RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 FNBP4Q8N3X1 1017 aaPredicted RBP19.06■□□□□ 0.64
SKA3-206ENST00000475251 COL22A1Q8NFW1 1626 aaPredicted RBP19.06■□□□□ 0.64
SKA3-206ENST00000475251 NPHP3Q7Z494 1330 aa19.04■□□□□ 0.64
SKA3-206ENST00000475251 NAIPQ13075 1403 aa19.04■□□□□ 0.64
SKA3-206ENST00000475251 CDC42BPGQ6DT37 1551 aa19.02■□□□□ 0.63
SKA3-206ENST00000475251 ATRNO75882 1429 aa19.01■□□□□ 0.63
SKA3-206ENST00000475251 RRBP1Q9P2E9 1410 aaKnown RBP19.01■□□□□ 0.63
SKA3-206ENST00000475251 LRPPRCP42704 1394 aaKnown RBP19.01■□□□□ 0.63
SKA3-206ENST00000475251 PPLO60437 1756 aa19.01■□□□□ 0.63
SKA3-206ENST00000475251 ESCO1Q5FWF5 840 aa19■□□□□ 0.63
SKA3-206ENST00000475251 PPARGC1BQ86YN6 1023 aaKnown RBP19■□□□□ 0.63
SKA3-206ENST00000475251 CCDC125Q86Z20 511 aa19■□□□□ 0.63
SKA3-206ENST00000475251 MYOM2P54296 1465 aa19■□□□□ 0.63
SKA3-206ENST00000475251 ZRANB1Q9UGI0 708 aa18.99■□□□□ 0.63
SKA3-206ENST00000475251 SLC4A1APQ9BWU0 796 aaKnown RBP18.98■□□□□ 0.63
SKA3-206ENST00000475251 MARF1Q9Y4F3 1742 aaKnown RBP18.97■□□□□ 0.63
SKA3-206ENST00000475251 PXDNQ92626 1479 aa18.97■□□□□ 0.63
SKA3-206ENST00000475251 BCL9LQ86UU0 1499 aa18.95■□□□□ 0.62
SKA3-206ENST00000475251 TECPR2O15040 1411 aa18.93■□□□□ 0.62
SKA3-206ENST00000475251 FOXO3O43524 673 aa18.93■□□□□ 0.62
SKA3-206ENST00000475251 GJD4Q96KN9 370 aaPredicted RBP18.93■□□□□ 0.62
SKA3-206ENST00000475251 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.91■□□□□ 0.62
SKA3-206ENST00000475251 ANKRD30BQ9BXX2 1392 aa18.91■□□□□ 0.62
SKA3-206ENST00000475251 CCDC144AA2RUR9 1427 aa18.91■□□□□ 0.62
SKA3-206ENST00000475251 KIF1AQ12756 1690 aa18.89■□□□□ 0.61
SKA3-206ENST00000475251 XPCQ01831 940 aaPredicted RBP18.89■□□□□ 0.61
SKA3-206ENST00000475251 ABCC11Q96J66 1382 aa18.89■□□□□ 0.61
SKA3-206ENST00000475251 KNDC1Q76NI1 1749 aa18.88■□□□□ 0.61
SKA3-206ENST00000475251 UNC5CLQ8IV45 518 aa18.88■□□□□ 0.61
SKA3-206ENST00000475251 STK26Q9P289 416 aa18.88■□□□□ 0.61
SKA3-206ENST00000475251 ADGRF5Q8IZF2 1346 aa18.88■□□□□ 0.61
SKA3-206ENST00000475251 SLIT2O94813 1529 aa18.86■□□□□ 0.61
SKA3-206ENST00000475251 SPATA31A3Q5VYP0 1347 aa18.86■□□□□ 0.61
SKA3-206ENST00000475251 NUTM2FA1L443 756 aa18.86■□□□□ 0.61
SKA3-206ENST00000475251 WAPLQ7Z5K2 1190 aa18.86■□□□□ 0.61
SKA3-206ENST00000475251 EP400Q96L91 3159 aa18.86■□□□□ 0.61
SKA3-206ENST00000475251 FMN2Q9NZ56 1722 aa18.86■□□□□ 0.61
SKA3-206ENST00000475251 BLMP54132 1417 aaPredicted RBP18.85■□□□□ 0.61
SKA3-206ENST00000475251 RGL3Q3MIN7 710 aa18.85■□□□□ 0.61
SKA3-206ENST00000475251 RALGAPBQ86X10 1494 aa18.84■□□□□ 0.61
SKA3-206ENST00000475251 SRCAPQ6ZRS2 3230 aa18.84■□□□□ 0.61
SKA3-206ENST00000475251 IFT172Q9UG01 1749 aa18.84■□□□□ 0.61
SKA3-206ENST00000475251 HAP1P54257 671 aaPredicted RBP18.84■□□□□ 0.61
SKA3-206ENST00000475251 USP32Q8NFA0 1604 aa18.84■□□□□ 0.61
SKA3-206ENST00000475251 PIK3C2GO75747 1445 aa18.83■□□□□ 0.61
SKA3-206ENST00000475251 SPATA31E1Q6ZUB1 1445 aa18.83■□□□□ 0.61
SKA3-206ENST00000475251 PSME1Q06323 249 aa18.83■□□□□ 0.6
SKA3-206ENST00000475251 SF3B2Q13435 895 aaKnown RBP18.83■□□□□ 0.6
SKA3-206ENST00000475251 GLI3P10071 1580 aa18.82■□□□□ 0.6
SKA3-206ENST00000475251 KRT28Q7Z3Y7 464 aa18.82■□□□□ 0.6
SKA3-206ENST00000475251 SIRT1Q96EB6 747 aa18.82■□□□□ 0.6
SKA3-206ENST00000475251 YTHDC2Q9H6S0 1430 aaKnown RBP18.82■□□□□ 0.6
SKA3-206ENST00000475251 PLEKHH1Q9ULM0 1364 aa18.81■□□□□ 0.6
SKA3-206ENST00000475251 MAPK8IP2Q13387 824 aaPredicted RBP18.81■□□□□ 0.6
SKA3-206ENST00000475251 TMEM132EQ6IEE7 984 aa18.81■□□□□ 0.6
SKA3-206ENST00000475251 TNS3Q68CZ2 1445 aa18.81■□□□□ 0.6
SKA3-206ENST00000475251 VPS72Q15906 364 aa18.78■□□□□ 0.6
SKA3-206ENST00000475251 PHF8Q9UPP1 1060 aa18.78■□□□□ 0.6
SKA3-206ENST00000475251 NWD2Q9ULI1 1742 aa18.77■□□□□ 0.6
SKA3-206ENST00000475251 ACIN1Q9UKV3 1341 aaKnown RBP18.77■□□□□ 0.6
SKA3-206ENST00000475251 SEPT12Q8IYM1 358 aa18.77■□□□□ 0.6
SKA3-206ENST00000475251 MPHOSPH9Q99550 1183 aa18.77■□□□□ 0.6
SKA3-206ENST00000475251 SBNO1A3KN83 1393 aa18.77■□□□□ 0.6
SKA3-206ENST00000475251 ARHGEF10O15013 1369 aa18.77■□□□□ 0.6
SKA3-206ENST00000475251 DHX57Q6P158 1386 aaKnown RBP18.76■□□□□ 0.59
SKA3-206ENST00000475251 BRWD3Q6RI45 1802 aa18.75■□□□□ 0.59
SKA3-206ENST00000475251 CCDC9Q9Y3X0 531 aaKnown RBP18.75■□□□□ 0.59
SKA3-206ENST00000475251 NRXN1Q9ULB1 1477 aa18.75■□□□□ 0.59
SKA3-206ENST00000475251 PLCH1Q4KWH8 1693 aa18.75■□□□□ 0.59
SKA3-206ENST00000475251 ONECUT3O60422 494 aaPredicted RBP18.74■□□□□ 0.59
SKA3-206ENST00000475251 C14orf93Q9H972 538 aaKnown RBP18.74■□□□□ 0.59
SKA3-206ENST00000475251 LMOD2Q6P5Q4 547 aa18.73■□□□□ 0.59
SKA3-206ENST00000475251 KRT27Q7Z3Y8 459 aa18.73■□□□□ 0.59
SKA3-206ENST00000475251 RGPD8O14715 1765 aaPredicted RBP18.73■□□□□ 0.59
SKA3-206ENST00000475251 DEFB132Q7Z7B7 95 aa18.72■□□□□ 0.59
SKA3-206ENST00000475251 CABLES1Q8TDN4 633 aa18.71■□□□□ 0.59
SKA3-206ENST00000475251 ANKARQ7Z5J8 1434 aa18.71■□□□□ 0.59
SKA3-206ENST00000475251 ABCA3Q99758 1704 aa18.71■□□□□ 0.59
SKA3-206ENST00000475251 A0A0G2JS52 829 aa18.69■□□□□ 0.58
SKA3-206ENST00000475251 BAG6P46379 1132 aa18.69■□□□□ 0.58
SKA3-206ENST00000475251 MYT1Q01538 1121 aa18.69■□□□□ 0.58
SKA3-206ENST00000475251 PRAM1Q96QH2 718 aa18.69■□□□□ 0.58
SKA3-206ENST00000475251 POGKQ9P215 609 aa18.69■□□□□ 0.58
SKA3-206ENST00000475251 LRP5O75197 1615 aa18.69■□□□□ 0.58
SKA3-206ENST00000475251 DLC1Q96QB1 1528 aa18.69■□□□□ 0.58
SKA3-206ENST00000475251 PLEKHG5O94827 1062 aa18.68■□□□□ 0.58
SKA3-206ENST00000475251 CFAP70Q5T0N1 1121 aa18.68■□□□□ 0.58
SKA3-206ENST00000475251 EIF3AQ14152 1382 aaKnown RBP18.68■□□□□ 0.58
SKA3-206ENST00000475251 FAM83GA6ND36 823 aa18.66■□□□□ 0.58
SKA3-206ENST00000475251 SAFB2Q14151 953 aaKnown RBP eCLIP18.66■□□□□ 0.58
SKA3-206ENST00000475251 ADGRB2O60241 1585 aa18.66■□□□□ 0.58
SKA3-206ENST00000475251 GPRASP1Q5JY77 1395 aa18.66■□□□□ 0.58
SKA3-206ENST00000475251 PMFBP1Q8TBY8 1022 aa18.65■□□□□ 0.58
SKA3-206ENST00000475251 NRAPQ86VF7 1730 aa18.64■□□□□ 0.57
SKA3-206ENST00000475251 COL14A1Q05707 1796 aaKnown RBP18.64■□□□□ 0.57
SKA3-206ENST00000475251 BTG4Q9NY30 223 aa18.63■□□□□ 0.57
SKA3-206ENST00000475251 FAM98CQ17RN3 349 aaKnown RBP18.62■□□□□ 0.57
SKA3-206ENST00000475251 TRPM3Q9HCF6 1732 aaPredicted RBP18.62■□□□□ 0.57
SKA3-206ENST00000475251 RGPD1P0DJD0 1748 aa18.6■□□□□ 0.57
SKA3-206ENST00000475251 ALS2Q96Q42 1657 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 163.7 ms