RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 CCNB3Q8WWL7 1395 aa7.24□□□□□ -1.25
SF3B1-208ENST00000470268 MYOM3Q5VTT5 1437 aa7.24□□□□□ -1.25
SF3B1-208ENST00000470268 FAM69CQ0P6D2 419 aa7.23□□□□□ -1.25
SF3B1-208ENST00000470268 EPAS1Q99814 870 aa7.23□□□□□ -1.25
SF3B1-208ENST00000470268 DIP2BQ9P265 1576 aa7.23□□□□□ -1.25
SF3B1-208ENST00000470268 SPDYE16A6NNV3 312 aaPredicted RBP7.23□□□□□ -1.25
SF3B1-208ENST00000470268 ITGBL1O95965 494 aaPredicted RBP7.23□□□□□ -1.25
SF3B1-208ENST00000470268 ZNF644Q9H582 1327 aaPredicted RBP7.23□□□□□ -1.25
SF3B1-208ENST00000470268 FGD6Q6ZV73 1430 aa7.23□□□□□ -1.25
SF3B1-208ENST00000470268 RRBP1Q9P2E9 1410 aaKnown RBP7.23□□□□□ -1.25
SF3B1-208ENST00000470268 ABCA9Q8IUA7 1624 aa7.23□□□□□ -1.25
SF3B1-208ENST00000470268 PLCH2O75038 1416 aa7.22□□□□□ -1.25
SF3B1-208ENST00000470268 CD109Q6YHK3 1445 aa7.22□□□□□ -1.25
SF3B1-208ENST00000470268 PDIA6Q15084 440 aa7.22□□□□□ -1.25
SF3B1-208ENST00000470268 CFDP1Q9UEE9 299 aaPredicted RBP7.22□□□□□ -1.25
SF3B1-208ENST00000470268 GLI2P10070 1586 aa7.21□□□□□ -1.25
SF3B1-208ENST00000470268 MIA2Q96PC5 1412 aa7.21□□□□□ -1.26
SF3B1-208ENST00000470268 DPYSL4O14531 572 aa7.21□□□□□ -1.26
SF3B1-208ENST00000470268 PCGF6Q9BYE7 350 aa7.21□□□□□ -1.26
SF3B1-208ENST00000470268 CDC42BPAQ5VT25 1732 aa7.21□□□□□ -1.26
SF3B1-208ENST00000470268 SOWAHBA6NEL2 793 aa7.2□□□□□ -1.26
SF3B1-208ENST00000470268 COL9A1P20849 921 aa7.2□□□□□ -1.26
SF3B1-208ENST00000470268 ZC3H15Q8WU90 426 aaKnown RBP7.2□□□□□ -1.26
SF3B1-208ENST00000470268 ZNF777Q9ULD5 760 aaPredicted RBP7.2□□□□□ -1.26
SF3B1-208ENST00000470268 PREX2Q70Z35 1606 aa7.2□□□□□ -1.26
SF3B1-208ENST00000470268 PROX2Q3B8N5 592 aa7.2□□□□□ -1.26
SF3B1-208ENST00000470268 CDC42BPBQ9Y5S2 1711 aa7.19□□□□□ -1.26
SF3B1-208ENST00000470268 MAP3K4Q9Y6R4 1608 aa7.19□□□□□ -1.26
SF3B1-208ENST00000470268 ARHGAP5Q13017 1502 aa7.19□□□□□ -1.26
SF3B1-208ENST00000470268 TRIM26Q12899 539 aaPredicted RBP7.19□□□□□ -1.26
SF3B1-208ENST00000470268 FAM50AQ14320 339 aaKnown RBP7.19□□□□□ -1.26
SF3B1-208ENST00000470268 FANCAO15360 1455 aa7.19□□□□□ -1.26
SF3B1-208ENST00000470268 TCOF1Q13428 1488 aaKnown RBP7.19□□□□□ -1.26
SF3B1-208ENST00000470268 KIF13AQ9H1H9 1805 aa7.19□□□□□ -1.26
SF3B1-208ENST00000470268 ARAP3Q8WWN8 1544 aa7.19□□□□□ -1.26
SF3B1-208ENST00000470268 CAMSAP2Q08AD1 1489 aa7.18□□□□□ -1.26
SF3B1-208ENST00000470268 EFCAB2Q5VUJ9 269 aa7.18□□□□□ -1.26
SF3B1-208ENST00000470268 KIAA1468Q9P260 1216 aa7.18□□□□□ -1.26
SF3B1-208ENST00000470268 PTPN23Q9H3S7 1636 aa7.18□□□□□ -1.26
SF3B1-208ENST00000470268 SAMD9LQ8IVG5 1584 aa7.18□□□□□ -1.26
SF3B1-208ENST00000470268 MYO5CQ9NQX4 1742 aa7.18□□□□□ -1.26
SF3B1-208ENST00000470268 ARHGEF12Q9NZN5 1544 aa7.18□□□□□ -1.26
SF3B1-208ENST00000470268 ITSN2Q9NZM3 1697 aa7.18□□□□□ -1.26
SF3B1-208ENST00000470268 ZFRQ96KR1 1074 aaKnown RBP7.18□□□□□ -1.26
SF3B1-208ENST00000470268 MBD5Q9P267 1494 aa7.17□□□□□ -1.26
SF3B1-208ENST00000470268 MLLT3P42568 568 aaPredicted RBP7.17□□□□□ -1.26
SF3B1-208ENST00000470268 HNRNPMP52272 730 aaKnown RBP eCLIP7.17□□□□□ -1.26
SF3B1-208ENST00000470268 PTPRKQ15262 1439 aa7.17□□□□□ -1.26
SF3B1-208ENST00000470268 C6orf132Q5T0Z8 1188 aa7.17□□□□□ -1.26
SF3B1-208ENST00000470268 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.17□□□□□ -1.26
SF3B1-208ENST00000470268 AKNAQ7Z591 1439 aa7.17□□□□□ -1.26
SF3B1-208ENST00000470268 ITGAEP38570 1179 aa7.17□□□□□ -1.26
SF3B1-208ENST00000470268 PPRC1Q5VV67 1664 aaKnown RBP7.17□□□□□ -1.26
SF3B1-208ENST00000470268 BCAMP50895 628 aa7.16□□□□□ -1.26
SF3B1-208ENST00000470268 KCNC4Q03721 635 aa7.16□□□□□ -1.26
SF3B1-208ENST00000470268 ABCC5O15440 1437 aa7.15□□□□□ -1.26
SF3B1-208ENST00000470268 KIAA1107Q9UPP5 1409 aa7.15□□□□□ -1.26
SF3B1-208ENST00000470268 TRAPPC8Q9Y2L5 1435 aa7.15□□□□□ -1.26
SF3B1-208ENST00000470268 ABCC1P33527 1531 aa7.15□□□□□ -1.26
SF3B1-208ENST00000470268 SYCP2Q9BX26 1530 aa7.15□□□□□ -1.26
SF3B1-208ENST00000470268 TRIM6-TRIM34B2RNG4 842 aa7.15□□□□□ -1.26
SF3B1-208ENST00000470268 FAM98CQ17RN3 349 aaKnown RBP7.15□□□□□ -1.26
SF3B1-208ENST00000470268 SCAPERQ9BY12 1400 aa7.15□□□□□ -1.27
SF3B1-208ENST00000470268 ZMYND10O75800 440 aa7.15□□□□□ -1.27
SF3B1-208ENST00000470268 AFAP1Q8N556 730 aa7.15□□□□□ -1.27
SF3B1-208ENST00000470268 ADGRL1O94910 1474 aa7.15□□□□□ -1.27
SF3B1-208ENST00000470268 NEO1Q92859 1461 aa7.15□□□□□ -1.27
SF3B1-208ENST00000470268 COL17A1Q9UMD9 1497 aaPredicted RBP7.15□□□□□ -1.27
SF3B1-208ENST00000470268 DAPK1P53355 1430 aa7.14□□□□□ -1.27
SF3B1-208ENST00000470268 TSR3Q9UJK0 312 aaKnown RBP7.14□□□□□ -1.27
SF3B1-208ENST00000470268 TSPOAP1O95153 1857 aa7.14□□□□□ -1.27
SF3B1-208ENST00000470268 RAPGEF3O95398 923 aa7.13□□□□□ -1.27
SF3B1-208ENST00000470268 CHIC2Q9UKJ5 165 aa7.13□□□□□ -1.27
SF3B1-208ENST00000470268 PLEKHH2Q8IVE3 1493 aa7.13□□□□□ -1.27
SF3B1-208ENST00000470268 TEX14Q8IWB6 1497 aa7.13□□□□□ -1.27
SF3B1-208ENST00000470268 LRCH3Q96II8 777 aa7.13□□□□□ -1.27
SF3B1-208ENST00000470268 WBP1LQ9NX94 342 aa7.13□□□□□ -1.27
SF3B1-208ENST00000470268 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.13□□□□□ -1.27
SF3B1-208ENST00000470268 DNMT1P26358 1616 aaKnown RBP7.12□□□□□ -1.27
SF3B1-208ENST00000470268 RBM26Q5T8P6 1007 aaKnown RBP7.12□□□□□ -1.27
SF3B1-208ENST00000470268 POGZQ7Z3K3 1410 aa7.12□□□□□ -1.27
SF3B1-208ENST00000470268 ARHGEF5Q12774 1597 aa7.12□□□□□ -1.27
SF3B1-208ENST00000470268 CCDC141Q6ZP82 1450 aa7.12□□□□□ -1.27
SF3B1-208ENST00000470268 RSPH4AQ5TD94 716 aa7.11□□□□□ -1.27
SF3B1-208ENST00000470268 BARGINQ6ZT62 677 aa7.11□□□□□ -1.27
SF3B1-208ENST00000470268 PACS2Q86VP3 889 aa7.11□□□□□ -1.27
SF3B1-208ENST00000470268 GPIHBP1Q8IV16 184 aa7.11□□□□□ -1.27
SF3B1-208ENST00000470268 CFAP74Q9C0B2 1584 aa7.11□□□□□ -1.27
SF3B1-208ENST00000470268 LAPTM4AQ15012 233 aa7.11□□□□□ -1.27
SF3B1-208ENST00000470268 SEPT9Q9UHD8 586 aaPredicted RBP7.11□□□□□ -1.27
SF3B1-208ENST00000470268 DENND4BO75064 1496 aaPredicted RBP7.11□□□□□ -1.27
SF3B1-208ENST00000470268 C9orf84Q5VXU9 1444 aa7.1□□□□□ -1.27
SF3B1-208ENST00000470268 ZNF518AQ6AHZ1 1483 aa7.1□□□□□ -1.27
SF3B1-208ENST00000470268 TSPY4P0CV99 314 aa7.1□□□□□ -1.27
SF3B1-208ENST00000470268 TSPY10P0CW01 314 aa7.1□□□□□ -1.27
SF3B1-208ENST00000470268 RRP7BPQ9NSQ0 103 aa7.1□□□□□ -1.27
SF3B1-208ENST00000470268 HPS5Q9UPZ3 1129 aa7.1□□□□□ -1.27
SF3B1-208ENST00000470268 FRMPD1Q5SYB0 1578 aa7.1□□□□□ -1.27
SF3B1-208ENST00000470268 NCOA1Q15788 1441 aa7.1□□□□□ -1.27
SF3B1-208ENST00000470268 SHANK2Q9UPX8 1470 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms