RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 PZPP20742 1482 aa9.44□□□□□ -0.9
PTCD3-215ENST00000484203 DUOX2Q9NRD8 1548 aa9.44□□□□□ -0.9
PTCD3-215ENST00000484203 MAST1Q9Y2H9 1570 aa9.44□□□□□ -0.9
PTCD3-215ENST00000484203 MROH2AA6NES4 1674 aa9.44□□□□□ -0.9
PTCD3-215ENST00000484203 TCOF1Q13428 1488 aaKnown RBP9.43□□□□□ -0.9
PTCD3-215ENST00000484203 NLRP1Q9C000 1473 aa9.43□□□□□ -0.9
PTCD3-215ENST00000484203 NCKAP5LQ9HCH0 1330 aa9.43□□□□□ -0.9
PTCD3-215ENST00000484203 C2orf72A6NCS6 295 aa9.43□□□□□ -0.9
PTCD3-215ENST00000484203 ANKLE2Q86XL3 938 aa9.43□□□□□ -0.9
PTCD3-215ENST00000484203 LARP6Q9BRS8 491 aaKnown RBP9.43□□□□□ -0.9
PTCD3-215ENST00000484203 A2ML1A8K2U0 1454 aa9.42□□□□□ -0.9
PTCD3-215ENST00000484203 DAPK1P53355 1430 aa9.42□□□□□ -0.9
PTCD3-215ENST00000484203 FAM50AQ14320 339 aaKnown RBP9.42□□□□□ -0.9
PTCD3-215ENST00000484203 FBXO31Q5XUX0 539 aaPredicted RBP9.42□□□□□ -0.9
PTCD3-215ENST00000484203 CRISPLD2Q9H0B8 497 aa9.42□□□□□ -0.9
PTCD3-215ENST00000484203 GPHNQ9NQX3 736 aaPredicted RBP9.42□□□□□ -0.9
PTCD3-215ENST00000484203 SLC24A1O60721 1099 aa9.41□□□□□ -0.9
PTCD3-215ENST00000484203 C3P01024 1663 aa9.41□□□□□ -0.9
PTCD3-215ENST00000484203 ARHGAP31Q2M1Z3 1444 aa9.4□□□□□ -0.9
PTCD3-215ENST00000484203 KIF3CO14782 793 aa9.4□□□□□ -0.9
PTCD3-215ENST00000484203 WDR70Q9NW82 654 aa9.4□□□□□ -0.9
PTCD3-215ENST00000484203 CDAN1Q8IWY9 1227 aa9.39□□□□□ -0.91
PTCD3-215ENST00000484203 VSIG10Q8N0Z9 540 aa9.39□□□□□ -0.91
PTCD3-215ENST00000484203 CHIC2Q9UKJ5 165 aa9.39□□□□□ -0.91
PTCD3-215ENST00000484203 PTPN23Q9H3S7 1636 aa9.38□□□□□ -0.91
PTCD3-215ENST00000484203 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.38□□□□□ -0.91
PTCD3-215ENST00000484203 DDX27Q96GQ7 796 aaKnown RBP9.38□□□□□ -0.91
PTCD3-215ENST00000484203 CAMSAP1Q5T5Y3 1602 aa9.38□□□□□ -0.91
PTCD3-215ENST00000484203 EIF2AK4Q9P2K8 1649 aaKnown RBP9.38□□□□□ -0.91
PTCD3-215ENST00000484203 CEP170BQ9Y4F5 1589 aaPredicted RBP9.37□□□□□ -0.91
PTCD3-215ENST00000484203 ABCC3O15438 1527 aa9.37□□□□□ -0.91
PTCD3-215ENST00000484203 ADGRL2O95490 1459 aa9.37□□□□□ -0.91
PTCD3-215ENST00000484203 IQSEC2Q5JU85 1478 aa9.37□□□□□ -0.91
PTCD3-215ENST00000484203 FOXK1P85037 733 aa9.37□□□□□ -0.91
PTCD3-215ENST00000484203 DSG2Q14126 1118 aa9.37□□□□□ -0.91
PTCD3-215ENST00000484203 SLC52A1Q9NWF4 448 aa9.37□□□□□ -0.91
PTCD3-215ENST00000484203 EID1Q9Y6B2 187 aa9.37□□□□□ -0.91
PTCD3-215ENST00000484203 ROCK1Q13464 1354 aa9.37□□□□□ -0.91
PTCD3-215ENST00000484203 CLTCQ00610 1675 aaKnown RBP9.36□□□□□ -0.91
PTCD3-215ENST00000484203 RNF17Q9BXT8 1623 aaKnown RBP9.36□□□□□ -0.91
PTCD3-215ENST00000484203 PPP1R15BQ5SWA1 713 aa9.36□□□□□ -0.91
PTCD3-215ENST00000484203 ANKRD50Q9ULJ7 1429 aa9.36□□□□□ -0.91
PTCD3-215ENST00000484203 ERVK-7P63135 1459 aa9.35□□□□□ -0.91
PTCD3-215ENST00000484203 HDGFP51858 240 aaKnown RBP9.35□□□□□ -0.91
PTCD3-215ENST00000484203 MFSD10Q14728 455 aa9.35□□□□□ -0.91
PTCD3-215ENST00000484203 PLPP6Q8IY26 295 aa9.35□□□□□ -0.91
PTCD3-215ENST00000484203 KDM2AQ9Y2K7 1162 aa9.35□□□□□ -0.91
PTCD3-215ENST00000484203 DNMT1P26358 1616 aaKnown RBP9.34□□□□□ -0.91
PTCD3-215ENST00000484203 UGGT1Q9NYU2 1555 aa9.34□□□□□ -0.91
PTCD3-215ENST00000484203 PRDM15P57071 1507 aaPredicted RBP9.34□□□□□ -0.91
PTCD3-215ENST00000484203 MYO3AQ8NEV4 1616 aa9.34□□□□□ -0.91
PTCD3-215ENST00000484203 ZNF335Q9H4Z2 1342 aaPredicted RBP9.33□□□□□ -0.92
PTCD3-215ENST00000484203 ZNF142P52746 1687 aaPredicted RBP9.33□□□□□ -0.92
PTCD3-215ENST00000484203 ZC3H13Q5T200 1668 aaKnown RBP9.33□□□□□ -0.92
PTCD3-215ENST00000484203 LMTK2Q8IWU2 1503 aa9.33□□□□□ -0.92
PTCD3-215ENST00000484203 MARVELD3Q96A59 401 aa9.33□□□□□ -0.92
PTCD3-215ENST00000484203 SPATA31D1Q6ZQQ2 1576 aa9.33□□□□□ -0.92
PTCD3-215ENST00000484203 EMP3P54852 163 aa9.32□□□□□ -0.92
PTCD3-215ENST00000484203 DOK7Q18PE1 504 aa9.32□□□□□ -0.92
PTCD3-215ENST00000484203 MED14O60244 1454 aa9.32□□□□□ -0.92
PTCD3-215ENST00000484203 RPRD2Q5VT52 1461 aaKnown RBP9.32□□□□□ -0.92
PTCD3-215ENST00000484203 STRCQ7RTU9 1775 aa9.32□□□□□ -0.92
PTCD3-215ENST00000484203 NPHP4O75161 1426 aaPredicted RBP9.31□□□□□ -0.92
PTCD3-215ENST00000484203 TOM1O60784 492 aa9.31□□□□□ -0.92
PTCD3-215ENST00000484203 TXNDC2Q86VQ3 553 aa9.31□□□□□ -0.92
PTCD3-215ENST00000484203 ZNF710Q8N1W2 664 aa9.31□□□□□ -0.92
PTCD3-215ENST00000484203 UBAP1LF5GYI3 381 aa9.3□□□□□ -0.92
PTCD3-215ENST00000484203 IDI1Q13907 227 aa9.3□□□□□ -0.92
PTCD3-215ENST00000484203 LTBP4Q8N2S1 1624 aa9.3□□□□□ -0.92
PTCD3-215ENST00000484203 CPS1P31327 1500 aa9.3□□□□□ -0.92
PTCD3-215ENST00000484203 TMEM2Q9UHN6 1383 aa9.29□□□□□ -0.92
PTCD3-215ENST00000484203 RIMBP2O15034 1052 aa9.29□□□□□ -0.92
PTCD3-215ENST00000484203 MROH1Q8NDA8 1641 aa9.29□□□□□ -0.92
PTCD3-215ENST00000484203 NOS1P29475 1434 aa9.29□□□□□ -0.92
PTCD3-215ENST00000484203 ACIN1Q9UKV3 1341 aaKnown RBP9.29□□□□□ -0.92
PTCD3-215ENST00000484203 SCAF11Q99590 1463 aaKnown RBP9.28□□□□□ -0.92
PTCD3-215ENST00000484203 HOXB3P14651 431 aaPredicted RBP9.28□□□□□ -0.92
PTCD3-215ENST00000484203 ITGAEP38570 1179 aa9.28□□□□□ -0.92
PTCD3-215ENST00000484203 E2F4Q16254 413 aa9.28□□□□□ -0.92
PTCD3-215ENST00000484203 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.28□□□□□ -0.92
PTCD3-215ENST00000484203 VWDEQ8N2E2 1590 aa9.28□□□□□ -0.92
PTCD3-215ENST00000484203 NUP155O75694 1391 aa9.27□□□□□ -0.93
PTCD3-215ENST00000484203 CROCC2H7BZ55 1655 aa9.27□□□□□ -0.93
PTCD3-215ENST00000484203 ARHGAP23Q9P227 1491 aa9.27□□□□□ -0.93
PTCD3-215ENST00000484203 DEPDC5O75140 1603 aa9.27□□□□□ -0.93
PTCD3-215ENST00000484203 SLIT1O75093 1534 aa9.26□□□□□ -0.93
PTCD3-215ENST00000484203 RRBP1Q9P2E9 1410 aaKnown RBP9.26□□□□□ -0.93
PTCD3-215ENST00000484203 LTKP29376 864 aa9.26□□□□□ -0.93
PTCD3-215ENST00000484203 PPP1R15AO75807 674 aaPredicted RBP9.25□□□□□ -0.93
PTCD3-215ENST00000484203 UPF1Q92900 1129 aaKnown RBP eCLIP9.25□□□□□ -0.93
PTCD3-215ENST00000484203 EFCAB6Q5THR3 1501 aa9.25□□□□□ -0.93
PTCD3-215ENST00000484203 HOXB1P14653 301 aaPredicted RBP9.24□□□□□ -0.93
PTCD3-215ENST00000484203 KCNA6P17658 529 aa9.24□□□□□ -0.93
PTCD3-215ENST00000484203 PPARGC1BQ86YN6 1023 aaKnown RBP9.24□□□□□ -0.93
PTCD3-215ENST00000484203 BCANQ96GW7 911 aa9.24□□□□□ -0.93
PTCD3-215ENST00000484203 FAM205CA6NFA0 338 aa9.23□□□□□ -0.93
PTCD3-215ENST00000484203 SLC34A2O95436 690 aa9.23□□□□□ -0.93
PTCD3-215ENST00000484203 CAMK2BQ13554 666 aa9.23□□□□□ -0.93
PTCD3-215ENST00000484203 ZSWIM6Q9HCJ5 1215 aa9.23□□□□□ -0.93
PTCD3-215ENST00000484203 NEURL4Q96JN8 1562 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms