST00000489357 CHD2O14647 1828 aaKnown RBP11.59□□□□□ -0.55
VTI1A-207ENST00000489357 C11orf95C9JLR9 678 aaPredicted RBP11.59□□□□□ -0.55
VTI1A-207ENST00000489357 SLC24A1O60721 1099 aa11.59□□□□□ -0.55
VTI1A-207ENST00000489357 TRPC6Q9Y210 931 aa11.59□□□□□ -0.55
VTI1A-207ENST00000489357 TBX22Q9Y458 520 aa11.59□□□□□ -0.55
VTI1A-207ENST00000489357 SETBP1Q9Y6X0 1596 aa11.58□□□□□ -0.55
VTI1A-207ENST00000489357 SP7Q8TDD2 431 aaPredicted RBP11.58□□□□□ -0.56
VTI1A-207ENST00000489357 MYOM2P54296 1465 aa11.57□□□□□ -0.56
VTI1A-207ENST00000489357 TIE1P35590 1138 aa11.57□□□□□ -0.56
VTI1A-207ENST00000489357 SETD1AO15047 1707 aaKnown RBP11.57□□□□□ -0.56
VTI1A-207ENST00000489357 IQSEC2Q5JU85 1478 aa11.57□□□□□ -0.56
VTI1A-207ENST00000489357 DIP2AQ14689 1571 aa11.56□□□□□ -0.56
VTI1A-207ENST00000489357 ZNF326Q5BKZ1 582 aaKnown RBP11.56□□□□□ -0.56
VTI1A-207ENST00000489357 TMEM106CQ9BVX2 250 aa11.56□□□□□ -0.56
VTI1A-207ENST00000489357 NRXN1Q9ULB1 1477 aa11.56□□□□□ -0.56
VTI1A-207ENST00000489357 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.55□□□□□ -0.56
VTI1A-207ENST00000489357 CPS1P31327 1500 aa11.55□□□□□ -0.56
VTI1A-207ENST00000489357 PIK3R4Q99570 1358 aa11.54□□□□□ -0.56
VTI1A-207ENST00000489357 NWD1Q149M9 1564 aa11.54□□□□□ -0.56
VTI1A-207ENST00000489357 XIRP1Q702N8 1843 aaKnown RBP11.54□□□□□ -0.56
VTI1A-207ENST00000489357 KCNA6P17658 529 aa11.54□□□□□ -0.56
VTI1A-207ENST00000489357 NUTM2DQ5VT03 806 aaPredicted RBP11.54□□□□□ -0.56
VTI1A-207ENST00000489357 SLC26A8Q96RN1 970 aa11.54□□□□□ -0.56
VTI1A-207ENST00000489357 RGL3Q3MIN7 710 aa11.53□□□□□ -0.56
VTI1A-207ENST00000489357 KDM2AQ9Y2K7 1162 aa11.53□□□□□ -0.56
VTI1A-207ENST00000489357 ADGRF5Q8IZF2 1346 aa11.53□□□□□ -0.56
VTI1A-207ENST00000489357 ST20-MTHFSA0A0A6YYL1 179 aa11.52□□□□□ -0.57
VTI1A-207ENST00000489357 RALBP1Q15311 655 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms