RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 NUTM2BA6NNL0 878 aaPredicted RBP11.75□□□□□ -0.53
SF3A1-208ENST00000485618 NUTM2EB1AL46 878 aaPredicted RBP11.75□□□□□ -0.53
SF3A1-208ENST00000485618 NUTM2AQ8IVF1 878 aaPredicted RBP11.75□□□□□ -0.53
SF3A1-208ENST00000485618 POGKQ9P215 609 aa11.75□□□□□ -0.53
SF3A1-208ENST00000485618 LAMC1P11047 1609 aa11.75□□□□□ -0.53
SF3A1-208ENST00000485618 IFT172Q9UG01 1749 aa11.74□□□□□ -0.53
SF3A1-208ENST00000485618 TMEM132EQ6IEE7 984 aa11.74□□□□□ -0.53
SF3A1-208ENST00000485618 LRPPRCP42704 1394 aaKnown RBP11.74□□□□□ -0.53
SF3A1-208ENST00000485618 ABCC11Q96J66 1382 aa11.74□□□□□ -0.53
SF3A1-208ENST00000485618 MST1RQ04912 1400 aa11.74□□□□□ -0.53
SF3A1-208ENST00000485618 NHSL1Q5SYE7 1610 aa11.74□□□□□ -0.53
SF3A1-208ENST00000485618 PRAG1Q86YV5 1406 aa11.73□□□□□ -0.53
SF3A1-208ENST00000485618 NALCNQ8IZF0 1738 aa11.73□□□□□ -0.53
SF3A1-208ENST00000485618 ADGRL3Q9HAR2 1447 aa11.72□□□□□ -0.53
SF3A1-208ENST00000485618 SLC24A1O60721 1099 aa11.72□□□□□ -0.53
SF3A1-208ENST00000485618 YTHDC2Q9H6S0 1430 aaKnown RBP11.71□□□□□ -0.53
SF3A1-208ENST00000485618 ROCK2O75116 1388 aaKnown RBP11.71□□□□□ -0.53
SF3A1-208ENST00000485618 RXRBP28702 533 aa11.71□□□□□ -0.53
SF3A1-208ENST00000485618 TRAK1Q9UPV9 953 aa11.71□□□□□ -0.53
SF3A1-208ENST00000485618 CDK12Q9NYV4 1490 aaPredicted RBP11.7□□□□□ -0.54
SF3A1-208ENST00000485618 AFF2P51816 1311 aa11.7□□□□□ -0.54
SF3A1-208ENST00000485618 UPF1Q92900 1129 aaKnown RBP eCLIP11.7□□□□□ -0.54
SF3A1-208ENST00000485618 PTCH1Q13635 1447 aa11.69□□□□□ -0.54
SF3A1-208ENST00000485618 EIF3AQ14152 1382 aaKnown RBP11.69□□□□□ -0.54
SF3A1-208ENST00000485618 CARD11Q9BXL7 1154 aa11.69□□□□□ -0.54
SF3A1-208ENST00000485618 KIAA1210Q9ULL0 1709 aa11.69□□□□□ -0.54
SF3A1-208ENST00000485618 PNPLA6Q8IY17 1366 aa11.68□□□□□ -0.54
SF3A1-208ENST00000485618 SRCAPQ6ZRS2 3230 aa11.68□□□□□ -0.54
SF3A1-208ENST00000485618 PRAM1Q96QH2 718 aa11.68□□□□□ -0.54
SF3A1-208ENST00000485618 RGS12O14924 1447 aa11.68□□□□□ -0.54
SF3A1-208ENST00000485618 TECPR2O15040 1411 aa11.68□□□□□ -0.54
SF3A1-208ENST00000485618 NBPF1Q3BBV0 1214 aa11.67□□□□□ -0.54
SF3A1-208ENST00000485618 DDX17Q92841 729 aaKnown RBP11.67□□□□□ -0.54
SF3A1-208ENST00000485618 LRRC59Q96AG4 307 aaKnown RBP11.67□□□□□ -0.54
SF3A1-208ENST00000485618 C8orf37Q96NL8 207 aa11.67□□□□□ -0.54
SF3A1-208ENST00000485618 ROBO2Q9HCK4 1378 aa11.67□□□□□ -0.54
SF3A1-208ENST00000485618 NBPF8Q3BBV2 869 aa11.66□□□□□ -0.54
SF3A1-208ENST00000485618 WAPLQ7Z5K2 1190 aa11.66□□□□□ -0.54
SF3A1-208ENST00000485618 C1orf167Q5SNV9 1468 aa11.65□□□□□ -0.54
SF3A1-208ENST00000485618 ZEB1P37275 1124 aaPredicted RBP11.65□□□□□ -0.54
SF3A1-208ENST00000485618 CENPJQ9HC77 1338 aaPredicted RBP11.64□□□□□ -0.55
SF3A1-208ENST00000485618 DLC1Q96QB1 1528 aa11.64□□□□□ -0.55
SF3A1-208ENST00000485618 ADGRB1O14514 1584 aa11.63□□□□□ -0.55
SF3A1-208ENST00000485618 ADAMTS2O95450 1211 aa11.63□□□□□ -0.55
SF3A1-208ENST00000485618 SAFB2Q14151 953 aaKnown RBP eCLIP11.63□□□□□ -0.55
SF3A1-208ENST00000485618 GPRASP1Q5JY77 1395 aa11.63□□□□□ -0.55
SF3A1-208ENST00000485618 RALGAPBQ86X10 1494 aa11.63□□□□□ -0.55
SF3A1-208ENST00000485618 RBM6P78332 1123 aaKnown RBP11.62□□□□□ -0.55
SF3A1-208ENST00000485618 QTRT2Q9H974 415 aaKnown RBP11.62□□□□□ -0.55
SF3A1-208ENST00000485618 KNDC1Q76NI1 1749 aa11.61□□□□□ -0.55
SF3A1-208ENST00000485618 NGLY1Q96IV0 654 aa11.61□□□□□ -0.55
SF3A1-208ENST00000485618 TRPM1Q7Z4N2 1603 aa11.6□□□□□ -0.55
SF3A1-208ENST00000485618 CDC42BPGQ6DT37 1551 aa11.6□□□□□ -0.55
SF3A1-208ENST00000485618 CDCA8Q53HL2 280 aa11.6□□□□□ -0.55
SF3A1-208ENST00000485618 ORAI2Q96SN7 254 aa11.6□□□□□ -0.55
SF3A1-208ENST00000485618 EVC2Q86UK5 1308 aa11.6□□□□□ -0.55
SF3A1-208ENST00000485618 MINK1Q8N4C8 1332 aaPredicted RBP11.6□□□□□ -0.55
SF3A1-208ENST00000485618 WASLO00401 505 aaPredicted RBP11.59□□□□□ -0.55
SF3A1-208ENST00000485618 COL22A1Q8NFW1 1626 aaPredicted RBP11.59□□□□□ -0.55
SF3A1-208ENST00000485618 SOS2Q07890 1332 aaPredicted RBP11.59□□□□□ -0.55
SF3A1-208ENST00000485618 ATAD2Q6PL18 1390 aa11.58□□□□□ -0.56
SF3A1-208ENST00000485618 EIF4G2P78344 907 aaKnown RBP eCLIP11.58□□□□□ -0.56
SF3A1-208ENST00000485618 ESCO1Q5FWF5 840 aa11.58□□□□□ -0.56
SF3A1-208ENST00000485618 HIRIP3Q9BW71 556 aaPredicted RBP11.58□□□□□ -0.56
SF3A1-208ENST00000485618 PLEKHH1Q9ULM0 1364 aa11.57□□□□□ -0.56
SF3A1-208ENST00000485618 SRPK2P78362 688 aaKnown RBP11.57□□□□□ -0.56
SF3A1-208ENST00000485618 CDK19Q9BWU1 502 aa11.57□□□□□ -0.56
SF3A1-208ENST00000485618 USP21Q9UK80 565 aa11.57□□□□□ -0.56
SF3A1-208ENST00000485618 ST20-MTHFSA0A0A6YYL1 179 aa11.56□□□□□ -0.56
SF3A1-208ENST00000485618 TMF1P82094 1093 aa11.56□□□□□ -0.56
SF3A1-208ENST00000485618 TRPC5Q9UL62 973 aaPredicted RBP11.56□□□□□ -0.56
SF3A1-208ENST00000485618 USP47Q96K76 1375 aa11.55□□□□□ -0.56
SF3A1-208ENST00000485618 ATRNO75882 1429 aa11.55□□□□□ -0.56
SF3A1-208ENST00000485618 PUS7Q96PZ0 661 aaKnown RBP11.55□□□□□ -0.56
SF3A1-208ENST00000485618 CCDC61Q9Y6R9 512 aa11.55□□□□□ -0.56
SF3A1-208ENST00000485618 PXDNQ92626 1479 aa11.55□□□□□ -0.56
SF3A1-208ENST00000485618 NPHP3Q7Z494 1330 aa11.55□□□□□ -0.56
SF3A1-208ENST00000485618 SBNO2Q9Y2G9 1366 aa11.54□□□□□ -0.56
SF3A1-208ENST00000485618 ANKARQ7Z5J8 1434 aa11.54□□□□□ -0.56
SF3A1-208ENST00000485618 PSME1Q06323 249 aa11.54□□□□□ -0.56
SF3A1-208ENST00000485618 NUDT16Q96DE0 195 aaKnown RBP11.54□□□□□ -0.56
SF3A1-208ENST00000485618 MARF1Q9Y4F3 1742 aaKnown RBP11.53□□□□□ -0.56
SF3A1-208ENST00000485618 NUTM2FA1L443 756 aa11.53□□□□□ -0.56
SF3A1-208ENST00000485618 XPCQ01831 940 aaPredicted RBP11.53□□□□□ -0.56
SF3A1-208ENST00000485618 FNBP4Q8N3X1 1017 aaPredicted RBP11.53□□□□□ -0.56
SF3A1-208ENST00000485618 PHF8Q9UPP1 1060 aa11.53□□□□□ -0.56
SF3A1-208ENST00000485618 ARHGEF28Q8N1W1 1705 aaKnown RBP11.52□□□□□ -0.56
SF3A1-208ENST00000485618 NGDNQ8NEJ9 315 aaKnown RBP11.52□□□□□ -0.57
SF3A1-208ENST00000485618 KIF1AQ12756 1690 aa11.51□□□□□ -0.57
SF3A1-208ENST00000485618 FMN2Q9NZ56 1722 aa11.51□□□□□ -0.57
SF3A1-208ENST00000485618 ADGRB2O60241 1585 aa11.5□□□□□ -0.57
SF3A1-208ENST00000485618 FOXO3O43524 673 aa11.5□□□□□ -0.57
SF3A1-208ENST00000485618 ZNF692Q9BU19 519 aaPredicted RBP11.5□□□□□ -0.57
SF3A1-208ENST00000485618 CABP2Q9NPB3 220 aa11.5□□□□□ -0.57
SF3A1-208ENST00000485618 BCL9LQ86UU0 1499 aa11.5□□□□□ -0.57
SF3A1-208ENST00000485618 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.49□□□□□ -0.57
SF3A1-208ENST00000485618 PLEKHG3A1L390 1219 aa11.49□□□□□ -0.57
SF3A1-208ENST00000485618 TULP4Q9NRJ4 1543 aa11.49□□□□□ -0.57
SF3A1-208ENST00000485618 USP32Q8NFA0 1604 aa11.49□□□□□ -0.57
SF3A1-208ENST00000485618 QRICH2Q9H0J4 1663 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms