RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 PRAG1Q86YV5 1406 aa20.87■□□□□ 0.93
SQSTM1-208ENST00000485412 COL22A1Q8NFW1 1626 aaPredicted RBP20.86■□□□□ 0.93
SQSTM1-208ENST00000485412 RPGRIP1LQ68CZ1 1315 aa20.82■□□□□ 0.92
SQSTM1-208ENST00000485412 ADGRF5Q8IZF2 1346 aa20.82■□□□□ 0.92
SQSTM1-208ENST00000485412 MARF1Q9Y4F3 1742 aaKnown RBP20.82■□□□□ 0.92
SQSTM1-208ENST00000485412 FNBP4Q8N3X1 1017 aaPredicted RBP20.82■□□□□ 0.92
SQSTM1-208ENST00000485412 ATRNO75882 1429 aa20.81■□□□□ 0.92
SQSTM1-208ENST00000485412 SPATA31E1Q6ZUB1 1445 aa20.81■□□□□ 0.92
SQSTM1-208ENST00000485412 CDC42BPGQ6DT37 1551 aa20.8■□□□□ 0.92
SQSTM1-208ENST00000485412 NPHP3Q7Z494 1330 aa20.79■□□□□ 0.92
SQSTM1-208ENST00000485412 ESCO1Q5FWF5 840 aa20.79■□□□□ 0.92
SQSTM1-208ENST00000485412 MYOM2P54296 1465 aa20.78■□□□□ 0.92
SQSTM1-208ENST00000485412 RGL3Q3MIN7 710 aa20.78■□□□□ 0.92
SQSTM1-208ENST00000485412 KNDC1Q76NI1 1749 aa20.78■□□□□ 0.92
SQSTM1-208ENST00000485412 CCDC144AA2RUR9 1427 aa20.78■□□□□ 0.92
SQSTM1-208ENST00000485412 ZRANB1Q9UGI0 708 aa20.77■□□□□ 0.92
SQSTM1-208ENST00000485412 PXDNQ92626 1479 aa20.75■□□□□ 0.91
SQSTM1-208ENST00000485412 PLEKHH1Q9ULM0 1364 aa20.75■□□□□ 0.91
SQSTM1-208ENST00000485412 XPCQ01831 940 aaPredicted RBP20.74■□□□□ 0.91
SQSTM1-208ENST00000485412 WAPLQ7Z5K2 1190 aa20.74■□□□□ 0.91
SQSTM1-208ENST00000485412 MPHOSPH9Q99550 1183 aa20.74■□□□□ 0.91
SQSTM1-208ENST00000485412 STK26Q9P289 416 aa20.74■□□□□ 0.91
SQSTM1-208ENST00000485412 LRPPRCP42704 1394 aaKnown RBP20.73■□□□□ 0.91
SQSTM1-208ENST00000485412 FMN2Q9NZ56 1722 aa20.73■□□□□ 0.91
SQSTM1-208ENST00000485412 TECPR2O15040 1411 aa20.73■□□□□ 0.91
SQSTM1-208ENST00000485412 RGPD8O14715 1765 aaPredicted RBP20.73■□□□□ 0.91
SQSTM1-208ENST00000485412 FOXO3O43524 673 aa20.73■□□□□ 0.91
SQSTM1-208ENST00000485412 TMEM132EQ6IEE7 984 aa20.73■□□□□ 0.91
SQSTM1-208ENST00000485412 BCL9LQ86UU0 1499 aa20.73■□□□□ 0.91
SQSTM1-208ENST00000485412 PIK3C2GO75747 1445 aa20.72■□□□□ 0.91
SQSTM1-208ENST00000485412 NUTM2FA1L443 756 aa20.72■□□□□ 0.91
SQSTM1-208ENST00000485412 CCDC125Q86Z20 511 aa20.72■□□□□ 0.91
SQSTM1-208ENST00000485412 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.72■□□□□ 0.91
SQSTM1-208ENST00000485412 EP400Q96L91 3159 aa20.7■□□□□ 0.9
SQSTM1-208ENST00000485412 SRCAPQ6ZRS2 3230 aa20.7■□□□□ 0.9
SQSTM1-208ENST00000485412 GJD4Q96KN9 370 aaPredicted RBP20.7■□□□□ 0.9
SQSTM1-208ENST00000485412 ANKRD30BQ9BXX2 1392 aa20.69■□□□□ 0.9
SQSTM1-208ENST00000485412 ABCC11Q96J66 1382 aa20.67■□□□□ 0.9
SQSTM1-208ENST00000485412 YTHDC2Q9H6S0 1430 aaKnown RBP20.67■□□□□ 0.9
SQSTM1-208ENST00000485412 KIF1AQ12756 1690 aa20.67■□□□□ 0.9
SQSTM1-208ENST00000485412 UNC5CLQ8IV45 518 aa20.65■□□□□ 0.9
SQSTM1-208ENST00000485412 GLI3P10071 1580 aa20.64■□□□□ 0.9
SQSTM1-208ENST00000485412 RALGAPBQ86X10 1494 aa20.64■□□□□ 0.89
SQSTM1-208ENST00000485412 BRWD3Q6RI45 1802 aa20.64■□□□□ 0.89
SQSTM1-208ENST00000485412 USP32Q8NFA0 1604 aa20.64■□□□□ 0.89
SQSTM1-208ENST00000485412 NRXN1Q9ULB1 1477 aa20.63■□□□□ 0.89
SQSTM1-208ENST00000485412 SLIT2O94813 1529 aa20.63■□□□□ 0.89
SQSTM1-208ENST00000485412 SPATA31A3Q5VYP0 1347 aa20.62■□□□□ 0.89
SQSTM1-208ENST00000485412 HAP1P54257 671 aaPredicted RBP20.62■□□□□ 0.89
SQSTM1-208ENST00000485412 BLMP54132 1417 aaPredicted RBP20.61■□□□□ 0.89
SQSTM1-208ENST00000485412 CFAP70Q5T0N1 1121 aa20.6■□□□□ 0.89
SQSTM1-208ENST00000485412 KRT28Q7Z3Y7 464 aa20.6■□□□□ 0.89
SQSTM1-208ENST00000485412 ABCA3Q99758 1704 aa20.59■□□□□ 0.89
SQSTM1-208ENST00000485412 SF3B2Q13435 895 aaKnown RBP20.58■□□□□ 0.89
SQSTM1-208ENST00000485412 C14orf93Q9H972 538 aaKnown RBP20.58■□□□□ 0.89
SQSTM1-208ENST00000485412 PLCH1Q4KWH8 1693 aa20.58■□□□□ 0.88
SQSTM1-208ENST00000485412 TNS3Q68CZ2 1445 aa20.57■□□□□ 0.88
SQSTM1-208ENST00000485412 RAB3GAP2Q9H2M9 1393 aa20.57■□□□□ 0.88
SQSTM1-208ENST00000485412 NWD2Q9ULI1 1742 aa20.56■□□□□ 0.88
SQSTM1-208ENST00000485412 PLEKHG5O94827 1062 aa20.56■□□□□ 0.88
SQSTM1-208ENST00000485412 PSME1Q06323 249 aa20.56■□□□□ 0.88
SQSTM1-208ENST00000485412 SAFB2Q14151 953 aaKnown RBP eCLIP20.56■□□□□ 0.88
SQSTM1-208ENST00000485412 CCDC9Q9Y3X0 531 aaKnown RBP20.56■□□□□ 0.88
SQSTM1-208ENST00000485412 SEPT12Q8IYM1 358 aa20.55■□□□□ 0.88
SQSTM1-208ENST00000485412 PHF8Q9UPP1 1060 aa20.55■□□□□ 0.88
SQSTM1-208ENST00000485412 DEFB132Q7Z7B7 95 aa20.54■□□□□ 0.88
SQSTM1-208ENST00000485412 ADGRB1O14514 1584 aa20.54■□□□□ 0.88
SQSTM1-208ENST00000485412 VPS72Q15906 364 aa20.53■□□□□ 0.88
SQSTM1-208ENST00000485412 LMOD2Q6P5Q4 547 aa20.53■□□□□ 0.88
SQSTM1-208ENST00000485412 CABLES1Q8TDN4 633 aa20.53■□□□□ 0.88
SQSTM1-208ENST00000485412 PRAM1Q96QH2 718 aa20.53■□□□□ 0.88
SQSTM1-208ENST00000485412 DHX57Q6P158 1386 aaKnown RBP20.51■□□□□ 0.87
SQSTM1-208ENST00000485412 SIRT1Q96EB6 747 aa20.51■□□□□ 0.87
SQSTM1-208ENST00000485412 DLC1Q96QB1 1528 aa20.51■□□□□ 0.87
SQSTM1-208ENST00000485412 ADGRB2O60241 1585 aa20.51■□□□□ 0.87
SQSTM1-208ENST00000485412 SBNO1A3KN83 1393 aa20.5■□□□□ 0.87
SQSTM1-208ENST00000485412 TRPM3Q9HCF6 1732 aaPredicted RBP20.5■□□□□ 0.87
SQSTM1-208ENST00000485412 ARHGEF10O15013 1369 aa20.49■□□□□ 0.87
SQSTM1-208ENST00000485412 A0A0G2JS52 829 aa20.49■□□□□ 0.87
SQSTM1-208ENST00000485412 MYT1Q01538 1121 aa20.49■□□□□ 0.87
SQSTM1-208ENST00000485412 KRT27Q7Z3Y8 459 aa20.49■□□□□ 0.87
SQSTM1-208ENST00000485412 LRP5O75197 1615 aa20.47■□□□□ 0.87
SQSTM1-208ENST00000485412 ALS2Q96Q42 1657 aa20.45■□□□□ 0.86
SQSTM1-208ENST00000485412 ONECUT3O60422 494 aaPredicted RBP20.45■□□□□ 0.86
SQSTM1-208ENST00000485412 PMFBP1Q8TBY8 1022 aa20.45■□□□□ 0.86
SQSTM1-208ENST00000485412 HIRIP3Q9BW71 556 aaPredicted RBP20.45■□□□□ 0.86
SQSTM1-208ENST00000485412 NRAPQ86VF7 1730 aa20.44■□□□□ 0.86
SQSTM1-208ENST00000485412 POGKQ9P215 609 aa20.44■□□□□ 0.86
SQSTM1-208ENST00000485412 ARHGEF28Q8N1W1 1705 aaKnown RBP20.44■□□□□ 0.86
SQSTM1-208ENST00000485412 FAM83GA6ND36 823 aa20.43■□□□□ 0.86
SQSTM1-208ENST00000485412 BAG6P46379 1132 aa20.43■□□□□ 0.86
SQSTM1-208ENST00000485412 TRAK1Q9UPV9 953 aa20.43■□□□□ 0.86
SQSTM1-208ENST00000485412 CRYBG1Q9Y4K1 1723 aa20.43■□□□□ 0.86
SQSTM1-208ENST00000485412 PRR36Q9H6K5 1346 aa20.43■□□□□ 0.86
SQSTM1-208ENST00000485412 ANKARQ7Z5J8 1434 aa20.43■□□□□ 0.86
SQSTM1-208ENST00000485412 KDM2AQ9Y2K7 1162 aa20.42■□□□□ 0.86
SQSTM1-208ENST00000485412 MINK1Q8N4C8 1332 aaPredicted RBP20.42■□□□□ 0.86
SQSTM1-208ENST00000485412 FAM98CQ17RN3 349 aaKnown RBP20.41■□□□□ 0.86
SQSTM1-208ENST00000485412 COL14A1Q05707 1796 aaKnown RBP20.41■□□□□ 0.86
SQSTM1-208ENST00000485412 PSDA5PKW4 1024 aaPredicted RBP20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 180.7 ms