RNA–Protein interactions for RNA: ENST00000469232.5

NPHP3-204, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,616 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-204ENST00000469232 DLC1Q96QB1 1528 aa11.55□□□□□ -0.56
NPHP3-204ENST00000469232 HSPA5P11021 654 aaKnown RBP11.54□□□□□ -0.56
NPHP3-204ENST00000469232 PIK3R4Q99570 1358 aa11.54□□□□□ -0.56
NPHP3-204ENST00000469232 SBNO2Q9Y2G9 1366 aa11.54□□□□□ -0.56
NPHP3-204ENST00000469232 POLR1AO95602 1720 aaPredicted RBP11.53□□□□□ -0.56
NPHP3-204ENST00000469232 ZNF316A6NFI3 1004 aaPredicted RBP11.53□□□□□ -0.56
NPHP3-204ENST00000469232 ANKLE2Q86XL3 938 aa11.53□□□□□ -0.56
NPHP3-204ENST00000469232 SIRT1Q96EB6 747 aa11.53□□□□□ -0.56
NPHP3-204ENST00000469232 LRPPRCP42704 1394 aaKnown RBP11.53□□□□□ -0.56
NPHP3-204ENST00000469232 ABCC11Q96J66 1382 aa11.53□□□□□ -0.56
NPHP3-204ENST00000469232 NUTM2DQ5VT03 806 aaPredicted RBP11.53□□□□□ -0.56
NPHP3-204ENST00000469232 KNDC1Q76NI1 1749 aa11.52□□□□□ -0.56
NPHP3-204ENST00000469232 YTHDC2Q9H6S0 1430 aaKnown RBP11.52□□□□□ -0.57
NPHP3-204ENST00000469232 METP08581 1390 aa11.52□□□□□ -0.57
NPHP3-204ENST00000469232 TESK2Q96S53 571 aa11.51□□□□□ -0.57
NPHP3-204ENST00000469232 ARHGEF28Q8N1W1 1705 aaKnown RBP11.51□□□□□ -0.57
NPHP3-204ENST00000469232 CPS1P31327 1500 aa11.5□□□□□ -0.57
NPHP3-204ENST00000469232 NPHP4O75161 1426 aaPredicted RBP11.5□□□□□ -0.57
NPHP3-204ENST00000469232 FAM135BQ49AJ0 1406 aa11.5□□□□□ -0.57
NPHP3-204ENST00000469232 EIF3AQ14152 1382 aaKnown RBP11.5□□□□□ -0.57
NPHP3-204ENST00000469232 XRN1Q8IZH2 1706 aaKnown RBP11.49□□□□□ -0.57
NPHP3-204ENST00000469232 ST20-MTHFSA0A0A6YYL1 179 aa11.49□□□□□ -0.57
NPHP3-204ENST00000469232 TMEM132EQ6IEE7 984 aa11.49□□□□□ -0.57
NPHP3-204ENST00000469232 PTPRUQ92729 1446 aa11.49□□□□□ -0.57
NPHP3-204ENST00000469232 STRCQ7RTU9 1775 aa11.48□□□□□ -0.57
NPHP3-204ENST00000469232 SLC24A1O60721 1099 aa11.48□□□□□ -0.57
NPHP3-204ENST00000469232 PTCH1Q13635 1447 aa11.47□□□□□ -0.57
NPHP3-204ENST00000469232 NWD1Q149M9 1564 aa11.47□□□□□ -0.57
NPHP3-204ENST00000469232 CHD2O14647 1828 aaKnown RBP11.46□□□□□ -0.57
NPHP3-204ENST00000469232 C11orf95C9JLR9 678 aaPredicted RBP11.46□□□□□ -0.58
NPHP3-204ENST00000469232 PUS7Q96PZ0 661 aaKnown RBP11.46□□□□□ -0.58
NPHP3-204ENST00000469232 PRR29P0C7W0 189 aa11.45□□□□□ -0.58
NPHP3-204ENST00000469232 WASHC2AQ641Q2 1341 aa11.45□□□□□ -0.58
NPHP3-204ENST00000469232 CENPJQ9HC77 1338 aaPredicted RBP11.45□□□□□ -0.58
NPHP3-204ENST00000469232 NCKAP5LQ9HCH0 1330 aa11.45□□□□□ -0.58
NPHP3-204ENST00000469232 CCDC7Q96M83 1385 aa11.44□□□□□ -0.58
NPHP3-204ENST00000469232 SLC26A8Q96RN1 970 aa11.44□□□□□ -0.58
NPHP3-204ENST00000469232 QRICH2Q9H0J4 1663 aa11.44□□□□□ -0.58
NPHP3-204ENST00000469232 TRAK1Q9UPV9 953 aa11.43□□□□□ -0.58
NPHP3-204ENST00000469232 ROBO2Q9HCK4 1378 aa11.43□□□□□ -0.58
NPHP3-204ENST00000469232 ADGRB2O60241 1585 aa11.43□□□□□ -0.58
NPHP3-204ENST00000469232 PRKAR2AP13861 404 aaKnown RBP11.42□□□□□ -0.58
NPHP3-204ENST00000469232 HSPA2P54652 639 aa11.42□□□□□ -0.58
NPHP3-204ENST00000469232 HIRIP3Q9BW71 556 aaPredicted RBP11.42□□□□□ -0.58
NPHP3-204ENST00000469232 KIF7Q2M1P5 1343 aa11.42□□□□□ -0.58
NPHP3-204ENST00000469232 DISP3Q9P2K9 1392 aa11.42□□□□□ -0.58
NPHP3-204ENST00000469232 TULP4Q9NRJ4 1543 aa11.41□□□□□ -0.58
NPHP3-204ENST00000469232 AMOTL2Q9Y2J4 779 aa11.41□□□□□ -0.58
NPHP3-204ENST00000469232 NKTRP30414 1462 aaKnown RBP11.41□□□□□ -0.58
NPHP3-204ENST00000469232 PLEKHH1Q9ULM0 1364 aa11.4□□□□□ -0.58
NPHP3-204ENST00000469232 KCNA6P17658 529 aa11.4□□□□□ -0.58
NPHP3-204ENST00000469232 TMF1P82094 1093 aa11.4□□□□□ -0.58
NPHP3-204ENST00000469232 PRAM1Q96QH2 718 aa11.4□□□□□ -0.58
NPHP3-204ENST00000469232 NCOA3Q9Y6Q9 1424 aa11.39□□□□□ -0.59
NPHP3-204ENST00000469232 PROM2Q8N271 834 aa11.38□□□□□ -0.59
NPHP3-204ENST00000469232 STK26Q9P289 416 aa11.38□□□□□ -0.59
NPHP3-204ENST00000469232 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.38□□□□□ -0.59
NPHP3-204ENST00000469232 CDCA8Q53HL2 280 aa11.38□□□□□ -0.59
NPHP3-204ENST00000469232 BCANQ96GW7 911 aa11.38□□□□□ -0.59
NPHP3-204ENST00000469232 CHADLQ6NUI6 762 aa11.37□□□□□ -0.59
NPHP3-204ENST00000469232 WAPLQ7Z5K2 1190 aa11.37□□□□□ -0.59
NPHP3-204ENST00000469232 STRCP1A6NGW2 1772 aa11.37□□□□□ -0.59
NPHP3-204ENST00000469232 MYOM1P52179 1685 aa11.36□□□□□ -0.59
NPHP3-204ENST00000469232 POGKQ9P215 609 aa11.35□□□□□ -0.59
NPHP3-204ENST00000469232 EVC2Q86UK5 1308 aa11.35□□□□□ -0.59
NPHP3-204ENST00000469232 NINLQ9Y2I6 1382 aa11.34□□□□□ -0.59
NPHP3-204ENST00000469232 CDC42BPGQ6DT37 1551 aa11.34□□□□□ -0.59
NPHP3-204ENST00000469232 ADGRL3Q9HAR2 1447 aa11.34□□□□□ -0.59
NPHP3-204ENST00000469232 WASLO00401 505 aaPredicted RBP11.33□□□□□ -0.6
NPHP3-204ENST00000469232 ATAD2Q6PL18 1390 aa11.33□□□□□ -0.6
NPHP3-204ENST00000469232 NALCNQ8IZF0 1738 aa11.32□□□□□ -0.6
NPHP3-204ENST00000469232 PER1O15534 1290 aaPredicted RBP11.31□□□□□ -0.6
NPHP3-204ENST00000469232 FKBP8Q14318 412 aa11.31□□□□□ -0.6
NPHP3-204ENST00000469232 ATP7BP35670 1465 aa11.31□□□□□ -0.6
NPHP3-204ENST00000469232 MINK1Q8N4C8 1332 aaPredicted RBP11.31□□□□□ -0.6
NPHP3-204ENST00000469232 DCCP43146 1447 aa11.31□□□□□ -0.6
NPHP3-204ENST00000469232 ANKARQ7Z5J8 1434 aa11.31□□□□□ -0.6
NPHP3-204ENST00000469232 HAX1O00165 279 aa11.31□□□□□ -0.6
NPHP3-204ENST00000469232 DDX10Q13206 875 aaKnown RBP11.31□□□□□ -0.6
NPHP3-204ENST00000469232 CDK19Q9BWU1 502 aa11.31□□□□□ -0.6
NPHP3-204ENST00000469232 TOPAZ1Q8N9V7 1692 aa11.31□□□□□ -0.6
NPHP3-204ENST00000469232 FMN2Q9NZ56 1722 aa11.3□□□□□ -0.6
NPHP3-204ENST00000469232 USP32Q8NFA0 1604 aa11.3□□□□□ -0.6
NPHP3-204ENST00000469232 LRRC7Q96NW7 1537 aa11.3□□□□□ -0.6
NPHP3-204ENST00000469232 CD163L1Q9NR16 1453 aa11.29□□□□□ -0.6
NPHP3-204ENST00000469232 XIRP1Q702N8 1843 aaKnown RBP11.29□□□□□ -0.6
NPHP3-204ENST00000469232 SAFB2Q14151 953 aaKnown RBP eCLIP11.29□□□□□ -0.6
NPHP3-204ENST00000469232 DIEXFQ68CQ4 756 aaKnown RBP11.29□□□□□ -0.6
NPHP3-204ENST00000469232 PRR36Q9H6K5 1346 aa11.29□□□□□ -0.6
NPHP3-204ENST00000469232 LTBP4Q8N2S1 1624 aa11.28□□□□□ -0.6
NPHP3-204ENST00000469232 NPC1L1Q9UHC9 1359 aa11.28□□□□□ -0.6
NPHP3-204ENST00000469232 TMEM94Q12767 1356 aa11.28□□□□□ -0.6
NPHP3-204ENST00000469232 CABP2Q9NPB3 220 aa11.27□□□□□ -0.6
NPHP3-204ENST00000469232 CPSF1Q10570 1443 aaKnown RBP11.27□□□□□ -0.6
NPHP3-204ENST00000469232 ANKRD36BQ8N2N9 1353 aa11.27□□□□□ -0.61
NPHP3-204ENST00000469232 PLEKHG3A1L390 1219 aa11.27□□□□□ -0.61
NPHP3-204ENST00000469232 PROSER2Q86WR7 435 aaPredicted RBP11.27□□□□□ -0.61
NPHP3-204ENST00000469232 CCDC61Q9Y6R9 512 aa11.27□□□□□ -0.61
NPHP3-204ENST00000469232 ZNF335Q9H4Z2 1342 aaPredicted RBP11.26□□□□□ -0.61
NPHP3-204ENST00000469232 NUDT16Q96DE0 195 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms