RNA–Protein interactions for RNA: ENST00000477334.1

RBM39-231, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 949 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-231	ENST00000477334	LIAT1	Q6ZQX7	453 aa		9.21	□□□□□ -0.94
RBM39-231	ENST00000477334	ZNF598	Q86UK7	904 aa	Known RBP	9.2	□□□□□ -0.94
RBM39-231	ENST00000477334	FAM160A2	Q8N612	972 aa	Predicted RBP	9.2	□□□□□ -0.94
RBM39-231	ENST00000477334	RNF19B	Q6ZMZ0	732 aa		9.19	□□□□□ -0.94
RBM39-231	ENST00000477334	USP46	P62068	366 aa		9.18	□□□□□ -0.94
RBM39-231	ENST00000477334		Q3C1V9	767 aa		9.18	□□□□□ -0.94
RBM39-231	ENST00000477334	MSS51	Q4VC12	460 aa		9.18	□□□□□ -0.94
RBM39-231	ENST00000477334	TRIM67	Q6ZTA4	783 aa		9.18	□□□□□ -0.94
RBM39-231	ENST00000477334	DDRGK1	Q96HY6	314 aa		9.18	□□□□□ -0.94
RBM39-231	ENST00000477334	PRDM9	Q9NQV7	894 aa		9.18	□□□□□ -0.94
RBM39-231	ENST00000477334	PLEKHG3	A1L390	1219 aa		9.17	□□□□□ -0.94
RBM39-231	ENST00000477334	LCE2B	O14633	110 aa		9.17	□□□□□ -0.94
RBM39-231	ENST00000477334	ZNF697	Q5TEC3	545 aa		9.17	□□□□□ -0.94
RBM39-231	ENST00000477334	BEGAIN	Q9BUH8	593 aa		9.17	□□□□□ -0.94
RBM39-231	ENST00000477334	FCF1	Q9Y324	198 aa	Known RBP	9.17	□□□□□ -0.94
RBM39-231	ENST00000477334	HOXA2	O43364	376 aa		9.16	□□□□□ -0.94
RBM39-231	ENST00000477334	TRAF7	Q6Q0C0	670 aa		9.16	□□□□□ -0.94
RBM39-231	ENST00000477334	PRR20E	P86478	221 aa		9.15	□□□□□ -0.94
RBM39-231	ENST00000477334	PRR20C	P86479	221 aa		9.15	□□□□□ -0.94
RBM39-231	ENST00000477334	PRR20D	P86480	221 aa		9.15	□□□□□ -0.94
RBM39-231	ENST00000477334	PRR20B	P86481	221 aa		9.15	□□□□□ -0.94
RBM39-231	ENST00000477334	PRR20A	P86496	221 aa		9.15	□□□□□ -0.94
RBM39-231	ENST00000477334	RPIA	P49247	311 aa		9.14	□□□□□ -0.95
RBM39-231	ENST00000477334	HLA-C	Q95604	372 aa		9.14	□□□□□ -0.95
RBM39-231	ENST00000477334	GDF9	O60383	454 aa		9.12	□□□□□ -0.95
RBM39-231	ENST00000477334	USB1	Q9BQ65	265 aa	Known RBP	9.12	□□□□□ -0.95
RBM39-231	ENST00000477334	MMP16	P51512	607 aa		9.11	□□□□□ -0.95
RBM39-231	ENST00000477334	NUTM1	Q86Y26	1132 aa		9.11	□□□□□ -0.95
RBM39-231	ENST00000477334	TNFRSF10A	O00220	468 aa		9.1	□□□□□ -0.95
RBM39-231	ENST00000477334	GUCA2A	Q02747	115 aa		9.1	□□□□□ -0.95
RBM39-231	ENST00000477334	CD2BP2	O95400	341 aa	Known RBP	9.09	□□□□□ -0.95
RBM39-231	ENST00000477334	DXO	O77932	396 aa	Known RBP	9.08	□□□□□ -0.96
RBM39-231	ENST00000477334	PKDCC	Q504Y2	493 aa		9.08	□□□□□ -0.96
RBM39-231	ENST00000477334	SPIRE2	Q8WWL2	714 aa		9.08	□□□□□ -0.96
RBM39-231	ENST00000477334	TBC1D2	Q9BYX2	928 aa		9.08	□□□□□ -0.96
RBM39-231	ENST00000477334	PKD2L1	Q9P0L9	805 aa		9.08	□□□□□ -0.96
RBM39-231	ENST00000477334	ZBTB24	O43167	697 aa	Predicted RBP	9.07	□□□□□ -0.96
RBM39-231	ENST00000477334	DGAT1	O75907	488 aa		9.07	□□□□□ -0.96
RBM39-231	ENST00000477334	MYSM1	Q5VVJ2	828 aa		9.06	□□□□□ -0.96
RBM39-231	ENST00000477334	RSPH6A	Q9H0K4	717 aa		9.06	□□□□□ -0.96
RBM39-231	ENST00000477334	POLR3E	Q9NVU0	708 aa		9.06	□□□□□ -0.96
RBM39-231	ENST00000477334	FOXC1	Q12948	553 aa		9.05	□□□□□ -0.96
RBM39-231	ENST00000477334	DIXDC1	Q155Q3	683 aa		9.05	□□□□□ -0.96
RBM39-231	ENST00000477334	SH3D19	Q5HYK7	790 aa		9.05	□□□□□ -0.96
RBM39-231	ENST00000477334	SYMPK	Q92797	1274 aa	Known RBP	9.05	□□□□□ -0.96
RBM39-231	ENST00000477334	ATP1B4	Q9UN42	357 aa	Predicted RBP	9.05	□□□□□ -0.96
RBM39-231	ENST00000477334	FAM187A	A6NFU0	413 aa		9.04	□□□□□ -0.96
RBM39-231	ENST00000477334	FDX1	P10109	184 aa		9.04	□□□□□ -0.96
RBM39-231	ENST00000477334	RETREG3	Q86VR2	466 aa		9.04	□□□□□ -0.96
RBM39-231	ENST00000477334	PCDHGC3	Q9UN70	934 aa		9.04	□□□□□ -0.96
RBM39-231	ENST00000477334	JUND	P17535	347 aa		9.03	□□□□□ -0.96
RBM39-231	ENST00000477334	TRIM32	Q13049	653 aa		9.03	□□□□□ -0.96
RBM39-231	ENST00000477334	SKIV2L	Q15477	1246 aa	Known RBP	9.03	□□□□□ -0.96
RBM39-231	ENST00000477334	GOPC	Q9HD26	462 aa		9.03	□□□□□ -0.96
RBM39-231	ENST00000477334	MOXD2P	A6NHM9	499 aa		9.02	□□□□□ -0.97
RBM39-231	ENST00000477334	NDUFV2	P19404	249 aa		9.02	□□□□□ -0.97
RBM39-231	ENST00000477334	MYT1	Q01538	1121 aa		9.02	□□□□□ -0.97
RBM39-231	ENST00000477334	PCMTD1	Q96MG8	357 aa	Predicted RBP	9.02	□□□□□ -0.97
RBM39-231	ENST00000477334	C6orf229	H3BNL8	230 aa		9.01	□□□□□ -0.97
RBM39-231	ENST00000477334	CLK2	P49760	499 aa	Known RBP	9.01	□□□□□ -0.97
RBM39-231	ENST00000477334	RIC3	Q7Z5B4	369 aa		9.01	□□□□□ -0.97
RBM39-231	ENST00000477334	CCDC24	Q8N4L8	307 aa		9.01	□□□□□ -0.97
RBM39-231	ENST00000477334	PROCA1	Q8NCQ7	364 aa	Predicted RBP	9.01	□□□□□ -0.97
RBM39-231	ENST00000477334	GTF3C3	Q9Y5Q9	886 aa		9.01	□□□□□ -0.97
RBM39-231	ENST00000477334	TOR4A	Q9NXH8	423 aa		9	□□□□□ -0.97
RBM39-231	ENST00000477334	LIMD1	Q9UGP4	676 aa		9	□□□□□ -0.97
RBM39-231	ENST00000477334	CSPP1	Q1MSJ5	1256 aa		8.99	□□□□□ -0.97
RBM39-231	ENST00000477334	RSBN1L	Q6PCB5	846 aa	Predicted RBP	8.99	□□□□□ -0.97
RBM39-231	ENST00000477334	CYP4X1	Q8N118	509 aa		8.99	□□□□□ -0.97
RBM39-231	ENST00000477334	WNT7A	O00755	349 aa		8.98	□□□□□ -0.97
RBM39-231	ENST00000477334	SPTLC1	O15269	473 aa		8.97	□□□□□ -0.97
RBM39-231	ENST00000477334	GJA5	P36382	358 aa		8.97	□□□□□ -0.97
RBM39-231	ENST00000477334	NUDT12	Q9BQG2	462 aa		8.97	□□□□□ -0.97
RBM39-231	ENST00000477334	MTMR2	Q13614	643 aa		8.96	□□□□□ -0.98
RBM39-231	ENST00000477334	ZNF787	Q6DD87	383 aa		8.96	□□□□□ -0.98
RBM39-231	ENST00000477334	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	8.96	□□□□□ -0.98
RBM39-231	ENST00000477334	PCDHB15	Q9Y5E8	787 aa		8.96	□□□□□ -0.98
RBM39-231	ENST00000477334	WNT7B	P56706	349 aa		8.95	□□□□□ -0.98
RBM39-231	ENST00000477334	TTC24	A2A3L6	582 aa	Predicted RBP	8.94	□□□□□ -0.98
RBM39-231	ENST00000477334	SPDYE5	A6NIY4	337 aa		8.94	□□□□□ -0.98
RBM39-231	ENST00000477334	AVP	P01185	164 aa		8.94	□□□□□ -0.98
RBM39-231	ENST00000477334	MRGPRX2	Q96LB1	330 aa		8.94	□□□□□ -0.98
RBM39-231	ENST00000477334	AAAS	Q9NRG9	546 aa		8.94	□□□□□ -0.98
RBM39-231	ENST00000477334	ST8SIA5	O15466	376 aa		8.93	□□□□□ -0.98
RBM39-231	ENST00000477334	CCNYL3	P0C7X3	344 aa		8.93	□□□□□ -0.98
RBM39-231	ENST00000477334	SKOR1	P84550	965 aa		8.93	□□□□□ -0.98
RBM39-231	ENST00000477334	QPCT	Q16769	361 aa		8.93	□□□□□ -0.98
RBM39-231	ENST00000477334	PTPRN	Q16849	979 aa		8.93	□□□□□ -0.98
RBM39-231	ENST00000477334	FBXO31	Q5XUX0	539 aa	Predicted RBP	8.93	□□□□□ -0.98
RBM39-231	ENST00000477334	CRIPAK	Q8N1N5	446 aa		8.93	□□□□□ -0.98
RBM39-231	ENST00000477334	SNIP1	Q8TAD8	396 aa	Known RBP	8.93	□□□□□ -0.98
RBM39-231	ENST00000477334	PRR7	Q8TB68	274 aa		8.93	□□□□□ -0.98
RBM39-231	ENST00000477334	DESI1	Q6ICB0	168 aa		8.92	□□□□□ -0.98
RBM39-231	ENST00000477334	PTCRA	Q6ISU1	281 aa	Predicted RBP	8.92	□□□□□ -0.98
RBM39-231	ENST00000477334	CABLES1	Q8TDN4	633 aa		8.92	□□□□□ -0.98
RBM39-231	ENST00000477334	NUTM2B	A6NNL0	878 aa	Predicted RBP	8.91	□□□□□ -0.98
RBM39-231	ENST00000477334	NUTM2E	B1AL46	878 aa	Predicted RBP	8.91	□□□□□ -0.98
RBM39-231	ENST00000477334	TUSC1	Q2TAM9	212 aa		8.91	□□□□□ -0.98
RBM39-231	ENST00000477334	RC3H1	Q5TC82	1133 aa	Known RBP	8.91	□□□□□ -0.98
RBM39-231	ENST00000477334	NUTM2D	Q5VT03	806 aa	Predicted RBP	8.91	□□□□□ -0.98

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