RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 NCLP19338 710 aaKnown RBP16.67■□□□□ 0.26
HMGN1-216ENST00000486741 CARD14Q9BXL6 1004 aa16.67■□□□□ 0.26
HMGN1-216ENST00000486741 GCC2Q8IWJ2 1684 aa16.67■□□□□ 0.26
HMGN1-216ENST00000486741 SPATA31E1Q6ZUB1 1445 aa16.67■□□□□ 0.26
HMGN1-216ENST00000486741 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.67■□□□□ 0.26
HMGN1-216ENST00000486741 NLRP6P59044 892 aa16.66■□□□□ 0.26
HMGN1-216ENST00000486741 DUSP27Q5VZP5 1158 aa16.66■□□□□ 0.26
HMGN1-216ENST00000486741 CASC1Q6TDU7 716 aa16.66■□□□□ 0.26
HMGN1-216ENST00000486741 ABCA8O94911 1581 aa16.66■□□□□ 0.26
HMGN1-216ENST00000486741 HSCBQ8IWL3 235 aa16.65■□□□□ 0.26
HMGN1-216ENST00000486741 RBM33Q96EV2 1170 aaKnown RBP16.65■□□□□ 0.26
HMGN1-216ENST00000486741 LNPKQ9C0E8 428 aa16.65■□□□□ 0.26
HMGN1-216ENST00000486741 FOXD4L1Q9NU39 408 aa16.65■□□□□ 0.26
HMGN1-216ENST00000486741 PARD3Q8TEW0 1356 aa16.65■□□□□ 0.26
HMGN1-216ENST00000486741 ERCC6L2Q5T890 1561 aa16.64■□□□□ 0.26
HMGN1-216ENST00000486741 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.64■□□□□ 0.251e-6■■■■□ 20.1
HMGN1-216ENST00000486741 RTEL1-TNFRSF6BF6WH68 1400 aa16.64■□□□□ 0.25
HMGN1-216ENST00000486741 CFAP65Q6ZU64 1925 aaKnown RBP16.63■□□□□ 0.25
HMGN1-216ENST00000486741 NME9Q86XW9 330 aa16.63■□□□□ 0.25
HMGN1-216ENST00000486741 DDX19BQ9UMR2 479 aa16.63■□□□□ 0.25
HMGN1-216ENST00000486741 MSH5O43196 834 aa16.63■□□□□ 0.25
HMGN1-216ENST00000486741 SULT6B1Q6IMI4 303 aa16.63■□□□□ 0.25
HMGN1-216ENST00000486741 C1orf115Q9H7X2 142 aa16.63■□□□□ 0.25
HMGN1-216ENST00000486741 NUDT16Q96DE0 195 aaKnown RBP16.62■□□□□ 0.25
HMGN1-216ENST00000486741 UHRF1BP1Q6BDS2 1440 aa16.62■□□□□ 0.25
HMGN1-216ENST00000486741 EIF2S2P20042 333 aaKnown RBP16.62■□□□□ 0.25
HMGN1-216ENST00000486741 EMILIN1Q9Y6C2 1016 aa16.62■□□□□ 0.25
HMGN1-216ENST00000486741 PRKCSHP14314 528 aaPredicted RBP16.61■□□□□ 0.25
HMGN1-216ENST00000486741 GZF1Q9H116 711 aaPredicted RBP16.61■□□□□ 0.25
HMGN1-216ENST00000486741 NOB1Q9ULX3 412 aaKnown RBP16.61■□□□□ 0.25
HMGN1-216ENST00000486741 TMPOP42166 694 aaKnown RBP16.61■□□□□ 0.25
HMGN1-216ENST00000486741 PSME1Q06323 249 aa16.61■□□□□ 0.25
HMGN1-216ENST00000486741 ZNF330Q9Y3S2 320 aaPredicted RBP16.6■□□□□ 0.25
HMGN1-216ENST00000486741 GNAI1P63096 354 aa16.6■□□□□ 0.25
HMGN1-216ENST00000486741 DCTN1Q14203 1278 aa16.6■□□□□ 0.25
HMGN1-216ENST00000486741 ARHGEF12Q9NZN5 1544 aa16.6■□□□□ 0.25
HMGN1-216ENST00000486741 ANP32BQ92688 251 aaKnown RBP16.59■□□□□ 0.25
HMGN1-216ENST00000486741 CCDC61Q9Y6R9 512 aa16.59■□□□□ 0.25
HMGN1-216ENST00000486741 ZNF518AQ6AHZ1 1483 aa16.59■□□□□ 0.25
HMGN1-216ENST00000486741 BACH2Q9BYV9 841 aa16.59■□□□□ 0.25
HMGN1-216ENST00000486741 ATAD2Q6PL18 1390 aa16.59■□□□□ 0.25
HMGN1-216ENST00000486741 PDE3AQ14432 1141 aa16.58■□□□□ 0.25
HMGN1-216ENST00000486741 SAMD9LQ8IVG5 1584 aa16.58■□□□□ 0.24
HMGN1-216ENST00000486741 ABTB2Q8N961 1025 aa16.58■□□□□ 0.24
HMGN1-216ENST00000486741 PDZRN3Q9UPQ7 1066 aa16.58■□□□□ 0.24
HMGN1-216ENST00000486741 WDR63Q8IWG1 891 aa16.57■□□□□ 0.24
HMGN1-216ENST00000486741 SPINK5Q9NQ38 1064 aaPredicted RBP16.57■□□□□ 0.24
HMGN1-216ENST00000486741 TSPYL4Q9UJ04 414 aa16.57■□□□□ 0.24
HMGN1-216ENST00000486741 LRRIQ1Q96JM4 1722 aa16.56■□□□□ 0.24
HMGN1-216ENST00000486741 TTC37Q6PGP7 1564 aa16.56■□□□□ 0.24
HMGN1-216ENST00000486741 KIF16BQ96L93 1317 aa16.55■□□□□ 0.24
HMGN1-216ENST00000486741 TRIM6-TRIM34B2RNG4 842 aa16.55■□□□□ 0.24
HMGN1-216ENST00000486741 RARSP54136 660 aaKnown RBP16.55■□□□□ 0.24
HMGN1-216ENST00000486741 PLEKHH1Q9ULM0 1364 aa16.55■□□□□ 0.24
HMGN1-216ENST00000486741 TWISTNBQ3B726 338 aaPredicted RBP16.55■□□□□ 0.24
HMGN1-216ENST00000486741 TAOK2Q9UL54 1235 aa16.55■□□□□ 0.24
HMGN1-216ENST00000486741 GOLGA6L22H0YM25 854 aa16.54■□□□□ 0.24
HMGN1-216ENST00000486741 NCKAP5LQ9HCH0 1330 aa16.54■□□□□ 0.24
HMGN1-216ENST00000486741 FYB1O15117 783 aa16.54■□□□□ 0.24
HMGN1-216ENST00000486741 XPCQ01831 940 aaPredicted RBP16.54■□□□□ 0.24
HMGN1-216ENST00000486741 NOL8Q76FK4 1167 aaKnown RBP16.54■□□□□ 0.24
HMGN1-216ENST00000486741 MIS18AQ9NYP9 233 aa16.54■□□□□ 0.24
HMGN1-216ENST00000486741 ZRANB1Q9UGI0 708 aa16.54■□□□□ 0.24
HMGN1-216ENST00000486741 FKBP5Q13451 457 aaPredicted RBP16.54■□□□□ 0.24
HMGN1-216ENST00000486741 KCNJ4P48050 445 aa16.53■□□□□ 0.24
HMGN1-216ENST00000486741 ESCO1Q5FWF5 840 aa16.53■□□□□ 0.24
HMGN1-216ENST00000486741 TEFQ10587 303 aa16.53■□□□□ 0.24
HMGN1-216ENST00000486741 SSH1Q8WYL5 1049 aa16.53■□□□□ 0.24
HMGN1-216ENST00000486741 ZNF428Q96B54 188 aa16.53■□□□□ 0.24
HMGN1-216ENST00000486741 COL17A1Q9UMD9 1497 aaPredicted RBP16.53■□□□□ 0.24
HMGN1-216ENST00000486741 WASLO00401 505 aaPredicted RBP16.52■□□□□ 0.24
HMGN1-216ENST00000486741 ATF7IPQ6VMQ6 1270 aa16.52■□□□□ 0.24
HMGN1-216ENST00000486741 THEMISQ8N1K5 641 aaPredicted RBP16.52■□□□□ 0.24
HMGN1-216ENST00000486741 HMMRO75330 724 aa16.52■□□□□ 0.23
HMGN1-216ENST00000486741 API5Q9BZZ5 524 aaKnown RBP16.52■□□□□ 0.23
HMGN1-216ENST00000486741 TNNQ9UQP3 1299 aa16.51■□□□□ 0.23
HMGN1-216ENST00000486741 ATP7AQ04656 1500 aa16.51■□□□□ 0.23
HMGN1-216ENST00000486741 DMRT2Q9Y5R5 561 aa16.51■□□□□ 0.23
HMGN1-216ENST00000486741 PLA2R1Q13018 1463 aa16.51■□□□□ 0.23
HMGN1-216ENST00000486741 FCHSD2O94868 740 aa16.5■□□□□ 0.23
HMGN1-216ENST00000486741 ZNF692Q9BU19 519 aaPredicted RBP16.5■□□□□ 0.23
HMGN1-216ENST00000486741 ADGBQ8N7X0 1667 aa16.5■□□□□ 0.23
HMGN1-216ENST00000486741 CHD1O14646 1710 aa16.5■□□□□ 0.23
HMGN1-216ENST00000486741 ASXL1Q8IXJ9 1541 aa16.5■□□□□ 0.23
HMGN1-216ENST00000486741 MVPQ14764 893 aaKnown RBP16.5■□□□□ 0.23
HMGN1-216ENST00000486741 MCM10Q7L590 875 aa16.5■□□□□ 0.23
HMGN1-216ENST00000486741 TMEM57Q8N5G2 664 aa16.49■□□□□ 0.23
HMGN1-216ENST00000486741 ARHGEF5Q12774 1597 aa16.49■□□□□ 0.23
HMGN1-216ENST00000486741 MAST1Q9Y2H9 1570 aa16.48■□□□□ 0.23
HMGN1-216ENST00000486741 RILPL2Q969X0 211 aa16.48■□□□□ 0.23
HMGN1-216ENST00000486741 AMOTL2Q9Y2J4 779 aa16.48■□□□□ 0.23
HMGN1-216ENST00000486741 FAM83GA6ND36 823 aa16.48■□□□□ 0.23
HMGN1-216ENST00000486741 LRPPRCP42704 1394 aaKnown RBP16.48■□□□□ 0.23
HMGN1-216ENST00000486741 GPRASP1Q5JY77 1395 aa16.48■□□□□ 0.23
HMGN1-216ENST00000486741 NKTRP30414 1462 aaKnown RBP16.48■□□□□ 0.23
HMGN1-216ENST00000486741 IGHDP01880 384 aa16.47■□□□□ 0.23
HMGN1-216ENST00000486741 NFE2L2Q16236 605 aa16.47■□□□□ 0.23
HMGN1-216ENST00000486741 C1orf141Q5JVX7 400 aa16.47■□□□□ 0.23
HMGN1-216ENST00000486741 UGGT1Q9NYU2 1555 aa16.47■□□□□ 0.23
HMGN1-216ENST00000486741 SLC4A2P04920 1241 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms