RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 SLC26A8Q96RN1 970 aa8.41□□□□□ -1.06
CLK1-210ENST00000473565 SLC24A1O60721 1099 aa8.4□□□□□ -1.06
CLK1-210ENST00000473565 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.4□□□□□ -1.06
CLK1-210ENST00000473565 ZBED9Q6R2W3 1325 aa8.4□□□□□ -1.06
CLK1-210ENST00000473565 SUPT16HQ9Y5B9 1047 aaKnown RBP8.4□□□□□ -1.07
CLK1-210ENST00000473565 RIMS1Q86UR5 1692 aaKnown RBP8.4□□□□□ -1.07
CLK1-210ENST00000473565 LRPPRCP42704 1394 aaKnown RBP8.4□□□□□ -1.07
CLK1-210ENST00000473565 IRX6P78412 446 aaPredicted RBP8.39□□□□□ -1.07
CLK1-210ENST00000473565 FKBP8Q14318 412 aa8.39□□□□□ -1.07
CLK1-210ENST00000473565 CDK19Q9BWU1 502 aa8.39□□□□□ -1.07
CLK1-210ENST00000473565 NLRP1Q9C000 1473 aa8.38□□□□□ -1.07
CLK1-210ENST00000473565 NCKAP5LQ9HCH0 1330 aa8.38□□□□□ -1.07
CLK1-210ENST00000473565 ADAMTS13Q76LX8 1427 aa8.38□□□□□ -1.07
CLK1-210ENST00000473565 ADAMTS8Q9UP79 889 aa8.37□□□□□ -1.07
CLK1-210ENST00000473565 A0A1W2PP64 1363 aa8.37□□□□□ -1.07
CLK1-210ENST00000473565 ABCC11Q96J66 1382 aa8.37□□□□□ -1.07
CLK1-210ENST00000473565 HDGFP51858 240 aaKnown RBP8.37□□□□□ -1.07
CLK1-210ENST00000473565 CABP1Q9NZU7 370 aa8.37□□□□□ -1.07
CLK1-210ENST00000473565 NUTM2FA1L443 756 aa8.36□□□□□ -1.07
CLK1-210ENST00000473565 MORC1Q86VD1 984 aa8.36□□□□□ -1.07
CLK1-210ENST00000473565 EID1Q9Y6B2 187 aa8.36□□□□□ -1.07
CLK1-210ENST00000473565 ANKRD36BQ8N2N9 1353 aa8.35□□□□□ -1.07
CLK1-210ENST00000473565 ROBO2Q9HCK4 1378 aa8.35□□□□□ -1.07
CLK1-210ENST00000473565 NPC1L1Q9UHC9 1359 aa8.35□□□□□ -1.07
CLK1-210ENST00000473565 GGNBP2Q9H3C7 697 aa8.35□□□□□ -1.07
CLK1-210ENST00000473565 DLC1Q96QB1 1528 aa8.35□□□□□ -1.07
CLK1-210ENST00000473565 PLEKHG1Q9ULL1 1385 aa8.35□□□□□ -1.07
CLK1-210ENST00000473565 CCDC146Q8IYE0 955 aa8.35□□□□□ -1.07
CLK1-210ENST00000473565 CD163L1Q9NR16 1453 aa8.35□□□□□ -1.07
CLK1-210ENST00000473565 PTPRUQ92729 1446 aa8.34□□□□□ -1.07
CLK1-210ENST00000473565 CGNL1Q0VF96 1302 aa8.34□□□□□ -1.07
CLK1-210ENST00000473565 WDR43Q15061 677 aaKnown RBP eCLIP8.34□□□□□ -1.07
CLK1-210ENST00000473565 THEMISQ8N1K5 641 aaPredicted RBP8.34□□□□□ -1.07
CLK1-210ENST00000473565 ATAD2Q6PL18 1390 aa8.34□□□□□ -1.07
CLK1-210ENST00000473565 WASLO00401 505 aaPredicted RBP8.33□□□□□ -1.08
CLK1-210ENST00000473565 NEFLP07196 543 aa8.33□□□□□ -1.08
CLK1-210ENST00000473565 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.33□□□□□ -1.08
CLK1-210ENST00000473565 ARHGAP23Q9P227 1491 aa8.33□□□□□ -1.08
CLK1-210ENST00000473565 CEP170BQ9Y4F5 1589 aaPredicted RBP8.33□□□□□ -1.08
CLK1-210ENST00000473565 CDCA7LQ96GN5 454 aa8.33□□□□□ -1.08
CLK1-210ENST00000473565 PUS7Q96PZ0 661 aaKnown RBP8.33□□□□□ -1.08
CLK1-210ENST00000473565 SLIT1O75093 1534 aa8.33□□□□□ -1.08
CLK1-210ENST00000473565 FBLN1P23142 703 aa8.33□□□□□ -1.08
CLK1-210ENST00000473565 ADAMTSL3P82987 1691 aa8.32□□□□□ -1.08
CLK1-210ENST00000473565 AMOTL2Q9Y2J4 779 aa8.32□□□□□ -1.08
CLK1-210ENST00000473565 BLMP54132 1417 aaPredicted RBP8.32□□□□□ -1.08
CLK1-210ENST00000473565 MTHFSP49914 203 aa8.32□□□□□ -1.08
CLK1-210ENST00000473565 TERF2IPQ9NYB0 399 aa8.32□□□□□ -1.08
CLK1-210ENST00000473565 KNDC1Q76NI1 1749 aa8.32□□□□□ -1.08
CLK1-210ENST00000473565 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.32□□□□□ -1.08
CLK1-210ENST00000473565 CPS1P31327 1500 aa8.32□□□□□ -1.08
CLK1-210ENST00000473565 TECPR2O15040 1411 aa8.32□□□□□ -1.08
CLK1-210ENST00000473565 PRR36Q9H6K5 1346 aa8.32□□□□□ -1.08
CLK1-210ENST00000473565 MED14O60244 1454 aa8.31□□□□□ -1.08
CLK1-210ENST00000473565 NUDT16Q96DE0 195 aaKnown RBP8.31□□□□□ -1.08
CLK1-210ENST00000473565 RBM33Q96EV2 1170 aaKnown RBP8.31□□□□□ -1.08
CLK1-210ENST00000473565 FYB1O15117 783 aa8.31□□□□□ -1.08
CLK1-210ENST00000473565 HDGFL2Q7Z4V5 671 aaPredicted RBP8.31□□□□□ -1.08
CLK1-210ENST00000473565 NUDCQ9Y266 331 aa8.31□□□□□ -1.08
CLK1-210ENST00000473565 PPIP5K1Q6PFW1 1433 aa8.31□□□□□ -1.08
CLK1-210ENST00000473565 USP32Q8NFA0 1604 aa8.31□□□□□ -1.08
CLK1-210ENST00000473565 ZRANB1Q9UGI0 708 aa8.31□□□□□ -1.08
CLK1-210ENST00000473565 FAM135BQ49AJ0 1406 aa8.3□□□□□ -1.08
CLK1-210ENST00000473565 SMG6Q86US8 1419 aaKnown RBP8.3□□□□□ -1.08
CLK1-210ENST00000473565 NINLQ9Y2I6 1382 aa8.3□□□□□ -1.08
CLK1-210ENST00000473565 KCNA6P17658 529 aa8.29□□□□□ -1.08
CLK1-210ENST00000473565 TBX22Q9Y458 520 aa8.29□□□□□ -1.08
CLK1-210ENST00000473565 APAF1O14727 1248 aa8.29□□□□□ -1.08
CLK1-210ENST00000473565 NME9Q86XW9 330 aa8.29□□□□□ -1.08
CLK1-210ENST00000473565 CCDC61Q9Y6R9 512 aa8.28□□□□□ -1.08
CLK1-210ENST00000473565 SHPRHQ149N8 1683 aa8.28□□□□□ -1.08
CLK1-210ENST00000473565 ATP7BP35670 1465 aa8.28□□□□□ -1.08
CLK1-210ENST00000473565 POLR3AO14802 1390 aaPredicted RBP8.28□□□□□ -1.08
CLK1-210ENST00000473565 PPM1GO15355 546 aaPredicted RBP8.27□□□□□ -1.08
CLK1-210ENST00000473565 SIRT1Q96EB6 747 aa8.27□□□□□ -1.08
CLK1-210ENST00000473565 RRP7AQ9Y3A4 280 aaKnown RBP8.27□□□□□ -1.08
CLK1-210ENST00000473565 ANKLE2Q86XL3 938 aa8.27□□□□□ -1.09
CLK1-210ENST00000473565 PMFBP1Q8TBY8 1022 aa8.27□□□□□ -1.09
CLK1-210ENST00000473565 KIF20BQ96Q89 1820 aa8.27□□□□□ -1.09
CLK1-210ENST00000473565 NSD2O96028 1365 aa8.27□□□□□ -1.09
CLK1-210ENST00000473565 NEUROD2Q15784 382 aa8.27□□□□□ -1.09
CLK1-210ENST00000473565 SETD1BQ9UPS6 1966 aaKnown RBP8.27□□□□□ -1.09
CLK1-210ENST00000473565 CPSF1Q10570 1443 aaKnown RBP8.26□□□□□ -1.09
CLK1-210ENST00000473565 DMRT2Q9Y5R5 561 aa8.26□□□□□ -1.09
CLK1-210ENST00000473565 RGPD8O14715 1765 aaPredicted RBP8.26□□□□□ -1.09
CLK1-210ENST00000473565 NKTRP30414 1462 aaKnown RBP8.26□□□□□ -1.09
CLK1-210ENST00000473565 ANKRD26Q9UPS8 1709 aa8.26□□□□□ -1.09
CLK1-210ENST00000473565 ZNF142P52746 1687 aaPredicted RBP8.25□□□□□ -1.09
CLK1-210ENST00000473565 CDC42BPGQ6DT37 1551 aa8.25□□□□□ -1.09
CLK1-210ENST00000473565 ACEP12821 1306 aa8.25□□□□□ -1.09
CLK1-210ENST00000473565 U2SURPO15042 1029 aaKnown RBP8.25□□□□□ -1.09
CLK1-210ENST00000473565 U2AF1L5P0DN76 240 aaPredicted RBP8.25□□□□□ -1.09
CLK1-210ENST00000473565 U2AF1Q01081 240 aaKnown RBP eCLIP8.25□□□□□ -1.091e-7■■■□□ 17.6
CLK1-210ENST00000473565 SPINK5Q9NQ38 1064 aaPredicted RBP8.25□□□□□ -1.09
CLK1-210ENST00000473565 XRN1Q8IZH2 1706 aaKnown RBP8.25□□□□□ -1.09
CLK1-210ENST00000473565 CFAP53Q96M91 514 aa8.25□□□□□ -1.09
CLK1-210ENST00000473565 ITSN1Q15811 1721 aa8.24□□□□□ -1.09
CLK1-210ENST00000473565 SOX12O15370 315 aa8.24□□□□□ -1.09
CLK1-210ENST00000473565 EMILIN1Q9Y6C2 1016 aa8.24□□□□□ -1.09
CLK1-210ENST00000473565 ADGRB2O60241 1585 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms