RNA–Protein interactions for RNA: ENST00000463486.5

VPS52-214, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 925 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-214ENST00000463486 PRAM1Q96QH2 718 aa25.51■■□□□ 1.67
VPS52-214ENST00000463486 NBPF8Q3BBV2 869 aa25.5■■□□□ 1.67
VPS52-214ENST00000463486 BRINP3Q76B58 766 aa25.49■■□□□ 1.67
VPS52-214ENST00000463486 CDC42BPGQ6DT37 1551 aa25.48■■□□□ 1.67
VPS52-214ENST00000463486 C1orf167Q5SNV9 1468 aa25.47■■□□□ 1.67
VPS52-214ENST00000463486 CLSPNQ9HAW4 1339 aa25.46■■□□□ 1.67
VPS52-214ENST00000463486 TRPM1Q7Z4N2 1603 aa25.45■■□□□ 1.66
VPS52-214ENST00000463486 TONSLQ96HA7 1378 aa25.44■■□□□ 1.66
VPS52-214ENST00000463486 SAFB2Q14151 953 aaKnown RBP eCLIP25.43■■□□□ 1.66
VPS52-214ENST00000463486 POGKQ9P215 609 aa25.43■■□□□ 1.66
VPS52-214ENST00000463486 ARHGEF28Q8N1W1 1705 aaKnown RBP25.43■■□□□ 1.66
VPS52-214ENST00000463486 ORAI2Q96SN7 254 aa25.41■■□□□ 1.66
VPS52-214ENST00000463486 AHDC1Q5TGY3 1603 aaPredicted RBP25.4■■□□□ 1.66
VPS52-214ENST00000463486 FMN2Q9NZ56 1722 aa25.38■■□□□ 1.65
VPS52-214ENST00000463486 GPRASP1Q5JY77 1395 aa25.38■■□□□ 1.65
VPS52-214ENST00000463486 ADGRB2O60241 1585 aa25.38■■□□□ 1.65
VPS52-214ENST00000463486 COL16A1Q07092 1604 aaPredicted RBP25.37■■□□□ 1.65
VPS52-214ENST00000463486 PHLPP1O60346 1717 aa25.35■■□□□ 1.65
VPS52-214ENST00000463486 HIRIP3Q9BW71 556 aaPredicted RBP25.35■■□□□ 1.65
VPS52-214ENST00000463486 MINK1Q8N4C8 1332 aaPredicted RBP25.35■■□□□ 1.65
VPS52-214ENST00000463486 NHSL1Q5SYE7 1610 aa25.34■■□□□ 1.65
VPS52-214ENST00000463486 NUTM2FA1L443 756 aa25.34■■□□□ 1.65
VPS52-214ENST00000463486 DDX17Q92841 729 aaKnown RBP25.34■■□□□ 1.65
VPS52-214ENST00000463486 ROCK2O75116 1388 aaKnown RBP25.33■■□□□ 1.65
VPS52-214ENST00000463486 TIMELESSQ9UNS1 1208 aa25.33■■□□□ 1.65
VPS52-214ENST00000463486 CCER1Q8TC90 406 aaPredicted RBP25.32■■□□□ 1.64
VPS52-214ENST00000463486 RALGAPBQ86X10 1494 aa25.32■■□□□ 1.64
VPS52-214ENST00000463486 WASLO00401 505 aaPredicted RBP25.31■■□□□ 1.64
VPS52-214ENST00000463486 ESCO1Q5FWF5 840 aa25.3■■□□□ 1.64
VPS52-214ENST00000463486 USP32Q8NFA0 1604 aa25.3■■□□□ 1.64
VPS52-214ENST00000463486 PRR36Q9H6K5 1346 aa25.29■■□□□ 1.64
VPS52-214ENST00000463486 CENPJQ9HC77 1338 aaPredicted RBP25.28■■□□□ 1.64
VPS52-214ENST00000463486 SOS2Q07890 1332 aaPredicted RBP25.27■■□□□ 1.64
VPS52-214ENST00000463486 ANKARQ7Z5J8 1434 aa25.27■■□□□ 1.64
VPS52-214ENST00000463486 RGPD8O14715 1765 aaPredicted RBP25.26■■□□□ 1.63
VPS52-214ENST00000463486 JCADQ9P266 1359 aa25.25■■□□□ 1.63
VPS52-214ENST00000463486 TULP4Q9NRJ4 1543 aa25.24■■□□□ 1.63
VPS52-214ENST00000463486 PXDNQ92626 1479 aa25.23■■□□□ 1.63
VPS52-214ENST00000463486 FOXO3O43524 673 aa25.23■■□□□ 1.63
VPS52-214ENST00000463486 CDK19Q9BWU1 502 aa25.23■■□□□ 1.63
VPS52-214ENST00000463486 CARD11Q9BXL7 1154 aa25.23■■□□□ 1.63
VPS52-214ENST00000463486 LRRC59Q96AG4 307 aaKnown RBP25.21■■□□□ 1.63
VPS52-214ENST00000463486 PHF8Q9UPP1 1060 aa25.21■■□□□ 1.63
VPS52-214ENST00000463486 QRICH2Q9H0J4 1663 aa25.2■■□□□ 1.63
VPS52-214ENST00000463486 NPHP3Q7Z494 1330 aa25.2■■□□□ 1.62
VPS52-214ENST00000463486 MED1Q15648 1581 aaPredicted RBP25.2■■□□□ 1.62
VPS52-214ENST00000463486 ATP7BP35670 1465 aa25.2■■□□□ 1.62
VPS52-214ENST00000463486 EIF3AQ14152 1382 aaKnown RBP25.19■■□□□ 1.62
VPS52-214ENST00000463486 NUDT16Q96DE0 195 aaKnown RBP25.19■■□□□ 1.62
VPS52-214ENST00000463486 KIF1AQ12756 1690 aa25.19■■□□□ 1.62
VPS52-214ENST00000463486 SHPRHQ149N8 1683 aa25.18■■□□□ 1.62
VPS52-214ENST00000463486 XPCQ01831 940 aaPredicted RBP25.16■■□□□ 1.62
VPS52-214ENST00000463486 PMFBP1Q8TBY8 1022 aa25.16■■□□□ 1.62
VPS52-214ENST00000463486 PNPLA6Q8IY17 1366 aa25.16■■□□□ 1.62
VPS52-214ENST00000463486 SBNO2Q9Y2G9 1366 aa25.14■■□□□ 1.61
VPS52-214ENST00000463486 SPATA31A6Q5VVP1 1343 aa25.13■■□□□ 1.61
VPS52-214ENST00000463486 KRT28Q7Z3Y7 464 aa25.13■■□□□ 1.61
VPS52-214ENST00000463486 LRP6O75581 1613 aa25.12■■□□□ 1.61
VPS52-214ENST00000463486 CABP2Q9NPB3 220 aa25.12■■□□□ 1.61
VPS52-214ENST00000463486 TOPAZ1Q8N9V7 1692 aa25.11■■□□□ 1.61
VPS52-214ENST00000463486 DISP3Q9P2K9 1392 aa25.11■■□□□ 1.61
VPS52-214ENST00000463486 CCDC61Q9Y6R9 512 aa25.11■■□□□ 1.61
VPS52-214ENST00000463486 PLEKHG3A1L390 1219 aa25.1■■□□□ 1.61
VPS52-214ENST00000463486 SPATA31A3Q5VYP0 1347 aa25.1■■□□□ 1.61
VPS52-214ENST00000463486 TESK2Q96S53 571 aa25.09■■□□□ 1.61
VPS52-214ENST00000463486 EVC2Q86UK5 1308 aa25.09■■□□□ 1.61
VPS52-214ENST00000463486 SRPK2P78362 688 aaKnown RBP25.08■■□□□ 1.61
VPS52-214ENST00000463486 ST20-MTHFSA0A0A6YYL1 179 aa25.07■■□□□ 1.6
VPS52-214ENST00000463486 PSME1Q06323 249 aa25.07■■□□□ 1.6
VPS52-214ENST00000463486 RGS17Q9UGC6 210 aaPredicted RBP25.07■■□□□ 1.6
VPS52-214ENST00000463486 SBNO1A3KN83 1393 aa25.06■■□□□ 1.6
VPS52-214ENST00000463486 POLR3AO14802 1390 aaPredicted RBP25.06■■□□□ 1.6
VPS52-214ENST00000463486 ITSN1Q15811 1721 aa25.06■■□□□ 1.6
VPS52-214ENST00000463486 COL22A1Q8NFW1 1626 aaPredicted RBP25.06■■□□□ 1.6
VPS52-214ENST00000463486 TRPM3Q9HCF6 1732 aaPredicted RBP25.03■■□□□ 1.6
VPS52-214ENST00000463486 NGDNQ8NEJ9 315 aaKnown RBP25.03■■□□□ 1.6
VPS52-214ENST00000463486 ACEP12821 1306 aa25.03■■□□□ 1.6
VPS52-214ENST00000463486 USP47Q96K76 1375 aa25.03■■□□□ 1.6
VPS52-214ENST00000463486 TNS3Q68CZ2 1445 aa25.03■■□□□ 1.6
VPS52-214ENST00000463486 PPIP5K1Q6PFW1 1433 aa25.03■■□□□ 1.6
VPS52-214ENST00000463486 NUTM2BA6NNL0 878 aaPredicted RBP25.01■■□□□ 1.59
VPS52-214ENST00000463486 NUTM2EB1AL46 878 aaPredicted RBP25.01■■□□□ 1.59
VPS52-214ENST00000463486 NUTM2AQ8IVF1 878 aaPredicted RBP25.01■■□□□ 1.59
VPS52-214ENST00000463486 CABP1Q9NZU7 370 aa25.01■■□□□ 1.59
VPS52-214ENST00000463486 PUS7Q96PZ0 661 aaKnown RBP24.97■■□□□ 1.59
VPS52-214ENST00000463486 ALS2Q96Q42 1657 aa24.97■■□□□ 1.59
VPS52-214ENST00000463486 ILDR2Q71H61 639 aa24.95■■□□□ 1.58
VPS52-214ENST00000463486 ARHGEF10O15013 1369 aa24.94■■□□□ 1.58
VPS52-214ENST00000463486 ATAD2Q6PL18 1390 aa24.94■■□□□ 1.58
VPS52-214ENST00000463486 PHF23Q9BUL5 403 aaPredicted RBP24.94■■□□□ 1.58
VPS52-214ENST00000463486 SSH2Q76I76 1423 aa24.93■■□□□ 1.58
VPS52-214ENST00000463486 CABLES1Q8TDN4 633 aa24.92■■□□□ 1.58
VPS52-214ENST00000463486 ADAMTS2O95450 1211 aa24.91■■□□□ 1.58
VPS52-214ENST00000463486 CPSF1Q10570 1443 aaKnown RBP24.91■■□□□ 1.58
VPS52-214ENST00000463486 USP6P35125 1406 aa24.9■■□□□ 1.58
VPS52-214ENST00000463486 SLC24A1O60721 1099 aa24.9■■□□□ 1.58
VPS52-214ENST00000463486 MEX3CQ5U5Q3 659 aaKnown RBP24.9■■□□□ 1.58
VPS52-214ENST00000463486 POTEAQ6S8J7 498 aa24.9■■□□□ 1.58
VPS52-214ENST00000463486 CD163L1Q9NR16 1453 aa24.89■■□□□ 1.58
VPS52-214ENST00000463486 LMOD2Q6P5Q4 547 aa24.89■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 177.1 ms