RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 CFAP44Q96MT7 982 aa7.77□□□□□ -1.17
HERC4-209ENST00000473533 BRPF3Q9ULD4 1205 aa7.77□□□□□ -1.17
HERC4-209ENST00000473533 LMTK2Q8IWU2 1503 aa7.77□□□□□ -1.17
HERC4-209ENST00000473533 TRAPPC8Q9Y2L5 1435 aa7.77□□□□□ -1.17
HERC4-209ENST00000473533 IFT172Q9UG01 1749 aa7.77□□□□□ -1.17
HERC4-209ENST00000473533 BCAR3O75815 825 aa7.77□□□□□ -1.17
HERC4-209ENST00000473533 RTN4Q9NQC3 1192 aaKnown RBP7.77□□□□□ -1.17
HERC4-209ENST00000473533 TBC1D32Q96NH3 1257 aa7.76□□□□□ -1.17
HERC4-209ENST00000473533 RARSP54136 660 aaKnown RBP7.76□□□□□ -1.17
HERC4-209ENST00000473533 EFCAB6Q5THR3 1501 aa7.76□□□□□ -1.17
HERC4-209ENST00000473533 DDX11L8A8MPP1 907 aa7.76□□□□□ -1.17
HERC4-209ENST00000473533 ANO8Q9HCE9 1232 aaPredicted RBP7.76□□□□□ -1.17
HERC4-209ENST00000473533 COG6Q9Y2V7 657 aa7.76□□□□□ -1.17
HERC4-209ENST00000473533 IQSEC2Q5JU85 1478 aa7.76□□□□□ -1.17
HERC4-209ENST00000473533 ABCC11Q96J66 1382 aa7.76□□□□□ -1.17
HERC4-209ENST00000473533 ZKSCAN2Q63HK3 967 aa7.75□□□□□ -1.17
HERC4-209ENST00000473533 CHMP5Q9NZZ3 219 aa7.75□□□□□ -1.17
HERC4-209ENST00000473533 IGHDP01880 384 aa7.75□□□□□ -1.17
HERC4-209ENST00000473533 FTSJ3Q8IY81 847 aaKnown RBP7.75□□□□□ -1.17
HERC4-209ENST00000473533 GOLGA6L3A6NEY3 463 aa7.75□□□□□ -1.17
HERC4-209ENST00000473533 PHF23Q9BUL5 403 aaPredicted RBP7.75□□□□□ -1.17
HERC4-209ENST00000473533 NSD3Q9BZ95 1437 aa7.74□□□□□ -1.17
HERC4-209ENST00000473533 ABCA9Q8IUA7 1624 aa7.74□□□□□ -1.17
HERC4-209ENST00000473533 DDX19BQ9UMR2 479 aa7.74□□□□□ -1.17
HERC4-209ENST00000473533 IPO8O15397 1037 aaKnown RBP7.74□□□□□ -1.17
HERC4-209ENST00000473533 GLIPR1L2Q4G1C9 344 aa7.74□□□□□ -1.17
HERC4-209ENST00000473533 HSCBQ8IWL3 235 aa7.74□□□□□ -1.17
HERC4-209ENST00000473533 USP19O94966 1318 aa7.74□□□□□ -1.17
HERC4-209ENST00000473533 IL16Q14005 1332 aa7.74□□□□□ -1.17
HERC4-209ENST00000473533 PRKCSHP14314 528 aaPredicted RBP7.74□□□□□ -1.17
HERC4-209ENST00000473533 MVPQ14764 893 aaKnown RBP7.74□□□□□ -1.17
HERC4-209ENST00000473533 KIF16BQ96L93 1317 aa7.74□□□□□ -1.17
HERC4-209ENST00000473533 ZNF518AQ6AHZ1 1483 aa7.73□□□□□ -1.17
HERC4-209ENST00000473533 SHPRHQ149N8 1683 aa7.73□□□□□ -1.17
HERC4-209ENST00000473533 SKAP1Q86WV1 359 aa7.73□□□□□ -1.17
HERC4-209ENST00000473533 TCP11L2Q8N4U5 519 aa7.73□□□□□ -1.17
HERC4-209ENST00000473533 PANK1Q8TE04 598 aa7.73□□□□□ -1.17
HERC4-209ENST00000473533 ZNF428Q96B54 188 aa7.73□□□□□ -1.17
HERC4-209ENST00000473533 CIZ1Q9ULV3 898 aaPredicted RBP7.73□□□□□ -1.17
HERC4-209ENST00000473533 ADGRB3O60242 1522 aa7.73□□□□□ -1.17
HERC4-209ENST00000473533 NLRP1Q9C000 1473 aa7.73□□□□□ -1.17
HERC4-209ENST00000473533 EVC2Q86UK5 1308 aa7.73□□□□□ -1.17
HERC4-209ENST00000473533 HDAC1Q13547 482 aaPredicted RBP7.73□□□□□ -1.17
HERC4-209ENST00000473533 DZIP1LQ8IYY4 767 aaKnown RBP7.73□□□□□ -1.17
HERC4-209ENST00000473533 PDZRN3Q9UPQ7 1066 aa7.73□□□□□ -1.17
HERC4-209ENST00000473533 ZC3H13Q5T200 1668 aaKnown RBP7.73□□□□□ -1.17
HERC4-209ENST00000473533 KIF3BO15066 747 aa7.72□□□□□ -1.17
HERC4-209ENST00000473533 SKOR2Q2VWA4 1001 aaPredicted RBP7.72□□□□□ -1.17
HERC4-209ENST00000473533 CFAP70Q5T0N1 1121 aa7.72□□□□□ -1.17
HERC4-209ENST00000473533 QRICH2Q9H0J4 1663 aa7.72□□□□□ -1.17
HERC4-209ENST00000473533 CFAP74Q9C0B2 1584 aa7.72□□□□□ -1.17
HERC4-209ENST00000473533 MRE11P49959 708 aa7.72□□□□□ -1.17
HERC4-209ENST00000473533 SPINK5Q9NQ38 1064 aaPredicted RBP7.72□□□□□ -1.17
HERC4-209ENST00000473533 ANTXR1Q9H6X2 564 aa7.72□□□□□ -1.17
HERC4-209ENST00000473533 ANKRD36BQ8N2N9 1353 aa7.72□□□□□ -1.17
HERC4-209ENST00000473533 ADGRB2O60241 1585 aa7.71□□□□□ -1.17
HERC4-209ENST00000473533 GBP4Q96PP9 640 aa7.71□□□□□ -1.17
HERC4-209ENST00000473533 CARD14Q9BXL6 1004 aa7.71□□□□□ -1.17
HERC4-209ENST00000473533 REREQ9P2R6 1566 aa7.71□□□□□ -1.17
HERC4-209ENST00000473533 MCM4P33991 863 aa7.71□□□□□ -1.18
HERC4-209ENST00000473533 C22orf23Q9BZE7 217 aa7.71□□□□□ -1.18
HERC4-209ENST00000473533 SLKQ9H2G2 1235 aaPredicted RBP7.71□□□□□ -1.18
HERC4-209ENST00000473533 TBC1D2Q9BYX2 928 aa7.71□□□□□ -1.18
HERC4-209ENST00000473533 C14orf93Q9H972 538 aaKnown RBP7.71□□□□□ -1.18
HERC4-209ENST00000473533 CALD1Q05682 793 aaKnown RBP7.7□□□□□ -1.18
HERC4-209ENST00000473533 MROH1Q8NDA8 1641 aa7.7□□□□□ -1.18
HERC4-209ENST00000473533 ADGRF5Q8IZF2 1346 aa7.7□□□□□ -1.18
HERC4-209ENST00000473533 UBE2Q2Q8WVN8 375 aa7.7□□□□□ -1.18
HERC4-209ENST00000473533 PPLO60437 1756 aa7.7□□□□□ -1.18
HERC4-209ENST00000473533 GOLGA6L22H0YM25 854 aa7.69□□□□□ -1.18
HERC4-209ENST00000473533 SNX21Q969T3 373 aa7.69□□□□□ -1.18
HERC4-209ENST00000473533 NOS1P29475 1434 aa7.69□□□□□ -1.18
HERC4-209ENST00000473533 ALDH1L2Q3SY69 923 aa7.69□□□□□ -1.18
HERC4-209ENST00000473533 AFAP1Q8N556 730 aa7.69□□□□□ -1.18
HERC4-209ENST00000473533 SMC4Q9NTJ3 1288 aa7.69□□□□□ -1.18
HERC4-209ENST00000473533 POGKQ9P215 609 aa7.69□□□□□ -1.18
HERC4-209ENST00000473533 MED14O60244 1454 aa7.69□□□□□ -1.18
HERC4-209ENST00000473533 VGFO15240 615 aaPredicted RBP7.69□□□□□ -1.18
HERC4-209ENST00000473533 MTHFSP49914 203 aa7.69□□□□□ -1.18
HERC4-209ENST00000473533 PCDHB15Q9Y5E8 787 aa7.69□□□□□ -1.18
HERC4-209ENST00000473533 PPRC1Q5VV67 1664 aaKnown RBP7.68□□□□□ -1.18
HERC4-209ENST00000473533 FSD2A1L4K1 749 aa7.68□□□□□ -1.18
HERC4-209ENST00000473533 U2AF1L5P0DN76 240 aaPredicted RBP7.68□□□□□ -1.18
HERC4-209ENST00000473533 U2AF1Q01081 240 aaKnown RBP eCLIP7.68□□□□□ -1.185e-7■■■■□ 20.1
HERC4-209ENST00000473533 ANP32BQ92688 251 aaKnown RBP7.68□□□□□ -1.18
HERC4-209ENST00000473533 MROH2AA6NES4 1674 aa7.68□□□□□ -1.18
HERC4-209ENST00000473533 ATAD2Q6PL18 1390 aa7.68□□□□□ -1.18
HERC4-209ENST00000473533 NEUROD2Q15784 382 aa7.68□□□□□ -1.18
HERC4-209ENST00000473533 ATF7IPQ6VMQ6 1270 aa7.68□□□□□ -1.18
HERC4-209ENST00000473533 SMC5Q8IY18 1101 aa7.67□□□□□ -1.18
HERC4-209ENST00000473533 TRAK2O60296 914 aa7.67□□□□□ -1.18
HERC4-209ENST00000473533 CLCN1P35523 988 aa7.67□□□□□ -1.18
HERC4-209ENST00000473533 TERF2IPQ9NYB0 399 aa7.67□□□□□ -1.18
HERC4-209ENST00000473533 ZFYVE9O95405 1425 aa7.67□□□□□ -1.18
HERC4-209ENST00000473533 ADGRB1O14514 1584 aa7.67□□□□□ -1.18
HERC4-209ENST00000473533 SEC24BO95487 1268 aa7.67□□□□□ -1.18
HERC4-209ENST00000473533 RBM25P49756 843 aaKnown RBP7.67□□□□□ -1.18
HERC4-209ENST00000473533 GCC1Q96CN9 775 aa7.67□□□□□ -1.18
HERC4-209ENST00000473533 TRIM44Q96DX7 344 aaPredicted RBP7.67□□□□□ -1.18
HERC4-209ENST00000473533 DMRT2Q9Y5R5 561 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms