RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 ATP6V1AP38606 617 aa11.51□□□□□ -0.57
VPS50-212ENST00000476413 MTMR2Q13614 643 aa11.51□□□□□ -0.57
VPS50-212ENST00000476413 GJD4Q96KN9 370 aaPredicted RBP11.51□□□□□ -0.57
VPS50-212ENST00000476413 GDPD2Q9HCC8 539 aa11.51□□□□□ -0.57
VPS50-212ENST00000476413 CFAP99D6REC4 459 aa11.5□□□□□ -0.57
VPS50-212ENST00000476413 ZNF777Q9ULD5 760 aaPredicted RBP11.5□□□□□ -0.57
VPS50-212ENST00000476413 CTDSPL2Q05D32 466 aa11.49□□□□□ -0.57
VPS50-212ENST00000476413 CCDC82Q8N4S0 544 aa11.49□□□□□ -0.57
VPS50-212ENST00000476413 HMX1Q9NP08 348 aaPredicted RBP11.49□□□□□ -0.57
VPS50-212ENST00000476413 TBC1D2BQ9UPU7 963 aa11.49□□□□□ -0.57
VPS50-212ENST00000476413 GRIPAP1Q4V328 841 aa11.48□□□□□ -0.57
VPS50-212ENST00000476413 LRCH3Q96II8 777 aa11.48□□□□□ -0.57
VPS50-212ENST00000476413 ACTN4O43707 911 aaKnown RBP11.47□□□□□ -0.57
VPS50-212ENST00000476413 GPR37L1O60883 481 aa11.47□□□□□ -0.57
VPS50-212ENST00000476413 MORN1Q5T089 497 aa11.47□□□□□ -0.57
VPS50-212ENST00000476413 SYMPKQ92797 1274 aaKnown RBP11.47□□□□□ -0.57
VPS50-212ENST00000476413 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.47□□□□□ -0.57
VPS50-212ENST00000476413 KMT5BQ4FZB7 885 aa11.46□□□□□ -0.57
VPS50-212ENST00000476413 TRIM34Q9BYJ4 488 aa11.46□□□□□ -0.57
VPS50-212ENST00000476413 C6orf229H3BNL8 230 aa11.45□□□□□ -0.58
VPS50-212ENST00000476413 PUS10Q3MIT2 529 aaKnown RBP11.45□□□□□ -0.58
VPS50-212ENST00000476413 LRRN4Q8WUT4 740 aa11.44□□□□□ -0.58
VPS50-212ENST00000476413 SLC27A5Q9Y2P5 690 aa11.44□□□□□ -0.58
VPS50-212ENST00000476413 SOWAHBA6NEL2 793 aa11.43□□□□□ -0.58
VPS50-212ENST00000476413 NECTIN2Q92692 538 aa11.43□□□□□ -0.58
VPS50-212ENST00000476413 ZNF330Q9Y3S2 320 aaPredicted RBP11.43□□□□□ -0.58
VPS50-212ENST00000476413 ABL2P42684 1182 aa11.42□□□□□ -0.58
VPS50-212ENST00000476413 IRF5Q13568 498 aa11.42□□□□□ -0.58
VPS50-212ENST00000476413 PRR7Q8TB68 274 aa11.42□□□□□ -0.58
VPS50-212ENST00000476413 BCAMP50895 628 aa11.41□□□□□ -0.58
VPS50-212ENST00000476413 ANKRD13DQ6ZTN6 518 aa11.41□□□□□ -0.58
VPS50-212ENST00000476413 ANKK1Q8NFD2 765 aa11.41□□□□□ -0.58
VPS50-212ENST00000476413 HELBQ8NG08 1087 aaPredicted RBP11.41□□□□□ -0.58
VPS50-212ENST00000476413 APLP1P51693 650 aa11.4□□□□□ -0.58
VPS50-212ENST00000476413 NDUFB9Q9Y6M9 179 aa11.4□□□□□ -0.58
VPS50-212ENST00000476413 POM121CA8CG34 1229 aa11.39□□□□□ -0.59
VPS50-212ENST00000476413 PER1O15534 1290 aaPredicted RBP11.39□□□□□ -0.59
VPS50-212ENST00000476413 RNF19BQ6ZMZ0 732 aa11.39□□□□□ -0.59
VPS50-212ENST00000476413 RETREG3Q86VR2 466 aa11.39□□□□□ -0.59
VPS50-212ENST00000476413 EPS8L1Q8TE68 723 aa11.39□□□□□ -0.59
VPS50-212ENST00000476413 TSC1Q92574 1164 aa11.39□□□□□ -0.59
VPS50-212ENST00000476413 HPS5Q9UPZ3 1129 aa11.39□□□□□ -0.59
VPS50-212ENST00000476413 BLOC1S3Q6QNY0 202 aa11.38□□□□□ -0.59
VPS50-212ENST00000476413 PRR14Q9BWN1 585 aa11.38□□□□□ -0.59
VPS50-212ENST00000476413 KRTAP3-3Q9BYR6 98 aa11.38□□□□□ -0.59
VPS50-212ENST00000476413 KRTAP3-2Q9BYR7 98 aa11.38□□□□□ -0.59
VPS50-212ENST00000476413 PRM3Q9NNZ6 103 aa11.37□□□□□ -0.59
VPS50-212ENST00000476413 PPP4CP60510 307 aa11.36□□□□□ -0.59
VPS50-212ENST00000476413 Q3C1V9 767 aa11.36□□□□□ -0.59
VPS50-212ENST00000476413 TSR3Q9UJK0 312 aaKnown RBP11.36□□□□□ -0.59
VPS50-212ENST00000476413 DESI1Q6ICB0 168 aa11.35□□□□□ -0.59
VPS50-212ENST00000476413 WNT2BQ93097 391 aa11.35□□□□□ -0.59
VPS50-212ENST00000476413 THAP11Q96EK4 314 aa11.35□□□□□ -0.59
VPS50-212ENST00000476413 GOLGA8CPA6NN73 597 aa11.34□□□□□ -0.59
VPS50-212ENST00000476413 BRICD5Q6PL45 260 aa11.34□□□□□ -0.59
VPS50-212ENST00000476413 CDAN1Q8IWY9 1227 aa11.34□□□□□ -0.59
VPS50-212ENST00000476413 SERPINA10Q9UK55 444 aa11.34□□□□□ -0.59
VPS50-212ENST00000476413 SALL2Q9Y467 1007 aaPredicted RBP11.34□□□□□ -0.59
VPS50-212ENST00000476413 SCUBE3Q8IX30 993 aa11.33□□□□□ -0.6
VPS50-212ENST00000476413 NR6A1Q15406 480 aa11.32□□□□□ -0.6
VPS50-212ENST00000476413 WWC1Q8IX03 1113 aa11.32□□□□□ -0.6
VPS50-212ENST00000476413 ADAMTS19Q8TE59 1207 aa11.32□□□□□ -0.6
VPS50-212ENST00000476413 CCDC97Q96F63 343 aaPredicted RBP11.32□□□□□ -0.6
VPS50-212ENST00000476413 STAC3Q96MF2 364 aa11.32□□□□□ -0.6
VPS50-212ENST00000476413 WBP1LQ9NX94 342 aa11.32□□□□□ -0.6
VPS50-212ENST00000476413 LYPD8Q6UX82 237 aa11.31□□□□□ -0.6
VPS50-212ENST00000476413 GLMNQ92990 594 aa11.31□□□□□ -0.6
VPS50-212ENST00000476413 USB1Q9BQ65 265 aaKnown RBP11.31□□□□□ -0.6
VPS50-212ENST00000476413 PCDHB3Q9Y5E6 796 aa11.31□□□□□ -0.6
VPS50-212ENST00000476413 THSD4Q6ZMP0 1018 aa11.28□□□□□ -0.6
VPS50-212ENST00000476413 CALR3Q96L12 384 aaKnown RBP11.28□□□□□ -0.6
VPS50-212ENST00000476413 NR1I2O75469 434 aa11.27□□□□□ -0.61
VPS50-212ENST00000476413 VAC14Q08AM6 782 aa11.27□□□□□ -0.61
VPS50-212ENST00000476413 WASHC4Q2M389 1173 aa11.27□□□□□ -0.61
VPS50-212ENST00000476413 FMNL1O95466 1100 aaPredicted RBP11.26□□□□□ -0.61
VPS50-212ENST00000476413 F12P00748 615 aaPredicted RBP11.25□□□□□ -0.61
VPS50-212ENST00000476413 HDGFL1Q5TGJ6 251 aa11.24□□□□□ -0.61
VPS50-212ENST00000476413 ALG2Q9H553 416 aa11.24□□□□□ -0.61
VPS50-212ENST00000476413 JUNDP17535 347 aa11.23□□□□□ -0.61
VPS50-212ENST00000476413 FAM160A2Q8N612 972 aaPredicted RBP11.23□□□□□ -0.61
VPS50-212ENST00000476413 MSS51Q4VC12 460 aa11.22□□□□□ -0.61
VPS50-212ENST00000476413 PTPRNQ16849 979 aa11.21□□□□□ -0.61
VPS50-212ENST00000476413 MAP10Q9P2G4 905 aa11.21□□□□□ -0.61
VPS50-212ENST00000476413 DXOO77932 396 aaKnown RBP11.2□□□□□ -0.62
VPS50-212ENST00000476413 COPS2P61201 443 aa11.2□□□□□ -0.62
VPS50-212ENST00000476413 KCTD12Q96CX2 325 aaKnown RBP11.2□□□□□ -0.62
VPS50-212ENST00000476413 SPSB2Q99619 263 aa11.19□□□□□ -0.62
VPS50-212ENST00000476413 PRDM9Q9NQV7 894 aa11.19□□□□□ -0.62
VPS50-212ENST00000476413 MMP16P51512 607 aa11.18□□□□□ -0.62
VPS50-212ENST00000476413 TLL1O43897 1013 aa11.17□□□□□ -0.62
VPS50-212ENST00000476413 UCN2Q96RP3 112 aa11.17□□□□□ -0.62
VPS50-212ENST00000476413 FKBPLQ9UIM3 349 aa11.17□□□□□ -0.62
VPS50-212ENST00000476413 CFAP70Q5T0N1 1121 aa11.16□□□□□ -0.62
VPS50-212ENST00000476413 NYAP1Q6ZVC0 841 aa11.16□□□□□ -0.62
VPS50-212ENST00000476413 ZPR1O75312 459 aa11.15□□□□□ -0.62
VPS50-212ENST00000476413 FBXO45P0C2W1 286 aa11.15□□□□□ -0.62
VPS50-212ENST00000476413 MTRQ99707 1265 aa11.15□□□□□ -0.62
VPS50-212ENST00000476413 CCNYL3P0C7X3 344 aa11.14□□□□□ -0.63
VPS50-212ENST00000476413 SOX11P35716 441 aa11.14□□□□□ -0.63
VPS50-212ENST00000476413 SRPK2P78362 688 aaKnown RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms