RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 STRCP1A6NGW2 1772 aa19.61■□□□□ 0.73
CUX1-209ENST00000487284 DISP3Q9P2K9 1392 aa19.61■□□□□ 0.73
CUX1-209ENST00000487284 SBNO2Q9Y2G9 1366 aa19.61■□□□□ 0.73
CUX1-209ENST00000487284 CCER2I3L3R5 266 aa19.61■□□□□ 0.73
CUX1-209ENST00000487284 SIRT1Q96EB6 747 aa19.6■□□□□ 0.73
CUX1-209ENST00000487284 MYOM1P52179 1685 aa19.59■□□□□ 0.73
CUX1-209ENST00000487284 DMRT2Q9Y5R5 561 aa19.57■□□□□ 0.72
CUX1-209ENST00000487284 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.57■□□□□ 0.72
CUX1-209ENST00000487284 TMF1P82094 1093 aa19.57■□□□□ 0.72
CUX1-209ENST00000487284 MINK1Q8N4C8 1332 aaPredicted RBP19.56■□□□□ 0.72
CUX1-209ENST00000487284 TULP4Q9NRJ4 1543 aa19.56■□□□□ 0.72
CUX1-209ENST00000487284 NKTRP30414 1462 aaKnown RBP19.56■□□□□ 0.72
CUX1-209ENST00000487284 POLR3GLQ9BT43 218 aa19.56■□□□□ 0.72
CUX1-209ENST00000487284 ZNF335Q9H4Z2 1342 aaPredicted RBP19.53■□□□□ 0.72
CUX1-209ENST00000487284 NALCNQ8IZF0 1738 aa19.52■□□□□ 0.72
CUX1-209ENST00000487284 ADGRB2O60241 1585 aa19.52■□□□□ 0.72
CUX1-209ENST00000487284 YTHDC1Q96MU7 727 aaKnown RBP19.52■□□□□ 0.71
CUX1-209ENST00000487284 SLC24A1O60721 1099 aa19.51■□□□□ 0.71
CUX1-209ENST00000487284 RBM33Q96EV2 1170 aaKnown RBP19.51■□□□□ 0.71
CUX1-209ENST00000487284 PRKRIP1Q9H875 184 aaPredicted RBP19.51■□□□□ 0.71
CUX1-209ENST00000487284 CENPBP07199 599 aaPredicted RBP19.5■□□□□ 0.71
CUX1-209ENST00000487284 PROSER2Q86WR7 435 aaPredicted RBP19.49■□□□□ 0.71
CUX1-209ENST00000487284 EVC2Q86UK5 1308 aa19.49■□□□□ 0.71
CUX1-209ENST00000487284 CDCA8Q53HL2 280 aa19.49■□□□□ 0.71
CUX1-209ENST00000487284 ADGRL3Q9HAR2 1447 aa19.47■□□□□ 0.71
CUX1-209ENST00000487284 XIRP1Q702N8 1843 aaKnown RBP19.47■□□□□ 0.71
CUX1-209ENST00000487284 CABP2Q9NPB3 220 aa19.46■□□□□ 0.71
CUX1-209ENST00000487284 TMEM94Q12767 1356 aa19.46■□□□□ 0.71
CUX1-209ENST00000487284 WASLO00401 505 aaPredicted RBP19.45■□□□□ 0.7
CUX1-209ENST00000487284 SRPK2P78362 688 aaKnown RBP19.45■□□□□ 0.7
CUX1-209ENST00000487284 CDK19Q9BWU1 502 aa19.45■□□□□ 0.7
CUX1-209ENST00000487284 LRRC7Q96NW7 1537 aa19.44■□□□□ 0.7
CUX1-209ENST00000487284 CDC42BPGQ6DT37 1551 aa19.44■□□□□ 0.7
CUX1-209ENST00000487284 KTN1Q86UP2 1357 aaKnown RBP19.43■□□□□ 0.7
CUX1-209ENST00000487284 C14orf37Q86TY3 774 aa19.43■□□□□ 0.7
CUX1-209ENST00000487284 FMN2Q9NZ56 1722 aa19.42■□□□□ 0.7
CUX1-209ENST00000487284 LTBP4Q8N2S1 1624 aa19.41■□□□□ 0.7
CUX1-209ENST00000487284 PER1O15534 1290 aaPredicted RBP19.4■□□□□ 0.7
CUX1-209ENST00000487284 ATP7BP35670 1465 aa19.4■□□□□ 0.7
CUX1-209ENST00000487284 USP32Q8NFA0 1604 aa19.4■□□□□ 0.7
CUX1-209ENST00000487284 PUS7Q96PZ0 661 aaKnown RBP19.4■□□□□ 0.7
CUX1-209ENST00000487284 NCOA3Q9Y6Q9 1424 aa19.4■□□□□ 0.7
CUX1-209ENST00000487284 ATAD2Q6PL18 1390 aa19.39■□□□□ 0.69
CUX1-209ENST00000487284 PRR36Q9H6K5 1346 aa19.39■□□□□ 0.69
CUX1-209ENST00000487284 RGPD8O14715 1765 aaPredicted RBP19.39■□□□□ 0.69
CUX1-209ENST00000487284 NUTM2FA1L443 756 aa19.38■□□□□ 0.69
CUX1-209ENST00000487284 TOPAZ1Q8N9V7 1692 aa19.37■□□□□ 0.69
CUX1-209ENST00000487284 PANK3Q9H999 370 aa19.37■□□□□ 0.69
CUX1-209ENST00000487284 NUDT16Q96DE0 195 aaKnown RBP19.36■□□□□ 0.69
CUX1-209ENST00000487284 C19orf44Q9H6X5 657 aa19.36■□□□□ 0.69
CUX1-209ENST00000487284 PARD3Q8TEW0 1356 aa19.36■□□□□ 0.69
CUX1-209ENST00000487284 ITSN1Q15811 1721 aa19.36■□□□□ 0.69
CUX1-209ENST00000487284 TMC1Q8TDI8 760 aa19.36■□□□□ 0.69
CUX1-209ENST00000487284 SLC12A5Q9H2X9 1139 aa19.35■□□□□ 0.69
CUX1-209ENST00000487284 MSH6P52701 1360 aa19.34■□□□□ 0.69
CUX1-209ENST00000487284 RALBP1Q15311 655 aa19.34■□□□□ 0.69
CUX1-209ENST00000487284 CCDC184Q52MB2 194 aa19.34■□□□□ 0.69
CUX1-209ENST00000487284 DCCP43146 1447 aa19.34■□□□□ 0.69
CUX1-209ENST00000487284 PPIP5K1Q6PFW1 1433 aa19.34■□□□□ 0.69
CUX1-209ENST00000487284 ANKARQ7Z5J8 1434 aa19.33■□□□□ 0.69
CUX1-209ENST00000487284 CCDC61Q9Y6R9 512 aa19.33■□□□□ 0.69
CUX1-209ENST00000487284 NINLQ9Y2I6 1382 aa19.32■□□□□ 0.68
CUX1-209ENST00000487284 CABP1Q9NZU7 370 aa19.32■□□□□ 0.68
CUX1-209ENST00000487284 MRS2Q9HD23 443 aa19.31■□□□□ 0.68
CUX1-209ENST00000487284 MYBBP1AQ9BQG0 1328 aaKnown RBP19.3■□□□□ 0.68
CUX1-209ENST00000487284 CD163L1Q9NR16 1453 aa19.3■□□□□ 0.68
CUX1-209ENST00000487284 NPC1L1Q9UHC9 1359 aa19.3■□□□□ 0.68
CUX1-209ENST00000487284 ATF3P18847 181 aa19.3■□□□□ 0.68
CUX1-209ENST00000487284 MST1RQ04912 1400 aa19.3■□□□□ 0.68
CUX1-209ENST00000487284 A0A1W2PP64 1363 aa19.28■□□□□ 0.68
CUX1-209ENST00000487284 ANKRD36BQ8N2N9 1353 aa19.28■□□□□ 0.68
CUX1-209ENST00000487284 CADPS2Q86UW7 1296 aa19.28■□□□□ 0.68
CUX1-209ENST00000487284 BRD4O60885 1362 aaPredicted RBP19.28■□□□□ 0.68
CUX1-209ENST00000487284 AKAP12Q02952 1782 aa19.28■□□□□ 0.68
CUX1-209ENST00000487284 C1orf167Q5SNV9 1468 aa19.27■□□□□ 0.68
CUX1-209ENST00000487284 CNGB1Q14028 1251 aaPredicted RBP19.26■□□□□ 0.67
CUX1-209ENST00000487284 KNSTRNQ9Y448 316 aa19.26■□□□□ 0.67
CUX1-209ENST00000487284 PLEKHG3A1L390 1219 aa19.25■□□□□ 0.67
CUX1-209ENST00000487284 AMER1Q5JTC6 1135 aaPredicted RBP19.25■□□□□ 0.67
CUX1-209ENST00000487284 PMFBP1Q8TBY8 1022 aa19.25■□□□□ 0.67
CUX1-209ENST00000487284 TERF2IPQ9NYB0 399 aa19.25■□□□□ 0.67
CUX1-209ENST00000487284 MON2Q7Z3U7 1717 aa19.25■□□□□ 0.67
CUX1-209ENST00000487284 CPSF1Q10570 1443 aaKnown RBP19.24■□□□□ 0.67
CUX1-209ENST00000487284 CARD14Q9BXL6 1004 aa19.24■□□□□ 0.67
CUX1-209ENST00000487284 NSD3Q9BZ95 1437 aa19.24■□□□□ 0.67
CUX1-209ENST00000487284 ESCO1Q5FWF5 840 aa19.23■□□□□ 0.67
CUX1-209ENST00000487284 HDGFL2Q7Z4V5 671 aaPredicted RBP19.23■□□□□ 0.67
CUX1-209ENST00000487284 ORAI2Q96SN7 254 aa19.23■□□□□ 0.67
CUX1-209ENST00000487284 ACEP12821 1306 aa19.23■□□□□ 0.67
CUX1-209ENST00000487284 CC2D1BQ5T0F9 858 aaKnown RBP19.23■□□□□ 0.67
CUX1-209ENST00000487284 PHF8Q9UPP1 1060 aa19.23■□□□□ 0.67
CUX1-209ENST00000487284 KIF1AQ12756 1690 aa19.22■□□□□ 0.67
CUX1-209ENST00000487284 NLRP13Q86W25 1043 aa19.22■□□□□ 0.67
CUX1-209ENST00000487284 POLR3AO14802 1390 aaPredicted RBP19.22■□□□□ 0.67
CUX1-209ENST00000487284 ANKRD26Q9UPS8 1709 aa19.21■□□□□ 0.67
CUX1-209ENST00000487284 NGDNQ8NEJ9 315 aaKnown RBP19.21■□□□□ 0.67
CUX1-209ENST00000487284 NRKQ7Z2Y5 1582 aa19.2■□□□□ 0.66
CUX1-209ENST00000487284 SLAIN2Q9P270 581 aa19.19■□□□□ 0.66
CUX1-209ENST00000487284 USP6P35125 1406 aa19.18■□□□□ 0.66
CUX1-209ENST00000487284 ZNF692Q9BU19 519 aaPredicted RBP19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms