RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 RALGAPBQ86X10 1494 aa28.18■■■□□ 2.1
COL9A3-204ENST00000463487 NALCNQ8IZF0 1738 aa28.18■■■□□ 2.1
COL9A3-204ENST00000463487 SCAF1Q9H7N4 1312 aaKnown RBP28.18■■■□□ 2.1
COL9A3-204ENST00000463487 PIP4K2BP78356 416 aa28.15■■■□□ 2.1
COL9A3-204ENST00000463487 EIF3AQ14152 1382 aaKnown RBP28.13■■■□□ 2.09
COL9A3-204ENST00000463487 PLEKHH1Q9ULM0 1364 aa28.13■■■□□ 2.09
COL9A3-204ENST00000463487 ARHGEF28Q8N1W1 1705 aaKnown RBP28.13■■■□□ 2.09
COL9A3-204ENST00000463487 GPRASP1Q5JY77 1395 aa28.12■■■□□ 2.09
COL9A3-204ENST00000463487 CARD11Q9BXL7 1154 aa28.12■■■□□ 2.09
COL9A3-204ENST00000463487 CDC42BPGQ6DT37 1551 aa28.11■■■□□ 2.09
COL9A3-204ENST00000463487 SAFB2Q14151 953 aaKnown RBP eCLIP28.11■■■□□ 2.09
COL9A3-204ENST00000463487 SLAIN2Q9P270 581 aa28.11■■■□□ 2.09
COL9A3-204ENST00000463487 CENPJQ9HC77 1338 aaPredicted RBP28.06■■■□□ 2.08
COL9A3-204ENST00000463487 ADGRB2O60241 1585 aa28.04■■■□□ 2.08
COL9A3-204ENST00000463487 MST1RQ04912 1400 aa28.04■■■□□ 2.08
COL9A3-204ENST00000463487 MINK1Q8N4C8 1332 aaPredicted RBP28.03■■■□□ 2.08
COL9A3-204ENST00000463487 ILDR1Q86SU0 546 aaPredicted RBP28.03■■■□□ 2.08
COL9A3-204ENST00000463487 ROBO1Q9Y6N7 1651 aa28■■■□□ 2.07
COL9A3-204ENST00000463487 QRICH2Q9H0J4 1663 aa27.98■■■□□ 2.07
COL9A3-204ENST00000463487 C1orf167Q5SNV9 1468 aa27.98■■■□□ 2.07
COL9A3-204ENST00000463487 HIRIP3Q9BW71 556 aaPredicted RBP27.98■■■□□ 2.07
COL9A3-204ENST00000463487 FMN2Q9NZ56 1722 aa27.98■■■□□ 2.07
COL9A3-204ENST00000463487 WASLO00401 505 aaPredicted RBP27.95■■■□□ 2.06
COL9A3-204ENST00000463487 ANKARQ7Z5J8 1434 aa27.94■■■□□ 2.06
COL9A3-204ENST00000463487 BRINP3Q76B58 766 aa27.93■■■□□ 2.06
COL9A3-204ENST00000463487 NUTM2FA1L443 756 aa27.92■■■□□ 2.06
COL9A3-204ENST00000463487 SLC24A1O60721 1099 aa27.92■■■□□ 2.06
COL9A3-204ENST00000463487 ESCO1Q5FWF5 840 aa27.91■■■□□ 2.06
COL9A3-204ENST00000463487 TULP4Q9NRJ4 1543 aa27.91■■■□□ 2.06
COL9A3-204ENST00000463487 SBNO2Q9Y2G9 1366 aa27.9■■■□□ 2.06
COL9A3-204ENST00000463487 EVC2Q86UK5 1308 aa27.9■■■□□ 2.06
COL9A3-204ENST00000463487 USP47Q96K76 1375 aa27.89■■■□□ 2.06
COL9A3-204ENST00000463487 CDK19Q9BWU1 502 aa27.88■■■□□ 2.05
COL9A3-204ENST00000463487 HSPA1LP34931 641 aa27.87■■■□□ 2.05
COL9A3-204ENST00000463487 SRPK2P78362 688 aaKnown RBP27.86■■■□□ 2.05
COL9A3-204ENST00000463487 ORAI2Q96SN7 254 aa27.86■■■□□ 2.05
COL9A3-204ENST00000463487 AHDC1Q5TGY3 1603 aaPredicted RBP27.85■■■□□ 2.05
COL9A3-204ENST00000463487 KIF1AQ12756 1690 aa27.85■■■□□ 2.05
COL9A3-204ENST00000463487 PHLPP1O60346 1717 aa27.84■■■□□ 2.05
COL9A3-204ENST00000463487 ITSN1Q15811 1721 aa27.82■■■□□ 2.04
COL9A3-204ENST00000463487 ST20-MTHFSA0A0A6YYL1 179 aa27.82■■■□□ 2.04
COL9A3-204ENST00000463487 NPHP3Q7Z494 1330 aa27.82■■■□□ 2.04
COL9A3-204ENST00000463487 NHSL1Q5SYE7 1610 aa27.81■■■□□ 2.04
COL9A3-204ENST00000463487 NUDT16Q96DE0 195 aaKnown RBP27.81■■■□□ 2.04
COL9A3-204ENST00000463487 PHF8Q9UPP1 1060 aa27.81■■■□□ 2.04
COL9A3-204ENST00000463487 ATP7BP35670 1465 aa27.8■■■□□ 2.04
COL9A3-204ENST00000463487 USP32Q8NFA0 1604 aa27.8■■■□□ 2.04
COL9A3-204ENST00000463487 RGPD8O14715 1765 aaPredicted RBP27.79■■■□□ 2.04
COL9A3-204ENST00000463487 EIF4G2P78344 907 aaKnown RBP eCLIP27.78■■■□□ 2.04
COL9A3-204ENST00000463487 CCDC61Q9Y6R9 512 aa27.78■■■□□ 2.04
COL9A3-204ENST00000463487 PRR36Q9H6K5 1346 aa27.77■■■□□ 2.04
COL9A3-204ENST00000463487 CABP2Q9NPB3 220 aa27.76■■■□□ 2.03
COL9A3-204ENST00000463487 ATAD2Q6PL18 1390 aa27.75■■■□□ 2.03
COL9A3-204ENST00000463487 FOXO3O43524 673 aa27.75■■■□□ 2.03
COL9A3-204ENST00000463487 COL16A1Q07092 1604 aaPredicted RBP27.74■■■□□ 2.03
COL9A3-204ENST00000463487 TMF1P82094 1093 aa27.74■■■□□ 2.03
COL9A3-204ENST00000463487 NGDNQ8NEJ9 315 aaKnown RBP27.73■■■□□ 2.03
COL9A3-204ENST00000463487 LRRC59Q96AG4 307 aaKnown RBP27.73■■■□□ 2.03
COL9A3-204ENST00000463487 TESK2Q96S53 571 aa27.73■■■□□ 2.03
COL9A3-204ENST00000463487 TOPAZ1Q8N9V7 1692 aa27.72■■■□□ 2.03
COL9A3-204ENST00000463487 PSME1Q06323 249 aa27.72■■■□□ 2.03
COL9A3-204ENST00000463487 PMFBP1Q8TBY8 1022 aa27.72■■■□□ 2.03
COL9A3-204ENST00000463487 SOS2Q07890 1332 aaPredicted RBP27.71■■■□□ 2.03
COL9A3-204ENST00000463487 CDCA8Q53HL2 280 aa27.71■■■□□ 2.03
COL9A3-204ENST00000463487 DDX17Q92841 729 aaKnown RBP27.71■■■□□ 2.03
COL9A3-204ENST00000463487 PUS7Q96PZ0 661 aaKnown RBP27.71■■■□□ 2.03
COL9A3-204ENST00000463487 JCADQ9P266 1359 aa27.71■■■□□ 2.03
COL9A3-204ENST00000463487 PPIP5K1Q6PFW1 1433 aa27.7■■■□□ 2.03
COL9A3-204ENST00000463487 ZEB1P37275 1124 aaPredicted RBP27.68■■■□□ 2.02
COL9A3-204ENST00000463487 PLEKHG3A1L390 1219 aa27.67■■■□□ 2.02
COL9A3-204ENST00000463487 KRT28Q7Z3Y7 464 aa27.67■■■□□ 2.02
COL9A3-204ENST00000463487 PXDNQ92626 1479 aa27.67■■■□□ 2.02
COL9A3-204ENST00000463487 HSPA5P11021 654 aaKnown RBP27.66■■■□□ 2.02
COL9A3-204ENST00000463487 XPCQ01831 940 aaPredicted RBP27.65■■■□□ 2.02
COL9A3-204ENST00000463487 POLR3AO14802 1390 aaPredicted RBP27.64■■■□□ 2.02
COL9A3-204ENST00000463487 CABP1Q9NZU7 370 aa27.63■■■□□ 2.01
COL9A3-204ENST00000463487 ACEP12821 1306 aa27.63■■■□□ 2.01
COL9A3-204ENST00000463487 SHPRHQ149N8 1683 aa27.62■■■□□ 2.01
COL9A3-204ENST00000463487 NINLQ9Y2I6 1382 aa27.62■■■□□ 2.01
COL9A3-204ENST00000463487 SBNO1A3KN83 1393 aa27.61■■■□□ 2.01
COL9A3-204ENST00000463487 SPATA31A6Q5VVP1 1343 aa27.61■■■□□ 2.01
COL9A3-204ENST00000463487 DISP3Q9P2K9 1392 aa27.6■■■□□ 2.01
COL9A3-204ENST00000463487 TMC1Q8TDI8 760 aa27.59■■■□□ 2.01
COL9A3-204ENST00000463487 BRD4O60885 1362 aaPredicted RBP27.59■■■□□ 2.01
COL9A3-204ENST00000463487 TNS3Q68CZ2 1445 aa27.58■■■□□ 2.01
COL9A3-204ENST00000463487 ZNF692Q9BU19 519 aaPredicted RBP27.58■■■□□ 2.01
COL9A3-204ENST00000463487 SPATA31A3Q5VYP0 1347 aa27.58■■■□□ 2.01
COL9A3-204ENST00000463487 ARHGEF10O15013 1369 aa27.58■■■□□ 2.01
COL9A3-204ENST00000463487 PNPLA6Q8IY17 1366 aa27.57■■■□□ 2
COL9A3-204ENST00000463487 PAK3O75914 559 aaPredicted RBP27.56■■■□□ 2
COL9A3-204ENST00000463487 LMOD2Q6P5Q4 547 aa27.55■■■□□ 2
COL9A3-204ENST00000463487 HDGFL2Q7Z4V5 671 aaPredicted RBP27.55■■■□□ 2
COL9A3-204ENST00000463487 TERF2IPQ9NYB0 399 aa27.55■■■□□ 2
COL9A3-204ENST00000463487 TRPM3Q9HCF6 1732 aaPredicted RBP27.53■■■□□ 2
COL9A3-204ENST00000463487 USP6P35125 1406 aa27.51■■□□□ 1.99
COL9A3-204ENST00000463487 COL22A1Q8NFW1 1626 aaPredicted RBP27.51■■□□□ 1.99
COL9A3-204ENST00000463487 KTN1Q86UP2 1357 aaKnown RBP27.5■■□□□ 1.99
COL9A3-204ENST00000463487 CPSF1Q10570 1443 aaKnown RBP27.5■■□□□ 1.99
COL9A3-204ENST00000463487 SLC12A5Q9H2X9 1139 aa27.49■■□□□ 1.99
COL9A3-204ENST00000463487 AKAP12Q02952 1782 aa27.49■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms