RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 ANKRD30AQ9BXX3 1397 aa26.43■■□□□ 1.82
SDF4-206ENST00000478938 ZSCAN23Q3MJ62 389 aa26.43■■□□□ 1.82
SDF4-206ENST00000478938 ZNF830Q96NB3 372 aaPredicted RBP26.43■■□□□ 1.82
SDF4-206ENST00000478938 CD2BP2O95400 341 aaKnown RBP26.42■■□□□ 1.82
SDF4-206ENST00000478938 AEBP2Q6ZN18 517 aaPredicted RBP26.42■■□□□ 1.82
SDF4-206ENST00000478938 MYRIPQ8NFW9 859 aa26.42■■□□□ 1.82
SDF4-206ENST00000478938 ZBTB22O15209 634 aa26.41■■□□□ 1.82
SDF4-206ENST00000478938 MCM5P33992 734 aa26.41■■□□□ 1.82
SDF4-206ENST00000478938 PLCD3Q8N3E9 789 aa26.41■■□□□ 1.82
SDF4-206ENST00000478938 BAG4O95429 457 aaKnown RBP26.4■■□□□ 1.82
SDF4-206ENST00000478938 FAM177BA6PVY3 158 aa26.4■■□□□ 1.82
SDF4-206ENST00000478938 IGSF3O75054 1194 aa26.4■■□□□ 1.82
SDF4-206ENST00000478938 PRIM1P49642 420 aaKnown RBP26.4■■□□□ 1.82
SDF4-206ENST00000478938 TAF7LQ5H9L4 462 aa26.39■■□□□ 1.82
SDF4-206ENST00000478938 RBM25P49756 843 aaKnown RBP26.39■■□□□ 1.81
SDF4-206ENST00000478938 FAM135AQ9P2D6 1515 aa26.38■■□□□ 1.81
SDF4-206ENST00000478938 BCL2L13Q9BXK5 485 aa26.38■■□□□ 1.81
SDF4-206ENST00000478938 IFT140Q96RY7 1462 aa26.38■■□□□ 1.81
SDF4-206ENST00000478938 ERBINQ96RT1 1412 aa26.37■■□□□ 1.81
SDF4-206ENST00000478938 SPDYE4A6NLX3 237 aa26.37■■□□□ 1.81
SDF4-206ENST00000478938 CCDC39Q9UFE4 941 aa26.37■■□□□ 1.81
SDF4-206ENST00000478938 CEP170Q5SW79 1584 aa26.36■■□□□ 1.81
SDF4-206ENST00000478938 TRPM1Q7Z4N2 1603 aa26.36■■□□□ 1.81
SDF4-206ENST00000478938 DNTTIP2Q5QJE6 756 aaKnown RBP26.35■■□□□ 1.81
SDF4-206ENST00000478938 CGNQ9P2M7 1197 aaKnown RBP26.35■■□□□ 1.81
SDF4-206ENST00000478938 TARBP1Q13395 1621 aaKnown RBP26.35■■□□□ 1.81
SDF4-206ENST00000478938 MCTP1Q6DN14 999 aa26.35■■□□□ 1.81
SDF4-206ENST00000478938 KNSTRNQ9Y448 316 aa26.35■■□□□ 1.81
SDF4-206ENST00000478938 AMER1Q5JTC6 1135 aaPredicted RBP26.34■■□□□ 1.81
SDF4-206ENST00000478938 GAS2L2Q8NHY3 880 aa26.34■■□□□ 1.81
SDF4-206ENST00000478938 PRAG1Q86YV5 1406 aa26.33■■□□□ 1.81
SDF4-206ENST00000478938 RARSP54136 660 aaKnown RBP26.33■■□□□ 1.81
SDF4-206ENST00000478938 NUP155O75694 1391 aa26.33■■□□□ 1.81
SDF4-206ENST00000478938 MAGI2Q86UL8 1455 aa26.33■■□□□ 1.81
SDF4-206ENST00000478938 PLXNC1O60486 1568 aa26.32■■□□□ 1.8
SDF4-206ENST00000478938 RBM27Q9P2N5 1060 aaKnown RBP26.32■■□□□ 1.8
SDF4-206ENST00000478938 CLEC17AQ6ZS10 378 aa26.31■■□□□ 1.8
SDF4-206ENST00000478938 AK9Q5TCS8 1911 aa26.31■■□□□ 1.8
SDF4-206ENST00000478938 KDM5DQ9BY66 1539 aa26.31■■□□□ 1.8
SDF4-206ENST00000478938 TMF1P82094 1093 aa26.31■■□□□ 1.8
SDF4-206ENST00000478938 KIF2CQ99661 725 aa26.31■■□□□ 1.8
SDF4-206ENST00000478938 KIAA2012Q0VF49 1180 aa26.3■■□□□ 1.8
SDF4-206ENST00000478938 K7ELQ4 463 aaPredicted RBP26.3■■□□□ 1.8
SDF4-206ENST00000478938 ABCC2Q92887 1545 aa26.3■■□□□ 1.8
SDF4-206ENST00000478938 RBM42Q9BTD8 480 aaKnown RBP26.29■■□□□ 1.8
SDF4-206ENST00000478938 PAXIP1Q6ZW49 1069 aaPredicted RBP26.29■■□□□ 1.8
SDF4-206ENST00000478938 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP26.27■■□□□ 1.83e-6■■□□□ 11.9
SDF4-206ENST00000478938 LMBRD1Q9NUN5 540 aa26.27■■□□□ 1.8
SDF4-206ENST00000478938 ADGBQ8N7X0 1667 aa26.26■■□□□ 1.79
SDF4-206ENST00000478938 PTMAP06454 111 aaKnown RBP26.26■■□□□ 1.79
SDF4-206ENST00000478938 RGL3Q3MIN7 710 aa26.26■■□□□ 1.79
SDF4-206ENST00000478938 WWC1Q8IX03 1113 aa26.25■■□□□ 1.79
SDF4-206ENST00000478938 ANKRD50Q9ULJ7 1429 aa26.25■■□□□ 1.79
SDF4-206ENST00000478938 TAF3Q5VWG9 929 aa26.24■■□□□ 1.79
SDF4-206ENST00000478938 PIK3C2GO75747 1445 aa26.24■■□□□ 1.79
SDF4-206ENST00000478938 MPNDQ8N594 471 aa26.24■■□□□ 1.79
SDF4-206ENST00000478938 RNF214Q8ND24 703 aa26.24■■□□□ 1.79
SDF4-206ENST00000478938 PRIMPOLQ96LW4 560 aa26.24■■□□□ 1.79
SDF4-206ENST00000478938 GTF2F1P35269 517 aaKnown RBP eCLIP26.23■■□□□ 1.796e-7■■■■□ 22.1
SDF4-206ENST00000478938 MAPK8IP2Q13387 824 aaPredicted RBP26.23■■□□□ 1.79
SDF4-206ENST00000478938 GPRASP1Q5JY77 1395 aa26.23■■□□□ 1.79
SDF4-206ENST00000478938 WDR7Q9Y4E6 1490 aa26.22■■□□□ 1.79
SDF4-206ENST00000478938 CDK11BP21127 795 aaKnown RBP26.22■■□□□ 1.79
SDF4-206ENST00000478938 ARHGAP31Q2M1Z3 1444 aa26.22■■□□□ 1.79
SDF4-206ENST00000478938 BCL2L12Q9HB09 334 aa26.22■■□□□ 1.79
SDF4-206ENST00000478938 GPT2Q8TD30 523 aa26.21■■□□□ 1.79
SDF4-206ENST00000478938 PRDM15P57071 1507 aaPredicted RBP26.21■■□□□ 1.79
SDF4-206ENST00000478938 SYCE3A1L190 88 aa26.21■■□□□ 1.79
SDF4-206ENST00000478938 HMGN5P82970 282 aaKnown RBP26.21■■□□□ 1.79
SDF4-206ENST00000478938 MVPQ14764 893 aaKnown RBP26.21■■□□□ 1.79
SDF4-206ENST00000478938 NEUROD2Q15784 382 aa26.21■■□□□ 1.79
SDF4-206ENST00000478938 ZNF771Q7L3S4 317 aaPredicted RBP26.21■■□□□ 1.79
SDF4-206ENST00000478938 KIF3AQ9Y496 699 aa26.21■■□□□ 1.79
SDF4-206ENST00000478938 U2AF2P26368 475 aaKnown RBP eCLIP26.2■■□□□ 1.79
SDF4-206ENST00000478938 PDCL2Q8N4E4 241 aa26.2■■□□□ 1.79
SDF4-206ENST00000478938 ZNF777Q9ULD5 760 aaPredicted RBP26.2■■□□□ 1.78
SDF4-206ENST00000478938 C17orf53Q8N3J3 647 aaPredicted RBP26.19■■□□□ 1.78
SDF4-206ENST00000478938 PRPF40AO75400 957 aaKnown RBP26.18■■□□□ 1.78
SDF4-206ENST00000478938 PKP1Q13835 747 aa26.18■■□□□ 1.78
SDF4-206ENST00000478938 SHROOM2Q13796 1616 aa26.18■■□□□ 1.78
SDF4-206ENST00000478938 LRSAM1Q6UWE0 723 aa26.18■■□□□ 1.78
SDF4-206ENST00000478938 ADGRL2O95490 1459 aa26.17■■□□□ 1.78
SDF4-206ENST00000478938 EIF4G3O43432 1585 aaKnown RBP26.17■■□□□ 1.78
SDF4-206ENST00000478938 TMEM63CQ9P1W3 806 aa26.17■■□□□ 1.78
SDF4-206ENST00000478938 RRP7AQ9Y3A4 280 aaKnown RBP26.17■■□□□ 1.78
SDF4-206ENST00000478938 IRX5P78411 483 aaPredicted RBP26.14■■□□□ 1.78
SDF4-206ENST00000478938 CFDP1Q9UEE9 299 aaPredicted RBP26.14■■□□□ 1.77
SDF4-206ENST00000478938 NOLC1Q14978 699 aaKnown RBP eCLIP26.13■■□□□ 1.77
SDF4-206ENST00000478938 CHAMP1Q96JM3 812 aa26.13■■□□□ 1.77
SDF4-206ENST00000478938 FTSJ3Q8IY81 847 aaKnown RBP26.13■■□□□ 1.77
SDF4-206ENST00000478938 NSFL1CQ9UNZ2 370 aaKnown RBP26.13■■□□□ 1.77
SDF4-206ENST00000478938 KIF16BQ96L93 1317 aa26.12■■□□□ 1.77
SDF4-206ENST00000478938 PIBF1Q8WXW3 757 aa26.12■■□□□ 1.77
SDF4-206ENST00000478938 HDAC1Q13547 482 aaPredicted RBP26.11■■□□□ 1.77
SDF4-206ENST00000478938 ASXL1Q8IXJ9 1541 aa26.11■■□□□ 1.77
SDF4-206ENST00000478938 LNPKQ9C0E8 428 aa26.11■■□□□ 1.77
SDF4-206ENST00000478938 KCNJ4P48050 445 aa26.09■■□□□ 1.77
SDF4-206ENST00000478938 ITSN2Q9NZM3 1697 aa26.09■■□□□ 1.77
SDF4-206ENST00000478938 CYP2E1P05181 493 aaPredicted RBP26.09■■□□□ 1.77
SDF4-206ENST00000478938 DZIP1LQ8IYY4 767 aaKnown RBP26.09■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms