RNA–Protein interactions for RNA: ENST00000486159.5

TMEM39A-208, Transcript of transmembrane protein 39A, human

TSL 3

Gene TMEM39A, Length 826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM39A-208	ENST00000486159	TMEM132E	Q6IEE7	984 aa		13.93	□□□□□ -0.18
TMEM39A-208	ENST00000486159	WAPL	Q7Z5K2	1190 aa		13.93	□□□□□ -0.18
TMEM39A-208	ENST00000486159	STK26	Q9P289	416 aa		13.93	□□□□□ -0.18
TMEM39A-208	ENST00000486159	PNPLA6	Q8IY17	1366 aa		13.93	□□□□□ -0.18
TMEM39A-208	ENST00000486159	AFF2	P51816	1311 aa		13.92	□□□□□ -0.18
TMEM39A-208	ENST00000486159	HRC	P23327	699 aa		13.92	□□□□□ -0.18
TMEM39A-208	ENST00000486159	PTCH1	Q13635	1447 aa		13.91	□□□□□ -0.18
TMEM39A-208	ENST00000486159	SPATA31E1	Q6ZUB1	1445 aa		13.91	□□□□□ -0.18
TMEM39A-208	ENST00000486159	NUTM2F	A1L443	756 aa		13.91	□□□□□ -0.18
TMEM39A-208	ENST00000486159	LRRC59	Q96AG4	307 aa	Known RBP	13.91	□□□□□ -0.18
TMEM39A-208	ENST00000486159	C8orf37	Q96NL8	207 aa		13.91	□□□□□ -0.18
TMEM39A-208	ENST00000486159	PLEKHH1	Q9ULM0	1364 aa		13.91	□□□□□ -0.18
TMEM39A-208	ENST00000486159	ADAMTS2	O95450	1211 aa		13.9	□□□□□ -0.18
TMEM39A-208	ENST00000486159	ZNF772	Q68DY9	489 aa	Predicted RBP	13.9	□□□□□ -0.18
TMEM39A-208	ENST00000486159	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
TMEM39A-208	ENST00000486159	IFT172	Q9UG01	1749 aa		13.9	□□□□□ -0.18
TMEM39A-208	ENST00000486159	XPC	Q01831	940 aa	Predicted RBP	13.89	□□□□□ -0.19
TMEM39A-208	ENST00000486159	IFFO2	Q5TF58	517 aa		13.89	□□□□□ -0.19
TMEM39A-208	ENST00000486159	CCDC144A	A2RUR9	1427 aa		13.89	□□□□□ -0.19
TMEM39A-208	ENST00000486159	RXRB	P28702	533 aa		13.88	□□□□□ -0.19
TMEM39A-208	ENST00000486159	SOS2	Q07890	1332 aa	Predicted RBP	13.88	□□□□□ -0.19
TMEM39A-208	ENST00000486159	PRAG1	Q86YV5	1406 aa		13.87	□□□□□ -0.19
TMEM39A-208	ENST00000486159	ESCO1	Q5FWF5	840 aa		13.86	□□□□□ -0.19
TMEM39A-208	ENST00000486159	QTRT2	Q9H974	415 aa	Known RBP	13.86	□□□□□ -0.19
TMEM39A-208	ENST00000486159	LAMC1	P11047	1609 aa		13.86	□□□□□ -0.19
TMEM39A-208	ENST00000486159	ZEB1	P37275	1124 aa	Predicted RBP	13.85	□□□□□ -0.19
TMEM39A-208	ENST00000486159	FOXO3	O43524	673 aa		13.84	□□□□□ -0.19
TMEM39A-208	ENST00000486159	CFAP70	Q5T0N1	1121 aa		13.84	□□□□□ -0.19
TMEM39A-208	ENST00000486159	LRPPRC	P42704	1394 aa	Known RBP	13.83	□□□□□ -0.19
TMEM39A-208	ENST00000486159	PIK3C2G	O75747	1445 aa		13.83	□□□□□ -0.2
TMEM39A-208	ENST00000486159	NGLY1	Q96IV0	654 aa		13.83	□□□□□ -0.2
TMEM39A-208	ENST00000486159	ANKRD30B	Q9BXX2	1392 aa		13.82	□□□□□ -0.2
TMEM39A-208	ENST00000486159	RAB3GAP2	Q9H2M9	1393 aa		13.82	□□□□□ -0.2
TMEM39A-208	ENST00000486159	RGS12	O14924	1447 aa		13.81	□□□□□ -0.2
TMEM39A-208	ENST00000486159	TECPR2	O15040	1411 aa		13.81	□□□□□ -0.2
TMEM39A-208	ENST00000486159	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.81	□□□□□ -0.2
TMEM39A-208	ENST00000486159	PXDN	Q92626	1479 aa		13.81	□□□□□ -0.2
TMEM39A-208	ENST00000486159	CDC42BPG	Q6DT37	1551 aa		13.81	□□□□□ -0.2
TMEM39A-208	ENST00000486159	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
TMEM39A-208	ENST00000486159	ABCC11	Q96J66	1382 aa		13.81	□□□□□ -0.2
TMEM39A-208	ENST00000486159	RGPD8	O14715	1765 aa	Predicted RBP	13.81	□□□□□ -0.2
TMEM39A-208	ENST00000486159	C14orf93	Q9H972	538 aa	Known RBP	13.8	□□□□□ -0.2
TMEM39A-208	ENST00000486159	KNDC1	Q76NI1	1749 aa		13.8	□□□□□ -0.2
TMEM39A-208	ENST00000486159	PLEKHG5	O94827	1062 aa		13.79	□□□□□ -0.2
TMEM39A-208	ENST00000486159	RBM6	P78332	1123 aa	Known RBP	13.79	□□□□□ -0.2
TMEM39A-208	ENST00000486159	USP21	Q9UK80	565 aa		13.79	□□□□□ -0.2
TMEM39A-208	ENST00000486159	FMN2	Q9NZ56	1722 aa		13.78	□□□□□ -0.2
TMEM39A-208	ENST00000486159	NPHP3	Q7Z494	1330 aa		13.78	□□□□□ -0.2
TMEM39A-208	ENST00000486159	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.78	□□□□□ -0.2
TMEM39A-208	ENST00000486159	SLC4A2	P04920	1241 aa		13.77	□□□□□ -0.21
TMEM39A-208	ENST00000486159	MYOM2	P54296	1465 aa		13.77	□□□□□ -0.21
TMEM39A-208	ENST00000486159	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.77	□□□□□ -0.21
TMEM39A-208	ENST00000486159	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.77	□□□□□ -0.21
TMEM39A-208	ENST00000486159	NRXN1	Q9ULB1	1477 aa		13.77	□□□□□ -0.21
TMEM39A-208	ENST00000486159	KDM2A	Q9Y2K7	1162 aa		13.77	□□□□□ -0.21
TMEM39A-208	ENST00000486159	PRAM1	Q96QH2	718 aa		13.76	□□□□□ -0.21
TMEM39A-208	ENST00000486159	KRT28	Q7Z3Y7	464 aa		13.75	□□□□□ -0.21
TMEM39A-208	ENST00000486159	BCL9L	Q86UU0	1499 aa		13.74	□□□□□ -0.21
TMEM39A-208	ENST00000486159	CABLES1	Q8TDN4	633 aa		13.74	□□□□□ -0.21
TMEM39A-208	ENST00000486159	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.74	□□□□□ -0.21
TMEM39A-208	ENST00000486159	FOXD4L1	Q9NU39	408 aa		13.74	□□□□□ -0.21
TMEM39A-208	ENST00000486159	ATRN	O75882	1429 aa		13.73	□□□□□ -0.21
TMEM39A-208	ENST00000486159	MARF1	Q9Y4F3	1742 aa	Known RBP	13.73	□□□□□ -0.21
TMEM39A-208	ENST00000486159	DHX57	Q6P158	1386 aa	Known RBP	13.73	□□□□□ -0.21
TMEM39A-208	ENST00000486159	SPATA31A3	Q5VYP0	1347 aa		13.73	□□□□□ -0.21
TMEM39A-208	ENST00000486159	PMFBP1	Q8TBY8	1022 aa		13.73	□□□□□ -0.21
TMEM39A-208	ENST00000486159	SIRT1	Q96EB6	747 aa		13.73	□□□□□ -0.21
TMEM39A-208	ENST00000486159	TRPC5	Q9UL62	973 aa	Predicted RBP	13.73	□□□□□ -0.21
TMEM39A-208	ENST00000486159	TRAK1	Q9UPV9	953 aa		13.73	□□□□□ -0.21
TMEM39A-208	ENST00000486159	PHF8	Q9UPP1	1060 aa		13.72	□□□□□ -0.21
TMEM39A-208	ENST00000486159	USP32	Q8NFA0	1604 aa		13.72	□□□□□ -0.21
TMEM39A-208	ENST00000486159	DCAF11	Q8TEB1	546 aa		13.71	□□□□□ -0.21
TMEM39A-208	ENST00000486159	ADGRB1	O14514	1584 aa		13.71	□□□□□ -0.22
TMEM39A-208	ENST00000486159	POGK	Q9P215	609 aa		13.7	□□□□□ -0.22
TMEM39A-208	ENST00000486159	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.69	□□□□□ -0.22
TMEM39A-208	ENST00000486159	PRR36	Q9H6K5	1346 aa		13.69	□□□□□ -0.22
TMEM39A-208	ENST00000486159	ZBTB22	O15209	634 aa		13.69	□□□□□ -0.22
TMEM39A-208	ENST00000486159	KIF1A	Q12756	1690 aa		13.69	□□□□□ -0.22
TMEM39A-208	ENST00000486159	LMOD2	Q6P5Q4	547 aa		13.68	□□□□□ -0.22
TMEM39A-208	ENST00000486159	GJD4	Q96KN9	370 aa	Predicted RBP	13.68	□□□□□ -0.22
TMEM39A-208	ENST00000486159	GLI3	P10071	1580 aa		13.66	□□□□□ -0.22
TMEM39A-208	ENST00000486159	SLIT2	O94813	1529 aa		13.66	□□□□□ -0.22
TMEM39A-208	ENST00000486159	DLC1	Q96QB1	1528 aa		13.66	□□□□□ -0.22
TMEM39A-208	ENST00000486159	PSME1	Q06323	249 aa		13.66	□□□□□ -0.22
TMEM39A-208	ENST00000486159	TNS3	Q68CZ2	1445 aa		13.65	□□□□□ -0.22
TMEM39A-208	ENST00000486159	UNC5CL	Q8IV45	518 aa		13.65	□□□□□ -0.22
TMEM39A-208	ENST00000486159	RALGAPB	Q86X10	1494 aa		13.65	□□□□□ -0.22
TMEM39A-208	ENST00000486159	FAM83G	A6ND36	823 aa		13.64	□□□□□ -0.23
TMEM39A-208	ENST00000486159	BRWD3	Q6RI45	1802 aa		13.64	□□□□□ -0.23
TMEM39A-208	ENST00000486159	ABCA3	Q99758	1704 aa		13.64	□□□□□ -0.23
TMEM39A-208	ENST00000486159	ATAD2	Q6PL18	1390 aa		13.63	□□□□□ -0.23
TMEM39A-208	ENST00000486159	HAP1	P54257	671 aa	Predicted RBP	13.63	□□□□□ -0.23
TMEM39A-208	ENST00000486159	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.63	□□□□□ -0.23
TMEM39A-208	ENST00000486159	ACIN1	Q9UKV3	1341 aa	Known RBP	13.63	□□□□□ -0.23
TMEM39A-208	ENST00000486159	ADGRB2	O60241	1585 aa		13.62	□□□□□ -0.23
TMEM39A-208	ENST00000486159	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.62	□□□□□ -0.23
TMEM39A-208	ENST00000486159	SBNO1	A3KN83	1393 aa		13.62	□□□□□ -0.23
TMEM39A-208	ENST00000486159	EP400	Q96L91	3159 aa		13.62	□□□□□ -0.23
TMEM39A-208	ENST00000486159	WASL	O00401	505 aa	Predicted RBP	13.62	□□□□□ -0.23
TMEM39A-208	ENST00000486159	CCER1	Q8TC90	406 aa	Predicted RBP	13.62	□□□□□ -0.23

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