RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 ARHGAP35Q9NRY4 1499 aa5.34□□□□□ -1.55
VPS50-210ENST00000471188 KDM2BQ8NHM5 1336 aa5.34□□□□□ -1.55
VPS50-210ENST00000471188 DDX11L8A8MPP1 907 aa5.34□□□□□ -1.55
VPS50-210ENST00000471188 XPCQ01831 940 aaPredicted RBP5.34□□□□□ -1.55
VPS50-210ENST00000471188 ZNF710Q8N1W2 664 aa5.34□□□□□ -1.55
VPS50-210ENST00000471188 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.34□□□□□ -1.55
VPS50-210ENST00000471188 CHMP5Q9NZZ3 219 aa5.34□□□□□ -1.55
VPS50-210ENST00000471188 SYNJ2O15056 1496 aa5.34□□□□□ -1.56
VPS50-210ENST00000471188 NASPP49321 788 aaPredicted RBP5.33□□□□□ -1.56
VPS50-210ENST00000471188 CBX1P83916 185 aa5.33□□□□□ -1.56
VPS50-210ENST00000471188 DMTNQ08495 405 aa5.33□□□□□ -1.56
VPS50-210ENST00000471188 IPO4Q8TEX9 1081 aaKnown RBP5.33□□□□□ -1.56
VPS50-210ENST00000471188 ANTXR1Q9H6X2 564 aa5.33□□□□□ -1.56
VPS50-210ENST00000471188 DNTTIP2Q5QJE6 756 aaKnown RBP5.33□□□□□ -1.56
VPS50-210ENST00000471188 TIAM1Q13009 1591 aa5.33□□□□□ -1.56
VPS50-210ENST00000471188 CCDC173Q0VFZ6 552 aa5.33□□□□□ -1.56
VPS50-210ENST00000471188 MMRN1Q13201 1228 aa5.33□□□□□ -1.56
VPS50-210ENST00000471188 TMEM92Q6UXU6 159 aa5.33□□□□□ -1.56
VPS50-210ENST00000471188 GAS2L3Q86XJ1 694 aa5.33□□□□□ -1.56
VPS50-210ENST00000471188 SPNS2Q8IVW8 549 aa5.32□□□□□ -1.56
VPS50-210ENST00000471188 FBXO22Q8NEZ5 403 aa5.32□□□□□ -1.56
VPS50-210ENST00000471188 ISY1Q9ULR0 285 aaKnown RBP5.32□□□□□ -1.56
VPS50-210ENST00000471188 DIP2BQ9P265 1576 aa5.32□□□□□ -1.56
VPS50-210ENST00000471188 USP19O94966 1318 aa5.32□□□□□ -1.56
VPS50-210ENST00000471188 MYBBP1AQ9BQG0 1328 aaKnown RBP5.32□□□□□ -1.56
VPS50-210ENST00000471188 MAP3K4Q9Y6R4 1608 aa5.32□□□□□ -1.56
VPS50-210ENST00000471188 DHX29Q7Z478 1369 aaKnown RBP5.32□□□□□ -1.56
VPS50-210ENST00000471188 CUL7Q14999 1698 aa5.32□□□□□ -1.56
VPS50-210ENST00000471188 FMN1Q68DA7 1419 aa5.32□□□□□ -1.56
VPS50-210ENST00000471188 IGSF3O75054 1194 aa5.31□□□□□ -1.56
VPS50-210ENST00000471188 CGNQ9P2M7 1197 aaKnown RBP5.31□□□□□ -1.56
VPS50-210ENST00000471188 AQRO60306 1485 aaKnown RBP eCLIP5.31□□□□□ -1.56
VPS50-210ENST00000471188 DYNC1I1O14576 645 aa5.31□□□□□ -1.56
VPS50-210ENST00000471188 UTP14CQ5TAP6 766 aaKnown RBP5.31□□□□□ -1.56
VPS50-210ENST00000471188 CCDC94Q9BW85 323 aaPredicted RBP5.31□□□□□ -1.56
VPS50-210ENST00000471188 PRXQ9BXM0 1461 aa5.31□□□□□ -1.56
VPS50-210ENST00000471188 FAM205CA6NFA0 338 aa5.31□□□□□ -1.56
VPS50-210ENST00000471188 ZSCAN20P17040 1043 aaPredicted RBP5.31□□□□□ -1.56
VPS50-210ENST00000471188 HSCBQ8IWL3 235 aa5.31□□□□□ -1.56
VPS50-210ENST00000471188 HS6ST3Q8IZP7 471 aa5.31□□□□□ -1.56
VPS50-210ENST00000471188 MPHOSPH9Q99550 1183 aa5.31□□□□□ -1.56
VPS50-210ENST00000471188 ADCY10Q96PN6 1610 aa5.3□□□□□ -1.56
VPS50-210ENST00000471188 TERF1P54274 439 aa5.3□□□□□ -1.56
VPS50-210ENST00000471188 NKX1-1Q15270 411 aaPredicted RBP5.3□□□□□ -1.56
VPS50-210ENST00000471188 ZNF830Q96NB3 372 aaPredicted RBP5.3□□□□□ -1.56
VPS50-210ENST00000471188 GBP4Q96PP9 640 aa5.3□□□□□ -1.56
VPS50-210ENST00000471188 BRD4O60885 1362 aaPredicted RBP5.3□□□□□ -1.56
VPS50-210ENST00000471188 KIF15Q9NS87 1388 aa5.3□□□□□ -1.56
VPS50-210ENST00000471188 E9PSI1 815 aa5.3□□□□□ -1.56
VPS50-210ENST00000471188 MFAP1P55081 439 aaKnown RBP5.3□□□□□ -1.56
VPS50-210ENST00000471188 RALBP1Q15311 655 aa5.3□□□□□ -1.56
VPS50-210ENST00000471188 ILDR1Q86SU0 546 aaPredicted RBP5.3□□□□□ -1.56
VPS50-210ENST00000471188 NLRP13Q86W25 1043 aa5.3□□□□□ -1.56
VPS50-210ENST00000471188 CHMP4AQ9BY43 222 aa5.3□□□□□ -1.56
VPS50-210ENST00000471188 TMEM51Q9NW97 253 aa5.3□□□□□ -1.56
VPS50-210ENST00000471188 GRIN2BQ13224 1484 aa5.3□□□□□ -1.56
VPS50-210ENST00000471188 FGD5Q6ZNL6 1462 aa5.3□□□□□ -1.56
VPS50-210ENST00000471188 KDM5BQ9UGL1 1544 aa5.3□□□□□ -1.56
VPS50-210ENST00000471188 KIF20AO95235 890 aa5.29□□□□□ -1.56
VPS50-210ENST00000471188 EMP3P54852 163 aa5.29□□□□□ -1.56
VPS50-210ENST00000471188 ERCC6L2Q5T890 1561 aa5.29□□□□□ -1.56
VPS50-210ENST00000471188 ZNF771Q7L3S4 317 aaPredicted RBP5.29□□□□□ -1.56
VPS50-210ENST00000471188 SNAPC4Q5SXM2 1469 aa5.29□□□□□ -1.56
VPS50-210ENST00000471188 LRPPRCP42704 1394 aaKnown RBP5.29□□□□□ -1.56
VPS50-210ENST00000471188 CC2D1BQ5T0F9 858 aaKnown RBP5.29□□□□□ -1.56
VPS50-210ENST00000471188 MAPK8IP3Q9UPT6 1336 aa5.29□□□□□ -1.56
VPS50-210ENST00000471188 HFM1A2PYH4 1435 aa5.29□□□□□ -1.56
VPS50-210ENST00000471188 C2orf72A6NCS6 295 aa5.29□□□□□ -1.56
VPS50-210ENST00000471188 LETM1O95202 739 aaPredicted RBP5.29□□□□□ -1.56
VPS50-210ENST00000471188 IGHDP01880 384 aa5.29□□□□□ -1.56
VPS50-210ENST00000471188 PTMAP06454 111 aaKnown RBP5.29□□□□□ -1.56
VPS50-210ENST00000471188 TSC1Q92574 1164 aa5.29□□□□□ -1.56
VPS50-210ENST00000471188 TBC1D32Q96NH3 1257 aa5.29□□□□□ -1.56
VPS50-210ENST00000471188 DDX49Q9Y6V7 483 aaKnown RBP5.29□□□□□ -1.56
VPS50-210ENST00000471188 MTUS2Q5JR59 1369 aa5.29□□□□□ -1.56
VPS50-210ENST00000471188 USP47Q96K76 1375 aa5.29□□□□□ -1.56
VPS50-210ENST00000471188 GOLGA6L22H0YM25 854 aa5.28□□□□□ -1.56
VPS50-210ENST00000471188 HSP90AB1P08238 724 aaKnown RBP5.28□□□□□ -1.56
VPS50-210ENST00000471188 CSPP1Q1MSJ5 1256 aa5.28□□□□□ -1.56
VPS50-210ENST00000471188 GTPBP4Q9BZE4 634 aaKnown RBP5.28□□□□□ -1.56
VPS50-210ENST00000471188 NAIPQ13075 1403 aa5.28□□□□□ -1.56
VPS50-210ENST00000471188 SKOR2Q2VWA4 1001 aaPredicted RBP5.28□□□□□ -1.56
VPS50-210ENST00000471188 SASS6Q6UVJ0 657 aa5.28□□□□□ -1.56
VPS50-210ENST00000471188 TMC2Q8TDI7 906 aa5.28□□□□□ -1.56
VPS50-210ENST00000471188 PTPRKQ15262 1439 aa5.27□□□□□ -1.57
VPS50-210ENST00000471188 FGD6Q6ZV73 1430 aa5.27□□□□□ -1.57
VPS50-210ENST00000471188 FAM177BA6PVY3 158 aa5.27□□□□□ -1.57
VPS50-210ENST00000471188 FTSJ3Q8IY81 847 aaKnown RBP5.27□□□□□ -1.57
VPS50-210ENST00000471188 JARID2Q92833 1246 aaPredicted RBP5.27□□□□□ -1.57
VPS50-210ENST00000471188 TNPO1Q92973 898 aaKnown RBP5.27□□□□□ -1.57
VPS50-210ENST00000471188 PPP1R9BQ96SB3 815 aa5.27□□□□□ -1.57
VPS50-210ENST00000471188 C22orf23Q9BZE7 217 aa5.27□□□□□ -1.57
VPS50-210ENST00000471188 CARD11Q9BXL7 1154 aa5.27□□□□□ -1.57
VPS50-210ENST00000471188 PANK3Q9H999 370 aa5.27□□□□□ -1.57
VPS50-210ENST00000471188 KIF27Q86VH2 1401 aa5.27□□□□□ -1.57
VPS50-210ENST00000471188 GRIN2AQ12879 1464 aa5.27□□□□□ -1.57
VPS50-210ENST00000471188 PTPN23Q9H3S7 1636 aa5.27□□□□□ -1.57
VPS50-210ENST00000471188 AEBP1Q8IUX7 1158 aa5.26□□□□□ -1.57
VPS50-210ENST00000471188 COG6Q9Y2V7 657 aa5.26□□□□□ -1.57
VPS50-210ENST00000471188 BCAR3O75815 825 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms