RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 KDM2AQ9Y2K7 1162 aa26.23■■□□□ 1.79
UPF3A-203ENST00000474056 ADGRB1O14514 1584 aa26.21■■□□□ 1.79
UPF3A-203ENST00000474056 DDX17Q92841 729 aaKnown RBP26.2■■□□□ 1.78
UPF3A-203ENST00000474056 FMN2Q9NZ56 1722 aa26.19■■□□□ 1.78
UPF3A-203ENST00000474056 ORAI2Q96SN7 254 aa26.18■■□□□ 1.78
UPF3A-203ENST00000474056 LRP6O75581 1613 aa26.17■■□□□ 1.78
UPF3A-203ENST00000474056 DLC1Q96QB1 1528 aa26.16■■□□□ 1.78
UPF3A-203ENST00000474056 SIRT1Q96EB6 747 aa26.15■■□□□ 1.78
UPF3A-203ENST00000474056 RGS17Q9UGC6 210 aaPredicted RBP26.15■■□□□ 1.78
UPF3A-203ENST00000474056 RGPD8O14715 1765 aaPredicted RBP26.15■■□□□ 1.78
UPF3A-203ENST00000474056 STAC3Q96MF2 364 aa26.14■■□□□ 1.78
UPF3A-203ENST00000474056 SPATA31A6Q5VVP1 1343 aa26.14■■□□□ 1.77
UPF3A-203ENST00000474056 SOCS7O14512 581 aa26.11■■□□□ 1.77
UPF3A-203ENST00000474056 NUTM2FA1L443 756 aa26.1■■□□□ 1.77
UPF3A-203ENST00000474056 PRAM1Q96QH2 718 aa26.1■■□□□ 1.77
UPF3A-203ENST00000474056 ARHGEF28Q8N1W1 1705 aaKnown RBP26.09■■□□□ 1.77
UPF3A-203ENST00000474056 KIAA1210Q9ULL0 1709 aa26.09■■□□□ 1.77
UPF3A-203ENST00000474056 SAFB2Q14151 953 aaKnown RBP eCLIP26.09■■□□□ 1.77
UPF3A-203ENST00000474056 LRRC59Q96AG4 307 aaKnown RBP26.09■■□□□ 1.77
UPF3A-203ENST00000474056 ESCO1Q5FWF5 840 aa26.08■■□□□ 1.77
UPF3A-203ENST00000474056 TRAK1Q9UPV9 953 aa26.08■■□□□ 1.77
UPF3A-203ENST00000474056 SOS2Q07890 1332 aaPredicted RBP26.07■■□□□ 1.76
UPF3A-203ENST00000474056 ADGRB2O60241 1585 aa26.07■■□□□ 1.76
UPF3A-203ENST00000474056 PNPLA6Q8IY17 1366 aa26.07■■□□□ 1.76
UPF3A-203ENST00000474056 KIF1AQ12756 1690 aa26.06■■□□□ 1.76
UPF3A-203ENST00000474056 POGKQ9P215 609 aa26.04■■□□□ 1.76
UPF3A-203ENST00000474056 NUTM2BA6NNL0 878 aaPredicted RBP26.03■■□□□ 1.76
UPF3A-203ENST00000474056 NUTM2EB1AL46 878 aaPredicted RBP26.03■■□□□ 1.76
UPF3A-203ENST00000474056 NUTM2AQ8IVF1 878 aaPredicted RBP26.03■■□□□ 1.76
UPF3A-203ENST00000474056 PXDNQ92626 1479 aa26.03■■□□□ 1.76
UPF3A-203ENST00000474056 USP32Q8NFA0 1604 aa26.03■■□□□ 1.76
UPF3A-203ENST00000474056 MEX3CQ5U5Q3 659 aaKnown RBP26.02■■□□□ 1.76
UPF3A-203ENST00000474056 POTEAQ6S8J7 498 aa26.02■■□□□ 1.76
UPF3A-203ENST00000474056 NPHP3Q7Z494 1330 aa26.01■■□□□ 1.75
UPF3A-203ENST00000474056 SIN3AQ96ST3 1273 aa26.01■■□□□ 1.75
UPF3A-203ENST00000474056 COL22A1Q8NFW1 1626 aaPredicted RBP25.99■■□□□ 1.75
UPF3A-203ENST00000474056 FOXO3O43524 673 aa25.99■■□□□ 1.75
UPF3A-203ENST00000474056 TRIM26Q12899 539 aaPredicted RBP25.98■■□□□ 1.75
UPF3A-203ENST00000474056 XPCQ01831 940 aaPredicted RBP25.97■■□□□ 1.75
UPF3A-203ENST00000474056 HIRIP3Q9BW71 556 aaPredicted RBP25.97■■□□□ 1.75
UPF3A-203ENST00000474056 MINK1Q8N4C8 1332 aaPredicted RBP25.96■■□□□ 1.75
UPF3A-203ENST00000474056 L3MBTL2Q969R5 705 aa25.94■■□□□ 1.74
UPF3A-203ENST00000474056 NEUROD1Q13562 356 aa25.93■■□□□ 1.74
UPF3A-203ENST00000474056 NBPF1Q3BBV0 1214 aa25.93■■□□□ 1.74
UPF3A-203ENST00000474056 ANKARQ7Z5J8 1434 aa25.93■■□□□ 1.74
UPF3A-203ENST00000474056 TULP4Q9NRJ4 1543 aa25.93■■□□□ 1.74
UPF3A-203ENST00000474056 PHF8Q9UPP1 1060 aa25.92■■□□□ 1.74
UPF3A-203ENST00000474056 TRPM1Q7Z4N2 1603 aa25.91■■□□□ 1.74
UPF3A-203ENST00000474056 MARF1Q9Y4F3 1742 aaKnown RBP25.91■■□□□ 1.74
UPF3A-203ENST00000474056 ZNF772Q68DY9 489 aaPredicted RBP25.89■■□□□ 1.74
UPF3A-203ENST00000474056 AFF2P51816 1311 aa25.88■■□□□ 1.73
UPF3A-203ENST00000474056 WASLO00401 505 aaPredicted RBP25.88■■□□□ 1.73
UPF3A-203ENST00000474056 ITSN1Q15811 1721 aa25.88■■□□□ 1.73
UPF3A-203ENST00000474056 PRR36Q9H6K5 1346 aa25.88■■□□□ 1.73
UPF3A-203ENST00000474056 C8orf37Q96NL8 207 aa25.87■■□□□ 1.73
UPF3A-203ENST00000474056 EIF3AQ14152 1382 aaKnown RBP25.86■■□□□ 1.73
UPF3A-203ENST00000474056 ADAMTS2O95450 1211 aa25.86■■□□□ 1.73
UPF3A-203ENST00000474056 KRT28Q7Z3Y7 464 aa25.86■■□□□ 1.73
UPF3A-203ENST00000474056 PMFBP1Q8TBY8 1022 aa25.85■■□□□ 1.73
UPF3A-203ENST00000474056 SPATA31A3Q5VYP0 1347 aa25.85■■□□□ 1.73
UPF3A-203ENST00000474056 TRPM3Q9HCF6 1732 aaPredicted RBP25.84■■□□□ 1.73
UPF3A-203ENST00000474056 QRICH2Q9H0J4 1663 aa25.83■■□□□ 1.73
UPF3A-203ENST00000474056 ATP7BP35670 1465 aa25.83■■□□□ 1.73
UPF3A-203ENST00000474056 TNS3Q68CZ2 1445 aa25.82■■□□□ 1.72
UPF3A-203ENST00000474056 TOPAZ1Q8N9V7 1692 aa25.81■■□□□ 1.72
UPF3A-203ENST00000474056 ABCA3Q99758 1704 aa25.81■■□□□ 1.72
UPF3A-203ENST00000474056 PSME1Q06323 249 aa25.79■■□□□ 1.72
UPF3A-203ENST00000474056 SBNO1A3KN83 1393 aa25.79■■□□□ 1.72
UPF3A-203ENST00000474056 ALS2Q96Q42 1657 aa25.78■■□□□ 1.72
UPF3A-203ENST00000474056 NGLY1Q96IV0 654 aa25.78■■□□□ 1.72
UPF3A-203ENST00000474056 CENPJQ9HC77 1338 aaPredicted RBP25.77■■□□□ 1.72
UPF3A-203ENST00000474056 CDK19Q9BWU1 502 aa25.76■■□□□ 1.71
UPF3A-203ENST00000474056 NBPF8Q3BBV2 869 aa25.75■■□□□ 1.71
UPF3A-203ENST00000474056 NUDT16Q96DE0 195 aaKnown RBP25.75■■□□□ 1.71
UPF3A-203ENST00000474056 ROCK2O75116 1388 aaKnown RBP25.74■■□□□ 1.71
UPF3A-203ENST00000474056 RXRBP28702 533 aa25.73■■□□□ 1.71
UPF3A-203ENST00000474056 GPRASP1Q5JY77 1395 aa25.72■■□□□ 1.71
UPF3A-203ENST00000474056 TONSLQ96HA7 1378 aa25.72■■□□□ 1.71
UPF3A-203ENST00000474056 LMOD2Q6P5Q4 547 aa25.72■■□□□ 1.71
UPF3A-203ENST00000474056 QTRT2Q9H974 415 aaKnown RBP25.72■■□□□ 1.71
UPF3A-203ENST00000474056 ARHGEF10O15013 1369 aa25.71■■□□□ 1.71
UPF3A-203ENST00000474056 FNBP4Q8N3X1 1017 aaPredicted RBP25.71■■□□□ 1.71
UPF3A-203ENST00000474056 NGDNQ8NEJ9 315 aaKnown RBP25.71■■□□□ 1.71
UPF3A-203ENST00000474056 USP21Q9UK80 565 aa25.71■■□□□ 1.71
UPF3A-203ENST00000474056 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.7■■□□□ 1.7
UPF3A-203ENST00000474056 CRYBG1Q9Y4K1 1723 aa25.7■■□□□ 1.7
UPF3A-203ENST00000474056 CDK12Q9NYV4 1490 aaPredicted RBP25.7■■□□□ 1.7
UPF3A-203ENST00000474056 PLEKHG5O94827 1062 aa25.69■■□□□ 1.7
UPF3A-203ENST00000474056 CABLES1Q8TDN4 633 aa25.69■■□□□ 1.7
UPF3A-203ENST00000474056 BCL9LQ86UU0 1499 aa25.67■■□□□ 1.7
UPF3A-203ENST00000474056 PLCH1Q4KWH8 1693 aa25.67■■□□□ 1.7
UPF3A-203ENST00000474056 RGS12O14924 1447 aa25.66■■□□□ 1.7
UPF3A-203ENST00000474056 ATRNO75882 1429 aa25.66■■□□□ 1.7
UPF3A-203ENST00000474056 RBM6P78332 1123 aaKnown RBP25.66■■□□□ 1.7
UPF3A-203ENST00000474056 CCDC61Q9Y6R9 512 aa25.66■■□□□ 1.7
UPF3A-203ENST00000474056 HAP1P54257 671 aaPredicted RBP25.65■■□□□ 1.7
UPF3A-203ENST00000474056 SRPK2P78362 688 aaKnown RBP25.65■■□□□ 1.7
UPF3A-203ENST00000474056 CABP2Q9NPB3 220 aa25.65■■□□□ 1.7
UPF3A-203ENST00000474056 POLR3AO14802 1390 aaPredicted RBP25.65■■□□□ 1.7
UPF3A-203ENST00000474056 SLIT2O94813 1529 aa25.64■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms