RNA–Protein interactions for RNA: ENST00000469356.3

SREBF1-208, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 3

Gene SREBF1, Length 1,323 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-208	ENST00000469356	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.34	■■■□□ 2.77
SREBF1-208	ENST00000469356	ADGRL3	Q9HAR2	1447 aa		32.34	■■■□□ 2.77
SREBF1-208	ENST00000469356	PLEKHH1	Q9ULM0	1364 aa		32.33	■■■□□ 2.77
SREBF1-208	ENST00000469356	ATF3	P18847	181 aa		32.32	■■■□□ 2.76
SREBF1-208	ENST00000469356	USP47	Q96K76	1375 aa		32.31	■■■□□ 2.76
SREBF1-208	ENST00000469356	CADPS2	Q86UW7	1296 aa		32.3	■■■□□ 2.76
SREBF1-208	ENST00000469356	DCC	P43146	1447 aa		32.3	■■■□□ 2.76
SREBF1-208	ENST00000469356	EIF4G2	P78344	907 aa	Known RBP eCLIP	32.29	■■■□□ 2.76
SREBF1-208	ENST00000469356	TOM1	O60784	492 aa		32.27	■■■□□ 2.76
SREBF1-208	ENST00000469356	MINK1	Q8N4C8	1332 aa	Predicted RBP	32.27	■■■□□ 2.76
SREBF1-208	ENST00000469356	NALCN	Q8IZF0	1738 aa		32.26	■■■□□ 2.76
SREBF1-208	ENST00000469356	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.26	■■■□□ 2.76
SREBF1-208	ENST00000469356	QRICH2	Q9H0J4	1663 aa		32.25	■■■□□ 2.75
SREBF1-208	ENST00000469356	ST20-MTHFS	A0A0A6YYL1	179 aa		32.24	■■■□□ 2.75
SREBF1-208	ENST00000469356	SBNO2	Q9Y2G9	1366 aa		32.22	■■■□□ 2.75
SREBF1-208	ENST00000469356	CDC42BPG	Q6DT37	1551 aa		32.21	■■■□□ 2.75
SREBF1-208	ENST00000469356	ADGRB2	O60241	1585 aa		32.2	■■■□□ 2.75
SREBF1-208	ENST00000469356	HIRIP3	Q9BW71	556 aa	Predicted RBP	32.2	■■■□□ 2.74
SREBF1-208	ENST00000469356	EVC2	Q86UK5	1308 aa		32.2	■■■□□ 2.74
SREBF1-208	ENST00000469356	UBAP1L	F5GYI3	381 aa		32.19	■■■□□ 2.74
SREBF1-208	ENST00000469356	WASL	O00401	505 aa	Predicted RBP	32.19	■■■□□ 2.74
SREBF1-208	ENST00000469356	HSPA5	P11021	654 aa	Known RBP	32.15	■■■□□ 2.74
SREBF1-208	ENST00000469356	SLAIN2	Q9P270	581 aa		32.14	■■■□□ 2.74
SREBF1-208	ENST00000469356	CDK19	Q9BWU1	502 aa		32.13	■■■□□ 2.73
SREBF1-208	ENST00000469356	TMF1	P82094	1093 aa		32.12	■■■□□ 2.73
SREBF1-208	ENST00000469356	FMN2	Q9NZ56	1722 aa		32.11	■■■□□ 2.73
SREBF1-208	ENST00000469356	SRPK2	P78362	688 aa	Known RBP	32.11	■■■□□ 2.73
SREBF1-208	ENST00000469356	CDCA8	Q53HL2	280 aa		32.1	■■■□□ 2.73
SREBF1-208	ENST00000469356	TESK2	Q96S53	571 aa		32.1	■■■□□ 2.73
SREBF1-208	ENST00000469356	ANKAR	Q7Z5J8	1434 aa		32.09	■■■□□ 2.73
SREBF1-208	ENST00000469356	MST1R	Q04912	1400 aa		32.07	■■■□□ 2.72
SREBF1-208	ENST00000469356	PUS7	Q96PZ0	661 aa	Known RBP	32.06	■■■□□ 2.72
SREBF1-208	ENST00000469356	TULP4	Q9NRJ4	1543 aa		32.06	■■■□□ 2.72
SREBF1-208	ENST00000469356	NUTM2F	A1L443	756 aa		32.05	■■■□□ 2.72
SREBF1-208	ENST00000469356	C1orf167	Q5SNV9	1468 aa		32.05	■■■□□ 2.72
SREBF1-208	ENST00000469356	SCAF1	Q9H7N4	1312 aa	Known RBP	32.04	■■■□□ 2.72
SREBF1-208	ENST00000469356	PIP4K2B	P78356	416 aa		32.02	■■■□□ 2.72
SREBF1-208	ENST00000469356	NUDT16	Q96DE0	195 aa	Known RBP	32.02	■■■□□ 2.72
SREBF1-208	ENST00000469356	ESCO1	Q5FWF5	840 aa		32.01	■■■□□ 2.72
SREBF1-208	ENST00000469356	CABP2	Q9NPB3	220 aa		32.01	■■■□□ 2.72
SREBF1-208	ENST00000469356	ATAD2	Q6PL18	1390 aa		32.01	■■■□□ 2.71
SREBF1-208	ENST00000469356	CCDC61	Q9Y6R9	512 aa		32	■■■□□ 2.71
SREBF1-208	ENST00000469356	ITSN1	Q15811	1721 aa		31.98	■■■□□ 2.71
SREBF1-208	ENST00000469356	FBXO41	Q8TF61	875 aa		31.98	■■■□□ 2.71
SREBF1-208	ENST00000469356	RGPD8	O14715	1765 aa	Predicted RBP	31.95	■■■□□ 2.71
SREBF1-208	ENST00000469356	BRINP3	Q76B58	766 aa		31.95	■■■□□ 2.7
SREBF1-208	ENST00000469356	PHF8	Q9UPP1	1060 aa		31.95	■■■□□ 2.7
SREBF1-208	ENST00000469356	ATP7B	P35670	1465 aa		31.94	■■■□□ 2.7
SREBF1-208	ENST00000469356	ORAI2	Q96SN7	254 aa		31.94	■■■□□ 2.7
SREBF1-208	ENST00000469356	PRR36	Q9H6K5	1346 aa		31.94	■■■□□ 2.7
SREBF1-208	ENST00000469356	USP32	Q8NFA0	1604 aa		31.92	■■■□□ 2.7
SREBF1-208	ENST00000469356	KIF1A	Q12756	1690 aa		31.92	■■■□□ 2.7
SREBF1-208	ENST00000469356	ROBO1	Q9Y6N7	1651 aa		31.92	■■■□□ 2.7
SREBF1-208	ENST00000469356	DISP3	Q9P2K9	1392 aa		31.92	■■■□□ 2.7
SREBF1-208	ENST00000469356	PPIP5K1	Q6PFW1	1433 aa		31.88	■■■□□ 2.69
SREBF1-208	ENST00000469356	NINL	Q9Y2I6	1382 aa		31.88	■■■□□ 2.69
SREBF1-208	ENST00000469356	PLEKHG3	A1L390	1219 aa		31.88	■■■□□ 2.69
SREBF1-208	ENST00000469356	NGDN	Q8NEJ9	315 aa	Known RBP	31.88	■■■□□ 2.69
SREBF1-208	ENST00000469356	NPHP3	Q7Z494	1330 aa		31.87	■■■□□ 2.69
SREBF1-208	ENST00000469356	PMFBP1	Q8TBY8	1022 aa		31.87	■■■□□ 2.69
SREBF1-208	ENST00000469356	TMC1	Q8TDI8	760 aa		31.87	■■■□□ 2.69
SREBF1-208	ENST00000469356	CABP1	Q9NZU7	370 aa		31.86	■■■□□ 2.69
SREBF1-208	ENST00000469356	TOPAZ1	Q8N9V7	1692 aa		31.86	■■■□□ 2.69
SREBF1-208	ENST00000469356	POLR3GL	Q9BT43	218 aa		31.85	■■■□□ 2.69
SREBF1-208	ENST00000469356	PSME1	Q06323	249 aa		31.83	■■■□□ 2.69
SREBF1-208	ENST00000469356	FOXO3	O43524	673 aa		31.82	■■■□□ 2.68
SREBF1-208	ENST00000469356	ZNF692	Q9BU19	519 aa	Predicted RBP	31.81	■■■□□ 2.68
SREBF1-208	ENST00000469356	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	31.8	■■■□□ 2.68
SREBF1-208	ENST00000469356	TERF2IP	Q9NYB0	399 aa		31.8	■■■□□ 2.68
SREBF1-208	ENST00000469356	ACE	P12821	1306 aa		31.8	■■■□□ 2.68
SREBF1-208	ENST00000469356	POLR3A	O14802	1390 aa	Predicted RBP	31.78	■■■□□ 2.68
SREBF1-208	ENST00000469356	NHSL1	Q5SYE7	1610 aa		31.78	■■■□□ 2.68
SREBF1-208	ENST00000469356	AHDC1	Q5TGY3	1603 aa	Predicted RBP	31.78	■■■□□ 2.68
SREBF1-208	ENST00000469356	KRT28	Q7Z3Y7	464 aa		31.76	■■■□□ 2.68
SREBF1-208	ENST00000469356	SLC12A5	Q9H2X9	1139 aa		31.76	■■■□□ 2.68
SREBF1-208	ENST00000469356	KIF7	Q2M1P5	1343 aa		31.75	■■■□□ 2.67
SREBF1-208	ENST00000469356	PHLPP1	O60346	1717 aa		31.75	■■■□□ 2.67
SREBF1-208	ENST00000469356	BRD4	O60885	1362 aa	Predicted RBP	31.75	■■■□□ 2.67
SREBF1-208	ENST00000469356	C11orf95	C9JLR9	678 aa	Predicted RBP	31.75	■■■□□ 2.67
SREBF1-208	ENST00000469356	LRRC59	Q96AG4	307 aa	Known RBP	31.73	■■■□□ 2.67
SREBF1-208	ENST00000469356	SOS2	Q07890	1332 aa	Predicted RBP	31.72	■■■□□ 2.67
SREBF1-208	ENST00000469356	CCDC7	Q96M83	1385 aa		31.71	■■■□□ 2.67
SREBF1-208	ENST00000469356	DDX17	Q92841	729 aa	Known RBP	31.71	■■■□□ 2.67
SREBF1-208	ENST00000469356	KTN1	Q86UP2	1357 aa	Known RBP	31.68	■■■□□ 2.66
SREBF1-208	ENST00000469356	ANKRD36B	Q8N2N9	1353 aa		31.68	■■■□□ 2.66
SREBF1-208	ENST00000469356	CPSF1	Q10570	1443 aa	Known RBP	31.68	■■■□□ 2.66
SREBF1-208	ENST00000469356	AKAP12	Q02952	1782 aa		31.68	■■■□□ 2.66
SREBF1-208	ENST00000469356	HSPA1L	P34931	641 aa		31.68	■■■□□ 2.66
SREBF1-208	ENST00000469356	SBNO1	A3KN83	1393 aa		31.68	■■■□□ 2.66
SREBF1-208	ENST00000469356	XPC	Q01831	940 aa	Predicted RBP	31.67	■■■□□ 2.66
SREBF1-208	ENST00000469356	WASHC2A	Q641Q2	1341 aa		31.67	■■■□□ 2.66
SREBF1-208	ENST00000469356	PAK3	O75914	559 aa	Predicted RBP	31.66	■■■□□ 2.66
SREBF1-208	ENST00000469356	PXDN	Q92626	1479 aa		31.66	■■■□□ 2.66
SREBF1-208	ENST00000469356	USP6	P35125	1406 aa		31.65	■■■□□ 2.66
SREBF1-208	ENST00000469356	MYOM1	P52179	1685 aa		31.64	■■■□□ 2.66
SREBF1-208	ENST00000469356		A0A1W2PP64	1363 aa		31.63	■■■□□ 2.65
SREBF1-208	ENST00000469356	COL16A1	Q07092	1604 aa	Predicted RBP	31.63	■■■□□ 2.65
SREBF1-208	ENST00000469356	ZNF316	A6NFI3	1004 aa	Predicted RBP	31.62	■■■□□ 2.65
SREBF1-208	ENST00000469356	CD163L1	Q9NR16	1453 aa		31.61	■■■□□ 2.65
SREBF1-208	ENST00000469356	SPATA31A3	Q5VYP0	1347 aa		31.6	■■■□□ 2.65

Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms