RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 BCL9LQ86UU0 1499 aa24.69■■□□□ 1.54
USP48-210ENST00000489108 ESCO1Q5FWF5 840 aa24.68■■□□□ 1.54
USP48-210ENST00000489108 MYOM2P54296 1465 aa24.67■■□□□ 1.54
USP48-210ENST00000489108 GJD4Q96KN9 370 aaPredicted RBP24.67■■□□□ 1.54
USP48-210ENST00000489108 NPHP3Q7Z494 1330 aa24.66■■□□□ 1.54
USP48-210ENST00000489108 XPCQ01831 940 aaPredicted RBP24.66■■□□□ 1.54
USP48-210ENST00000489108 HFM1A2PYH4 1435 aa24.64■■□□□ 1.54
USP48-210ENST00000489108 FOXO3O43524 673 aa24.64■■□□□ 1.54
USP48-210ENST00000489108 PPARGC1BQ86YN6 1023 aaKnown RBP24.63■■□□□ 1.53
USP48-210ENST00000489108 MARF1Q9Y4F3 1742 aaKnown RBP24.63■■□□□ 1.53
USP48-210ENST00000489108 PRAG1Q86YV5 1406 aa24.62■■□□□ 1.53
USP48-210ENST00000489108 PXDNQ92626 1479 aa24.62■■□□□ 1.53
USP48-210ENST00000489108 RPGRIP1LQ68CZ1 1315 aa24.6■■□□□ 1.53
USP48-210ENST00000489108 NUTM2FA1L443 756 aa24.58■■□□□ 1.53
USP48-210ENST00000489108 UNC5CLQ8IV45 518 aa24.57■■□□□ 1.52
USP48-210ENST00000489108 DEFB132Q7Z7B7 95 aa24.55■■□□□ 1.52
USP48-210ENST00000489108 LRPPRCP42704 1394 aaKnown RBP24.54■■□□□ 1.52
USP48-210ENST00000489108 CDC42BPGQ6DT37 1551 aa24.54■■□□□ 1.52
USP48-210ENST00000489108 BLMP54132 1417 aaPredicted RBP24.54■■□□□ 1.52
USP48-210ENST00000489108 WAPLQ7Z5K2 1190 aa24.54■■□□□ 1.52
USP48-210ENST00000489108 RALGAPBQ86X10 1494 aa24.53■■□□□ 1.52
USP48-210ENST00000489108 PPLO60437 1756 aa24.53■■□□□ 1.52
USP48-210ENST00000489108 STK26Q9P289 416 aa24.53■■□□□ 1.52
USP48-210ENST00000489108 GLI3P10071 1580 aa24.53■■□□□ 1.52
USP48-210ENST00000489108 NAIPQ13075 1403 aa24.52■■□□□ 1.52
USP48-210ENST00000489108 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.52■■□□□ 1.52
USP48-210ENST00000489108 SLIT2O94813 1529 aa24.51■■□□□ 1.51
USP48-210ENST00000489108 BRWD3Q6RI45 1802 aa24.51■■□□□ 1.51
USP48-210ENST00000489108 SPATA31A3Q5VYP0 1347 aa24.5■■□□□ 1.51
USP48-210ENST00000489108 SF3B2Q13435 895 aaKnown RBP24.48■■□□□ 1.51
USP48-210ENST00000489108 SEPT12Q8IYM1 358 aa24.48■■□□□ 1.51
USP48-210ENST00000489108 ADGRF5Q8IZF2 1346 aa24.48■■□□□ 1.51
USP48-210ENST00000489108 KRT28Q7Z3Y7 464 aa24.47■■□□□ 1.51
USP48-210ENST00000489108 SLC4A1APQ9BWU0 796 aaKnown RBP24.47■■□□□ 1.51
USP48-210ENST00000489108 PLEKHH1Q9ULM0 1364 aa24.44■■□□□ 1.5
USP48-210ENST00000489108 TMEM132EQ6IEE7 984 aa24.44■■□□□ 1.5
USP48-210ENST00000489108 CABLES1Q8TDN4 633 aa24.43■■□□□ 1.5
USP48-210ENST00000489108 PLEKHG5O94827 1062 aa24.42■■□□□ 1.5
USP48-210ENST00000489108 HAP1P54257 671 aaPredicted RBP24.42■■□□□ 1.5
USP48-210ENST00000489108 VPS72Q15906 364 aa24.42■■□□□ 1.5
USP48-210ENST00000489108 RGL3Q3MIN7 710 aa24.42■■□□□ 1.5
USP48-210ENST00000489108 TECPR2O15040 1411 aa24.42■■□□□ 1.5
USP48-210ENST00000489108 ONECUT3O60422 494 aaPredicted RBP24.41■■□□□ 1.5
USP48-210ENST00000489108 CCDC9Q9Y3X0 531 aaKnown RBP24.41■■□□□ 1.5
USP48-210ENST00000489108 USP32Q8NFA0 1604 aa24.41■■□□□ 1.5
USP48-210ENST00000489108 CCDC144AA2RUR9 1427 aa24.41■■□□□ 1.5
USP48-210ENST00000489108 ABCC11Q96J66 1382 aa24.41■■□□□ 1.5
USP48-210ENST00000489108 KRT27Q7Z3Y8 459 aa24.4■■□□□ 1.5
USP48-210ENST00000489108 RRBP1Q9P2E9 1410 aaKnown RBP24.4■■□□□ 1.5
USP48-210ENST00000489108 FMN2Q9NZ56 1722 aa24.39■■□□□ 1.5
USP48-210ENST00000489108 KIF1AQ12756 1690 aa24.37■■□□□ 1.49
USP48-210ENST00000489108 PSDA5PKW4 1024 aaPredicted RBP24.37■■□□□ 1.49
USP48-210ENST00000489108 PSME1Q06323 249 aa24.36■■□□□ 1.49
USP48-210ENST00000489108 PHF8Q9UPP1 1060 aa24.36■■□□□ 1.49
USP48-210ENST00000489108 RGPD8O14715 1765 aaPredicted RBP24.36■■□□□ 1.49
USP48-210ENST00000489108 LRP5O75197 1615 aa24.35■■□□□ 1.49
USP48-210ENST00000489108 TNS3Q68CZ2 1445 aa24.35■■□□□ 1.49
USP48-210ENST00000489108 LMOD2Q6P5Q4 547 aa24.34■■□□□ 1.49
USP48-210ENST00000489108 KNDC1Q76NI1 1749 aa24.34■■□□□ 1.49
USP48-210ENST00000489108 FAM83GA6ND36 823 aa24.33■■□□□ 1.49
USP48-210ENST00000489108 PLCH1Q4KWH8 1693 aa24.33■■□□□ 1.49
USP48-210ENST00000489108 NWD2Q9ULI1 1742 aa24.32■■□□□ 1.48
USP48-210ENST00000489108 ANKRD30BQ9BXX2 1392 aa24.32■■□□□ 1.48
USP48-210ENST00000489108 HRCP23327 699 aa24.32■■□□□ 1.48
USP48-210ENST00000489108 BAG6P46379 1132 aa24.32■■□□□ 1.48
USP48-210ENST00000489108 YTHDC2Q9H6S0 1430 aaKnown RBP24.32■■□□□ 1.48
USP48-210ENST00000489108 A0A0G2JS52 829 aa24.31■■□□□ 1.48
USP48-210ENST00000489108 MYT1Q01538 1121 aa24.31■■□□□ 1.48
USP48-210ENST00000489108 SIRT1Q96EB6 747 aa24.31■■□□□ 1.48
USP48-210ENST00000489108 SPATA31E1Q6ZUB1 1445 aa24.3■■□□□ 1.48
USP48-210ENST00000489108 IFT172Q9UG01 1749 aa24.3■■□□□ 1.48
USP48-210ENST00000489108 SBNO1A3KN83 1393 aa24.29■■□□□ 1.48
USP48-210ENST00000489108 FAM98CQ17RN3 349 aaKnown RBP24.28■■□□□ 1.48
USP48-210ENST00000489108 PIK3C2GO75747 1445 aa24.27■■□□□ 1.48
USP48-210ENST00000489108 EN1Q05925 392 aaPredicted RBP24.26■■□□□ 1.47
USP48-210ENST00000489108 ABCA3Q99758 1704 aa24.26■■□□□ 1.47
USP48-210ENST00000489108 ARHGEF10O15013 1369 aa24.26■■□□□ 1.47
USP48-210ENST00000489108 NRXN1Q9ULB1 1477 aa24.26■■□□□ 1.47
USP48-210ENST00000489108 SAFB2Q14151 953 aaKnown RBP eCLIP24.25■■□□□ 1.47
USP48-210ENST00000489108 PMFBP1Q8TBY8 1022 aa24.25■■□□□ 1.47
USP48-210ENST00000489108 C14orf93Q9H972 538 aaKnown RBP24.24■■□□□ 1.47
USP48-210ENST00000489108 BTG4Q9NY30 223 aa24.24■■□□□ 1.47
USP48-210ENST00000489108 FAM182BQ5T319 152 aa24.23■■□□□ 1.47
USP48-210ENST00000489108 R3HDM1Q15032 1099 aaKnown RBP24.21■■□□□ 1.47
USP48-210ENST00000489108 CFAP70Q5T0N1 1121 aa24.21■■□□□ 1.47
USP48-210ENST00000489108 PRAM1Q96QH2 718 aa24.21■■□□□ 1.47
USP48-210ENST00000489108 MPHOSPH9Q99550 1183 aa24.21■■□□□ 1.47
USP48-210ENST00000489108 DHX57Q6P158 1386 aaKnown RBP24.2■■□□□ 1.46
USP48-210ENST00000489108 NRAPQ86VF7 1730 aa24.2■■□□□ 1.46
USP48-210ENST00000489108 RGPD1P0DJD0 1748 aa24.15■■□□□ 1.46
USP48-210ENST00000489108 SPATA31A5Q5VU36 1347 aa24.15■■□□□ 1.46
USP48-210ENST00000489108 SPATA31A7Q8IWB4 1347 aa24.15■■□□□ 1.46
USP48-210ENST00000489108 POGKQ9P215 609 aa24.15■■□□□ 1.46
USP48-210ENST00000489108 EZH2Q15910 746 aaKnown RBP24.14■■□□□ 1.45
USP48-210ENST00000489108 COL14A1Q05707 1796 aaKnown RBP24.13■■□□□ 1.45
USP48-210ENST00000489108 TRPM3Q9HCF6 1732 aaPredicted RBP24.13■■□□□ 1.45
USP48-210ENST00000489108 ANKARQ7Z5J8 1434 aa24.12■■□□□ 1.45
USP48-210ENST00000489108 HIRIP3Q9BW71 556 aaPredicted RBP24.1■■□□□ 1.45
USP48-210ENST00000489108 GPRASP1Q5JY77 1395 aa24.1■■□□□ 1.45
USP48-210ENST00000489108 ALS2Q96Q42 1657 aa24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms