RNA–Protein interactions for RNA: ENST00000477052.1

VARS2-208, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 3

Gene VARS2, Length 552 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-208ENST00000477052 ESCO1Q5FWF5 840 aa17.36■□□□□ 0.37
VARS2-208ENST00000477052 PRAG1Q86YV5 1406 aa17.35■□□□□ 0.37
VARS2-208ENST00000477052 IFT172Q9UG01 1749 aa17.35■□□□□ 0.37
VARS2-208ENST00000477052 SOS2Q07890 1332 aaPredicted RBP17.34■□□□□ 0.37
VARS2-208ENST00000477052 ANKRD30BQ9BXX2 1392 aa17.33■□□□□ 0.36
VARS2-208ENST00000477052 QTRT2Q9H974 415 aaKnown RBP17.33■□□□□ 0.36
VARS2-208ENST00000477052 LRPPRCP42704 1394 aaKnown RBP17.32■□□□□ 0.36
VARS2-208ENST00000477052 FOXO3O43524 673 aa17.32■□□□□ 0.36
VARS2-208ENST00000477052 NGLY1Q96IV0 654 aa17.32■□□□□ 0.36
VARS2-208ENST00000477052 UPF1Q92900 1129 aaKnown RBP eCLIP17.31■□□□□ 0.36
VARS2-208ENST00000477052 LAMC1P11047 1609 aa17.31■□□□□ 0.36
VARS2-208ENST00000477052 PIK3C2GO75747 1445 aa17.3■□□□□ 0.36
VARS2-208ENST00000477052 RAB3GAP2Q9H2M9 1393 aa17.3■□□□□ 0.36
VARS2-208ENST00000477052 CFAP70Q5T0N1 1121 aa17.3■□□□□ 0.36
VARS2-208ENST00000477052 CDC42BPGQ6DT37 1551 aa17.3■□□□□ 0.36
VARS2-208ENST00000477052 YTHDC2Q9H6S0 1430 aaKnown RBP17.29■□□□□ 0.36
VARS2-208ENST00000477052 ABCC11Q96J66 1382 aa17.28■□□□□ 0.36
VARS2-208ENST00000477052 SAFB2Q14151 953 aaKnown RBP eCLIP17.28■□□□□ 0.36
VARS2-208ENST00000477052 TECPR2O15040 1411 aa17.28■□□□□ 0.36
VARS2-208ENST00000477052 RGS12O14924 1447 aa17.27■□□□□ 0.35
VARS2-208ENST00000477052 NPHP3Q7Z494 1330 aa17.26■□□□□ 0.35
VARS2-208ENST00000477052 PXDNQ92626 1479 aa17.26■□□□□ 0.35
VARS2-208ENST00000477052 PLEKHG5O94827 1062 aa17.26■□□□□ 0.35
VARS2-208ENST00000477052 C14orf93Q9H972 538 aaKnown RBP17.26■□□□□ 0.35
VARS2-208ENST00000477052 USP21Q9UK80 565 aa17.26■□□□□ 0.35
VARS2-208ENST00000477052 RBM6P78332 1123 aaKnown RBP17.25■□□□□ 0.35
VARS2-208ENST00000477052 KNDC1Q76NI1 1749 aa17.24■□□□□ 0.35
VARS2-208ENST00000477052 CDK12Q9NYV4 1490 aaPredicted RBP17.24■□□□□ 0.35
VARS2-208ENST00000477052 PRAM1Q96QH2 718 aa17.23■□□□□ 0.35
VARS2-208ENST00000477052 KDM2AQ9Y2K7 1162 aa17.23■□□□□ 0.35
VARS2-208ENST00000477052 FMN2Q9NZ56 1722 aa17.22■□□□□ 0.35
VARS2-208ENST00000477052 MYOM2P54296 1465 aa17.22■□□□□ 0.35
VARS2-208ENST00000477052 NRXN1Q9ULB1 1477 aa17.22■□□□□ 0.35
VARS2-208ENST00000477052 COL22A1Q8NFW1 1626 aaPredicted RBP17.21■□□□□ 0.35
VARS2-208ENST00000477052 DHX57Q6P158 1386 aaKnown RBP17.21■□□□□ 0.35
VARS2-208ENST00000477052 RGPD8O14715 1765 aaPredicted RBP17.2■□□□□ 0.34
VARS2-208ENST00000477052 KRT28Q7Z3Y7 464 aa17.2■□□□□ 0.34
VARS2-208ENST00000477052 FNBP4Q8N3X1 1017 aaPredicted RBP17.2■□□□□ 0.34
VARS2-208ENST00000477052 TRPC5Q9UL62 973 aaPredicted RBP17.19■□□□□ 0.34
VARS2-208ENST00000477052 HIRIP3Q9BW71 556 aaPredicted RBP17.18■□□□□ 0.34
VARS2-208ENST00000477052 TRAK1Q9UPV9 953 aa17.18■□□□□ 0.34
VARS2-208ENST00000477052 SPATA31A3Q5VYP0 1347 aa17.18■□□□□ 0.34
VARS2-208ENST00000477052 ATRNO75882 1429 aa17.17■□□□□ 0.34
VARS2-208ENST00000477052 CABLES1Q8TDN4 633 aa17.17■□□□□ 0.34
VARS2-208ENST00000477052 DCAF11Q8TEB1 546 aa17.17■□□□□ 0.34
VARS2-208ENST00000477052 SIRT1Q96EB6 747 aa17.17■□□□□ 0.34
VARS2-208ENST00000477052 POGKQ9P215 609 aa17.17■□□□□ 0.34
VARS2-208ENST00000477052 PHF8Q9UPP1 1060 aa17.17■□□□□ 0.34
VARS2-208ENST00000477052 PMFBP1Q8TBY8 1022 aa17.16■□□□□ 0.34
VARS2-208ENST00000477052 BCL9LQ86UU0 1499 aa17.16■□□□□ 0.34
VARS2-208ENST00000477052 LMOD2Q6P5Q4 547 aa17.15■□□□□ 0.34
VARS2-208ENST00000477052 MINK1Q8N4C8 1332 aaPredicted RBP17.15■□□□□ 0.34
VARS2-208ENST00000477052 ACIN1Q9UKV3 1341 aaKnown RBP17.15■□□□□ 0.34
VARS2-208ENST00000477052 KIF1AQ12756 1690 aa17.14■□□□□ 0.33
VARS2-208ENST00000477052 MARF1Q9Y4F3 1742 aaKnown RBP17.14■□□□□ 0.33
VARS2-208ENST00000477052 ADGRB1O14514 1584 aa17.14■□□□□ 0.33
VARS2-208ENST00000477052 USP32Q8NFA0 1604 aa17.12■□□□□ 0.33
VARS2-208ENST00000477052 PSME1Q06323 249 aa17.12■□□□□ 0.33
VARS2-208ENST00000477052 HAP1P54257 671 aaPredicted RBP17.11■□□□□ 0.33
VARS2-208ENST00000477052 GJD4Q96KN9 370 aaPredicted RBP17.1■□□□□ 0.33
VARS2-208ENST00000477052 PRR36Q9H6K5 1346 aa17.1■□□□□ 0.33
VARS2-208ENST00000477052 TNS3Q68CZ2 1445 aa17.1■□□□□ 0.33
VARS2-208ENST00000477052 DLC1Q96QB1 1528 aa17.1■□□□□ 0.33
VARS2-208ENST00000477052 ATAD2Q6PL18 1390 aa17.09■□□□□ 0.33
VARS2-208ENST00000477052 UNC5CLQ8IV45 518 aa17.08■□□□□ 0.32
VARS2-208ENST00000477052 SLIT2O94813 1529 aa17.07■□□□□ 0.32
VARS2-208ENST00000477052 GLI3P10071 1580 aa17.06■□□□□ 0.32
VARS2-208ENST00000477052 RALGAPBQ86X10 1494 aa17.06■□□□□ 0.32
VARS2-208ENST00000477052 SBNO1A3KN83 1393 aa17.05■□□□□ 0.32
VARS2-208ENST00000477052 ADGRB2O60241 1585 aa17.05■□□□□ 0.32
VARS2-208ENST00000477052 ANKARQ7Z5J8 1434 aa17.04■□□□□ 0.32
VARS2-208ENST00000477052 FAM83GA6ND36 823 aa17.04■□□□□ 0.32
VARS2-208ENST00000477052 WASLO00401 505 aaPredicted RBP17.04■□□□□ 0.32
VARS2-208ENST00000477052 CCDC9Q9Y3X0 531 aaKnown RBP17.04■□□□□ 0.32
VARS2-208ENST00000477052 ABCA3Q99758 1704 aa17.04■□□□□ 0.32
VARS2-208ENST00000477052 HRCP23327 699 aa17.03■□□□□ 0.32
VARS2-208ENST00000477052 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.03■□□□□ 0.32
VARS2-208ENST00000477052 PLCH1Q4KWH8 1693 aa17.02■□□□□ 0.32
VARS2-208ENST00000477052 PAK3O75914 559 aaPredicted RBP17.02■□□□□ 0.32
VARS2-208ENST00000477052 EP400Q96L91 3159 aa17.02■□□□□ 0.31
VARS2-208ENST00000477052 ARHGEF10O15013 1369 aa17.02■□□□□ 0.31
VARS2-208ENST00000477052 TRPM3Q9HCF6 1732 aaPredicted RBP17.01■□□□□ 0.31
VARS2-208ENST00000477052 TULP4Q9NRJ4 1543 aa17.01■□□□□ 0.31
VARS2-208ENST00000477052 SEPT12Q8IYM1 358 aa17.01■□□□□ 0.31
VARS2-208ENST00000477052 NGDNQ8NEJ9 315 aaKnown RBP17.01■□□□□ 0.31
VARS2-208ENST00000477052 ARHGEF28Q8N1W1 1705 aaKnown RBP17.01■□□□□ 0.31
VARS2-208ENST00000477052 VPS72Q15906 364 aa17■□□□□ 0.31
VARS2-208ENST00000477052 BRWD3Q6RI45 1802 aa17■□□□□ 0.31
VARS2-208ENST00000477052 GPRASP1Q5JY77 1395 aa17■□□□□ 0.31
VARS2-208ENST00000477052 NBPF1Q3BBV0 1214 aa16.99■□□□□ 0.31
VARS2-208ENST00000477052 NUDT16Q96DE0 195 aaKnown RBP16.99■□□□□ 0.31
VARS2-208ENST00000477052 ALS2Q96Q42 1657 aa16.97■□□□□ 0.31
VARS2-208ENST00000477052 NUTM2GQ5VZR2 741 aa16.97■□□□□ 0.31
VARS2-208ENST00000477052 CDK19Q9BWU1 502 aa16.97■□□□□ 0.31
VARS2-208ENST00000477052 BTG4Q9NY30 223 aa16.97■□□□□ 0.31
VARS2-208ENST00000477052 A0A0G2JS52 829 aa16.96■□□□□ 0.31
VARS2-208ENST00000477052 MYT1Q01538 1121 aa16.96■□□□□ 0.31
VARS2-208ENST00000477052 STAC3Q96MF2 364 aa16.96■□□□□ 0.31
VARS2-208ENST00000477052 EIF3AQ14152 1382 aaKnown RBP16.96■□□□□ 0.31
VARS2-208ENST00000477052 ATP7BP35670 1465 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms