RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 PLA2G2CQ5R387 149 aa10.88□□□□□ -0.67
PTCD3-211ENST00000476215 DXOO77932 396 aaKnown RBP10.87□□□□□ -0.67
PTCD3-211ENST00000476215 FDX1P10109 184 aa10.87□□□□□ -0.67
PTCD3-211ENST00000476215 PRDM9Q9NQV7 894 aa10.87□□□□□ -0.67
PTCD3-211ENST00000476215 PCDHGC3Q9UN70 934 aa10.87□□□□□ -0.67
PTCD3-211ENST00000476215 MOXD2PA6NHM9 499 aa10.86□□□□□ -0.67
PTCD3-211ENST00000476215 SLC19A1P41440 591 aa10.86□□□□□ -0.67
PTCD3-211ENST00000476215 LIAT1Q6ZQX7 453 aa10.86□□□□□ -0.67
PTCD3-211ENST00000476215 TBC1D2Q9BYX2 928 aa10.86□□□□□ -0.67
PTCD3-211ENST00000476215 BRPF1P55201 1214 aaPredicted RBP10.85□□□□□ -0.67
PTCD3-211ENST00000476215 NEUROD2Q15784 382 aa10.85□□□□□ -0.67
PTCD3-211ENST00000476215 SPRYD7Q5W111 196 aa10.85□□□□□ -0.67
PTCD3-211ENST00000476215 RETREG3Q86VR2 466 aa10.85□□□□□ -0.67
PTCD3-211ENST00000476215 SPTLC1O15269 473 aa10.83□□□□□ -0.68
PTCD3-211ENST00000476215 RPIAP49247 311 aa10.83□□□□□ -0.68
PTCD3-211ENST00000476215 LAPTM4AQ15012 233 aa10.83□□□□□ -0.68
PTCD3-211ENST00000476215 RSBN1LQ6PCB5 846 aaPredicted RBP10.83□□□□□ -0.68
PTCD3-211ENST00000476215 FCF1Q9Y324 198 aaKnown RBP10.83□□□□□ -0.68
PTCD3-211ENST00000476215 NDUFV2P19404 249 aa10.82□□□□□ -0.68
PTCD3-211ENST00000476215 TUSC1Q2TAM9 212 aa10.82□□□□□ -0.68
PTCD3-211ENST00000476215 ZNF598Q86UK7 904 aaKnown RBP10.82□□□□□ -0.68
PTCD3-211ENST00000476215 JUNDP17535 347 aa10.8□□□□□ -0.68
PTCD3-211ENST00000476215 TRIM67Q6ZTA4 783 aa10.8□□□□□ -0.68
PTCD3-211ENST00000476215 SPDYE5A6NIY4 337 aa10.79□□□□□ -0.68
PTCD3-211ENST00000476215 PRR20EP86478 221 aa10.79□□□□□ -0.68
PTCD3-211ENST00000476215 PRR20CP86479 221 aa10.79□□□□□ -0.68
PTCD3-211ENST00000476215 PRR20DP86480 221 aa10.79□□□□□ -0.68
PTCD3-211ENST00000476215 PRR20BP86481 221 aa10.79□□□□□ -0.68
PTCD3-211ENST00000476215 PRR20AP86496 221 aa10.79□□□□□ -0.68
PTCD3-211ENST00000476215 SYMPKQ92797 1274 aaKnown RBP10.79□□□□□ -0.68
PTCD3-211ENST00000476215 NRG2O14511 850 aaPredicted RBP10.78□□□□□ -0.68
PTCD3-211ENST00000476215 MYSM1Q5VVJ2 828 aa10.78□□□□□ -0.68
PTCD3-211ENST00000476215 GPBP1L1Q9HC44 474 aaPredicted RBP10.78□□□□□ -0.68
PTCD3-211ENST00000476215 PRPF38BQ5VTL8 546 aaKnown RBP10.77□□□□□ -0.69
PTCD3-211ENST00000476215 DESI1Q6ICB0 168 aa10.77□□□□□ -0.69
PTCD3-211ENST00000476215 MTMR2Q13614 643 aa10.76□□□□□ -0.69
PTCD3-211ENST00000476215 KDM4CQ9H3R0 1056 aa10.76□□□□□ -0.69
PTCD3-211ENST00000476215 C6orf229H3BNL8 230 aa10.75□□□□□ -0.69
PTCD3-211ENST00000476215 GDF9O60383 454 aa10.75□□□□□ -0.69
PTCD3-211ENST00000476215 ZNF697Q5TEC3 545 aa10.75□□□□□ -0.69
PTCD3-211ENST00000476215 RIC3Q7Z5B4 369 aa10.75□□□□□ -0.69
PTCD3-211ENST00000476215 PCDHB15Q9Y5E8 787 aa10.75□□□□□ -0.69
PTCD3-211ENST00000476215 GFRA3O60609 400 aa10.74□□□□□ -0.69
PTCD3-211ENST00000476215 LIMD1Q9UGP4 676 aa10.73□□□□□ -0.69
PTCD3-211ENST00000476215 RSPH6AQ9H0K4 717 aa10.72□□□□□ -0.69
PTCD3-211ENST00000476215 PDZRN3Q9UPQ7 1066 aa10.72□□□□□ -0.69
PTCD3-211ENST00000476215 CD2BP2O95400 341 aaKnown RBP10.71□□□□□ -0.69
PTCD3-211ENST00000476215 HRCP23327 699 aa10.71□□□□□ -0.69
PTCD3-211ENST00000476215 PTPRNQ16849 979 aa10.71□□□□□ -0.69
PTCD3-211ENST00000476215 PRR7Q8TB68 274 aa10.71□□□□□ -0.69
PTCD3-211ENST00000476215 DDRGK1Q96HY6 314 aa10.71□□□□□ -0.69
PTCD3-211ENST00000476215 ZBTB3Q9H5J0 574 aa10.71□□□□□ -0.69
PTCD3-211ENST00000476215 PKD2L1Q9P0L9 805 aa10.71□□□□□ -0.69
PTCD3-211ENST00000476215 LILRB3O75022 631 aa10.7□□□□□ -0.7
PTCD3-211ENST00000476215 PLEKHG3A1L390 1219 aa10.69□□□□□ -0.7
PTCD3-211ENST00000476215 TRIM32Q13049 653 aa10.69□□□□□ -0.7
PTCD3-211ENST00000476215 NUDT12Q9BQG2 462 aa10.69□□□□□ -0.7
PTCD3-211ENST00000476215 FAM117AQ9C073 453 aa10.69□□□□□ -0.7
PTCD3-211ENST00000476215 CFAP99D6REC4 459 aa10.68□□□□□ -0.7
PTCD3-211ENST00000476215 ZBTB24O43167 697 aaPredicted RBP10.68□□□□□ -0.7
PTCD3-211ENST00000476215 CLK2P49760 499 aaKnown RBP10.68□□□□□ -0.7
PTCD3-211ENST00000476215 SH3D19Q5HYK7 790 aa10.68□□□□□ -0.7
PTCD3-211ENST00000476215 LCE2BO14633 110 aa10.67□□□□□ -0.7
PTCD3-211ENST00000476215 CCNYL3P0C7X3 344 aa10.67□□□□□ -0.7
PTCD3-211ENST00000476215 TMEM132AQ24JP5 1023 aa10.66□□□□□ -0.7
PTCD3-211ENST00000476215 LYPD8Q6UX82 237 aa10.66□□□□□ -0.7
PTCD3-211ENST00000476215 EVA1BQ9NVM1 165 aa10.66□□□□□ -0.7
PTCD3-211ENST00000476215 SKIV2LQ15477 1246 aaKnown RBP10.65□□□□□ -0.7
PTCD3-211ENST00000476215 QPCTQ16769 361 aa10.65□□□□□ -0.7
PTCD3-211ENST00000476215 CABLES1Q8TDN4 633 aa10.65□□□□□ -0.7
PTCD3-211ENST00000476215 WNT7AO00755 349 aa10.64□□□□□ -0.71
PTCD3-211ENST00000476215 WNT7BP56706 349 aa10.64□□□□□ -0.71
PTCD3-211ENST00000476215 PTCRAQ6ISU1 281 aaPredicted RBP10.64□□□□□ -0.71
PTCD3-211ENST00000476215 Q6ZNB5 142 aa10.64□□□□□ -0.71
PTCD3-211ENST00000476215 IL27Q8NEV9 243 aa10.64□□□□□ -0.71
PTCD3-211ENST00000476215 CCDC24Q8N4L8 307 aa10.63□□□□□ -0.71
PTCD3-211ENST00000476215 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.63□□□□□ -0.71
PTCD3-211ENST00000476215 TOR4AQ9NXH8 423 aa10.63□□□□□ -0.71
PTCD3-211ENST00000476215 F12P00748 615 aaPredicted RBP10.62□□□□□ -0.71
PTCD3-211ENST00000476215 KCNH2Q12809 1159 aa10.62□□□□□ -0.71
PTCD3-211ENST00000476215 GOPCQ9HD26 462 aa10.62□□□□□ -0.71
PTCD3-211ENST00000476215 TNFRSF10AO00220 468 aa10.61□□□□□ -0.71
PTCD3-211ENST00000476215 DGAT1O75907 488 aa10.61□□□□□ -0.71
PTCD3-211ENST00000476215 SKOR1P84550 965 aa10.61□□□□□ -0.71
PTCD3-211ENST00000476215 CSPP1Q1MSJ5 1256 aa10.6□□□□□ -0.71
PTCD3-211ENST00000476215 RTL5Q5HYW3 569 aaPredicted RBP10.6□□□□□ -0.71
PTCD3-211ENST00000476215 PPP2R2DQ66LE6 453 aa10.6□□□□□ -0.71
PTCD3-211ENST00000476215 TRAF7Q6Q0C0 670 aa10.59□□□□□ -0.71
PTCD3-211ENST00000476215 POLR3EQ9NVU0 708 aa10.59□□□□□ -0.71
PTCD3-211ENST00000476215 FOXC1Q12948 553 aa10.58□□□□□ -0.72
PTCD3-211ENST00000476215 UNC93B1Q9H1C4 597 aa10.58□□□□□ -0.72
PTCD3-211ENST00000476215 NUTM2BA6NNL0 878 aaPredicted RBP10.56□□□□□ -0.72
PTCD3-211ENST00000476215 NUTM2EB1AL46 878 aaPredicted RBP10.56□□□□□ -0.72
PTCD3-211ENST00000476215 NUTM2DQ5VT03 806 aaPredicted RBP10.56□□□□□ -0.72
PTCD3-211ENST00000476215 FBXO31Q5XUX0 539 aaPredicted RBP10.56□□□□□ -0.72
PTCD3-211ENST00000476215 NUTM2AQ8IVF1 878 aaPredicted RBP10.56□□□□□ -0.72
PTCD3-211ENST00000476215 PER1O15534 1290 aaPredicted RBP10.55□□□□□ -0.72
PTCD3-211ENST00000476215 AVPP01185 164 aa10.55□□□□□ -0.72
PTCD3-211ENST00000476215 RC3H1Q5TC82 1133 aaKnown RBP10.55□□□□□ -0.72
PTCD3-211ENST00000476215 MRGPRX2Q96LB1 330 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms