RNA–Protein interactions for RNA: ENST00000474319.1

LSS-208, Transcript of lanosterol synthase, human

TSL 2

Gene LSS, Length 3,601 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSS-208	ENST00000474319	SOX12	O15370	315 aa		13.73	□□□□□ -0.21
LSS-208	ENST00000474319	FBLN1	P23142	703 aa		13.73	□□□□□ -0.21
LSS-208	ENST00000474319	RBM33	Q96EV2	1170 aa	Known RBP	13.73	□□□□□ -0.21
LSS-208	ENST00000474319	CABP2	Q9NPB3	220 aa		13.73	□□□□□ -0.21
LSS-208	ENST00000474319	ZNF521	Q96K83	1311 aa		13.73	□□□□□ -0.21
LSS-208	ENST00000474319	PDZRN3	Q9UPQ7	1066 aa		13.73	□□□□□ -0.21
LSS-208	ENST00000474319	TRPM1	Q7Z4N2	1603 aa		13.72	□□□□□ -0.21
LSS-208	ENST00000474319	SLC26A8	Q96RN1	970 aa		13.72	□□□□□ -0.21
LSS-208	ENST00000474319	UPF2	Q9HAU5	1272 aa	Known RBP	13.72	□□□□□ -0.21
LSS-208	ENST00000474319	ABCA9	Q8IUA7	1624 aa		13.72	□□□□□ -0.21
LSS-208	ENST00000474319	ITPRIP	Q8IWB1	547 aa		13.71	□□□□□ -0.21
LSS-208	ENST00000474319	VGF	O15240	615 aa	Predicted RBP	13.71	□□□□□ -0.22
LSS-208	ENST00000474319	ELL2	O00472	640 aa	Predicted RBP	13.7	□□□□□ -0.22
LSS-208	ENST00000474319	GGNBP2	Q9H3C7	697 aa		13.7	□□□□□ -0.22
LSS-208	ENST00000474319	NPAT	Q14207	1427 aa		13.7	□□□□□ -0.22
LSS-208	ENST00000474319	ATP10A	O60312	1499 aa		13.7	□□□□□ -0.22
LSS-208	ENST00000474319	WAPL	Q7Z5K2	1190 aa		13.7	□□□□□ -0.22
LSS-208	ENST00000474319	NKTR	P30414	1462 aa	Known RBP	13.69	□□□□□ -0.22
LSS-208	ENST00000474319	RARS	P54136	660 aa	Known RBP	13.69	□□□□□ -0.22
LSS-208	ENST00000474319	BECN1	Q14457	450 aa		13.69	□□□□□ -0.22
LSS-208	ENST00000474319	SMC4	Q9NTJ3	1288 aa		13.69	□□□□□ -0.22
LSS-208	ENST00000474319	CGNL1	Q0VF96	1302 aa		13.68	□□□□□ -0.22
LSS-208	ENST00000474319	TXNDC2	Q86VQ3	553 aa		13.68	□□□□□ -0.22
LSS-208	ENST00000474319	NSD3	Q9BZ95	1437 aa		13.67	□□□□□ -0.22
LSS-208	ENST00000474319	PRAM1	Q96QH2	718 aa		13.67	□□□□□ -0.22
LSS-208	ENST00000474319	USP19	O94966	1318 aa		13.67	□□□□□ -0.22
LSS-208	ENST00000474319	MAST1	Q9Y2H9	1570 aa		13.67	□□□□□ -0.22
LSS-208	ENST00000474319		E9PCH4	1651 aa		13.66	□□□□□ -0.22
LSS-208	ENST00000474319	PRDM15	P57071	1507 aa	Predicted RBP	13.66	□□□□□ -0.22
LSS-208	ENST00000474319	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.66	□□□□□ -0.22
LSS-208	ENST00000474319	EXOSC9	Q06265	439 aa	Known RBP	13.65	□□□□□ -0.22
LSS-208	ENST00000474319	RUNDC1	Q96C34	613 aa		13.65	□□□□□ -0.22
LSS-208	ENST00000474319	C1orf115	Q9H7X2	142 aa		13.65	□□□□□ -0.22
LSS-208	ENST00000474319	PODXL2	Q9NZ53	605 aa		13.65	□□□□□ -0.22
LSS-208	ENST00000474319	EIF3A	Q14152	1382 aa	Known RBP	13.65	□□□□□ -0.22
LSS-208	ENST00000474319	SCAF11	Q99590	1463 aa	Known RBP	13.65	□□□□□ -0.22
LSS-208	ENST00000474319	ASXL1	Q8IXJ9	1541 aa		13.65	□□□□□ -0.22
LSS-208	ENST00000474319	TBC1D2	Q9BYX2	928 aa		13.65	□□□□□ -0.22
LSS-208	ENST00000474319	CFAP53	Q96M91	514 aa		13.64	□□□□□ -0.23
LSS-208	ENST00000474319	LNPK	Q9C0E8	428 aa		13.64	□□□□□ -0.23
LSS-208	ENST00000474319	NEO1	Q92859	1461 aa		13.64	□□□□□ -0.23
LSS-208	ENST00000474319	TRMT2A	Q8IZ69	625 aa	Known RBP	13.63	□□□□□ -0.23
LSS-208	ENST00000474319	THUMPD2	Q9BTF0	503 aa	Known RBP	13.63	□□□□□ -0.23
LSS-208	ENST00000474319	PANK2	Q9BZ23	570 aa		13.63	□□□□□ -0.23
LSS-208	ENST00000474319	SLC52A1	Q9NWF4	448 aa		13.63	□□□□□ -0.23
LSS-208	ENST00000474319	PDE3A	Q14432	1141 aa		13.63	□□□□□ -0.23
LSS-208	ENST00000474319	APBB1	O00213	710 aa		13.62	□□□□□ -0.23
LSS-208	ENST00000474319	RWDD1	Q9H446	243 aa	Predicted RBP	13.62	□□□□□ -0.23
LSS-208	ENST00000474319	KIDINS220	Q9ULH0	1771 aa		13.62	□□□□□ -0.23
LSS-208	ENST00000474319	PLXNC1	O60486	1568 aa		13.62	□□□□□ -0.23
LSS-208	ENST00000474319	C14orf37	Q86TY3	774 aa		13.62	□□□□□ -0.23
LSS-208	ENST00000474319	MAPK8IP3	Q9UPT6	1336 aa		13.61	□□□□□ -0.23
LSS-208	ENST00000474319	MLH3	Q9UHC1	1453 aa		13.61	□□□□□ -0.23
LSS-208	ENST00000474319	HSP90AA1	P07900	732 aa	Known RBP	13.61	□□□□□ -0.23
LSS-208	ENST00000474319	DZIP1L	Q8IYY4	767 aa	Known RBP	13.61	□□□□□ -0.23
LSS-208	ENST00000474319	PMFBP1	Q8TBY8	1022 aa		13.61	□□□□□ -0.23
LSS-208	ENST00000474319	NCKAP5L	Q9HCH0	1330 aa		13.6	□□□□□ -0.23
LSS-208	ENST00000474319	ZBTB7C	A1YPR0	619 aa		13.6	□□□□□ -0.23
LSS-208	ENST00000474319	NOB1	Q9ULX3	412 aa	Known RBP	13.6	□□□□□ -0.23
LSS-208	ENST00000474319	HMOX1	P09601	288 aa		13.59	□□□□□ -0.23
LSS-208	ENST00000474319	ZKSCAN2	Q63HK3	967 aa		13.59	□□□□□ -0.23
LSS-208	ENST00000474319	SSH1	Q8WYL5	1049 aa		13.59	□□□□□ -0.23
LSS-208	ENST00000474319	HECW2	Q9P2P5	1572 aa		13.59	□□□□□ -0.23
LSS-208	ENST00000474319	C22orf23	Q9BZE7	217 aa		13.59	□□□□□ -0.23
LSS-208	ENST00000474319	ZMYM3	Q14202	1370 aa		13.58	□□□□□ -0.23
LSS-208	ENST00000474319	C14orf93	Q9H972	538 aa	Known RBP	13.58	□□□□□ -0.24
LSS-208	ENST00000474319	PIK3C2G	O75747	1445 aa		13.57	□□□□□ -0.24
LSS-208	ENST00000474319	TRIM27	P14373	513 aa		13.57	□□□□□ -0.24
LSS-208	ENST00000474319	RIPK4	P57078	832 aa		13.57	□□□□□ -0.24
LSS-208	ENST00000474319	MYH16	Q9H6N6	1097 aa		13.57	□□□□□ -0.24
LSS-208	ENST00000474319	MVP	Q14764	893 aa	Known RBP	13.57	□□□□□ -0.24
LSS-208	ENST00000474319	TMEM57	Q8N5G2	664 aa		13.57	□□□□□ -0.24
LSS-208	ENST00000474319	ARAP3	Q8WWN8	1544 aa		13.57	□□□□□ -0.24
LSS-208	ENST00000474319	ABCA6	Q8N139	1617 aa		13.56	□□□□□ -0.24
LSS-208	ENST00000474319	INO80	Q9ULG1	1556 aa	Predicted RBP	13.56	□□□□□ -0.24
LSS-208	ENST00000474319	INSR	P06213	1382 aa		13.56	□□□□□ -0.24
LSS-208	ENST00000474319	TPRN	Q4KMQ1	711 aa		13.56	□□□□□ -0.24
LSS-208	ENST00000474319	NAP1L5	Q96NT1	182 aa	Predicted RBP	13.56	□□□□□ -0.24
LSS-208	ENST00000474319	UNC13B	O14795	1591 aa		13.56	□□□□□ -0.24
LSS-208	ENST00000474319	IQGAP3	Q86VI3	1631 aa		13.56	□□□□□ -0.24
LSS-208	ENST00000474319	ERVK-7	P63135	1459 aa		13.56	□□□□□ -0.24
LSS-208	ENST00000474319	CLTCL1	P53675	1640 aa		13.56	□□□□□ -0.24
LSS-208	ENST00000474319	TBC1D32	Q96NH3	1257 aa		13.56	□□□□□ -0.24
LSS-208	ENST00000474319	RRAGD	Q9NQL2	400 aa	Predicted RBP	13.56	□□□□□ -0.24
LSS-208	ENST00000474319	CABP1	Q9NZU7	370 aa		13.55	□□□□□ -0.24
LSS-208	ENST00000474319	CEP152	O94986	1710 aa		13.55	□□□□□ -0.24
LSS-208	ENST00000474319	LMOD2	Q6P5Q4	547 aa		13.54	□□□□□ -0.24
LSS-208	ENST00000474319	EID1	Q9Y6B2	187 aa		13.54	□□□□□ -0.24
LSS-208	ENST00000474319	DIP2B	Q9P265	1576 aa		13.54	□□□□□ -0.24
LSS-208	ENST00000474319	ANKRD45	Q5TZF3	282 aa		13.54	□□□□□ -0.24
LSS-208	ENST00000474319	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.53	□□□□□ -0.24
LSS-208	ENST00000474319	EVC2	Q86UK5	1308 aa		13.53	□□□□□ -0.24
LSS-208	ENST00000474319	GOLGA6L3	A6NEY3	463 aa		13.53	□□□□□ -0.24
LSS-208	ENST00000474319	HSCB	Q8IWL3	235 aa		13.53	□□□□□ -0.24
LSS-208	ENST00000474319	PTPRT	O14522	1441 aa		13.53	□□□□□ -0.24
LSS-208	ENST00000474319	FRMPD1	Q5SYB0	1578 aa		13.53	□□□□□ -0.24
LSS-208	ENST00000474319	HSP90AB1	P08238	724 aa	Known RBP	13.53	□□□□□ -0.24
LSS-208	ENST00000474319	NUTM2G	Q5VZR2	741 aa		13.53	□□□□□ -0.24
LSS-208	ENST00000474319	RBM42	Q9BTD8	480 aa	Known RBP	13.53	□□□□□ -0.24
LSS-208	ENST00000474319	CDK19	Q9BWU1	502 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms