RNA–Protein interactions for RNA: ENST00000450000.5

CPSF7-208, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 4

Gene CPSF7, Length 574 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-208	ENST00000450000	DHX57	Q6P158	1386 aa	Known RBP	32.15	■■■□□ 2.74
CPSF7-208	ENST00000450000	LRP6	O75581	1613 aa		32.15	■■■□□ 2.74
CPSF7-208	ENST00000450000	CFAP70	Q5T0N1	1121 aa		32.13	■■■□□ 2.73
CPSF7-208	ENST00000450000	IFT172	Q9UG01	1749 aa		32.13	■■■□□ 2.73
CPSF7-208	ENST00000450000	NHSL1	Q5SYE7	1610 aa		32.12	■■■□□ 2.73
CPSF7-208	ENST00000450000	YTHDC2	Q9H6S0	1430 aa	Known RBP	32.12	■■■□□ 2.73
CPSF7-208	ENST00000450000	TECPR2	O15040	1411 aa		32.11	■■■□□ 2.73
CPSF7-208	ENST00000450000	NUTM2F	A1L443	756 aa		32.11	■■■□□ 2.73
CPSF7-208	ENST00000450000	KDM2A	Q9Y2K7	1162 aa		32.1	■■■□□ 2.73
CPSF7-208	ENST00000450000	MYOM2	P54296	1465 aa		32.09	■■■□□ 2.73
CPSF7-208	ENST00000450000	NPHP3	Q7Z494	1330 aa		32.08	■■■□□ 2.73
CPSF7-208	ENST00000450000	PNPLA6	Q8IY17	1366 aa		32.07	■■■□□ 2.73
CPSF7-208	ENST00000450000	SIRT1	Q96EB6	747 aa		32.07	■■■□□ 2.72
CPSF7-208	ENST00000450000	SOS2	Q07890	1332 aa	Predicted RBP	32.06	■■■□□ 2.72
CPSF7-208	ENST00000450000	DCAF11	Q8TEB1	546 aa		32.06	■■■□□ 2.72
CPSF7-208	ENST00000450000	C8orf37	Q96NL8	207 aa		32.06	■■■□□ 2.72
CPSF7-208	ENST00000450000	CDC42BPG	Q6DT37	1551 aa		32.06	■■■□□ 2.72
CPSF7-208	ENST00000450000	PLEKHH1	Q9ULM0	1364 aa		32.06	■■■□□ 2.72
CPSF7-208	ENST00000450000	POGK	Q9P215	609 aa		32.05	■■■□□ 2.72
CPSF7-208	ENST00000450000	NRXN1	Q9ULB1	1477 aa		32.03	■■■□□ 2.72
CPSF7-208	ENST00000450000	AFF2	P51816	1311 aa		32.02	■■■□□ 2.72
CPSF7-208	ENST00000450000	FOXO3	O43524	673 aa		32.02	■■■□□ 2.72
CPSF7-208	ENST00000450000	ADAMTS2	O95450	1211 aa		32.02	■■■□□ 2.72
CPSF7-208	ENST00000450000	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.02	■■■□□ 2.72
CPSF7-208	ENST00000450000	STAC3	Q96MF2	364 aa		32.02	■■■□□ 2.72
CPSF7-208	ENST00000450000	RXRB	P28702	533 aa		32.01	■■■□□ 2.71
CPSF7-208	ENST00000450000	NGLY1	Q96IV0	654 aa		32	■■■□□ 2.71
CPSF7-208	ENST00000450000	PRAM1	Q96QH2	718 aa		32	■■■□□ 2.71
CPSF7-208	ENST00000450000	LAMC1	P11047	1609 aa		31.99	■■■□□ 2.71
CPSF7-208	ENST00000450000	KNDC1	Q76NI1	1749 aa		31.98	■■■□□ 2.71
CPSF7-208	ENST00000450000	XPC	Q01831	940 aa	Predicted RBP	31.97	■■■□□ 2.71
CPSF7-208	ENST00000450000	TRAK1	Q9UPV9	953 aa		31.95	■■■□□ 2.71
CPSF7-208	ENST00000450000	QTRT2	Q9H974	415 aa	Known RBP	31.91	■■■□□ 2.7
CPSF7-208	ENST00000450000	PHF8	Q9UPP1	1060 aa		31.88	■■■□□ 2.69
CPSF7-208	ENST00000450000	PSME1	Q06323	249 aa		31.87	■■■□□ 2.69
CPSF7-208	ENST00000450000	KRT28	Q7Z3Y7	464 aa		31.87	■■■□□ 2.69
CPSF7-208	ENST00000450000	USP21	Q9UK80	565 aa		31.86	■■■□□ 2.69
CPSF7-208	ENST00000450000	RBM6	P78332	1123 aa	Known RBP	31.85	■■■□□ 2.69
CPSF7-208	ENST00000450000	DLC1	Q96QB1	1528 aa		31.85	■■■□□ 2.69
CPSF7-208	ENST00000450000	PXDN	Q92626	1479 aa		31.84	■■■□□ 2.69
CPSF7-208	ENST00000450000	FMN2	Q9NZ56	1722 aa		31.83	■■■□□ 2.69
CPSF7-208	ENST00000450000	HAP1	P54257	671 aa	Predicted RBP	31.83	■■■□□ 2.69
CPSF7-208	ENST00000450000	HIRIP3	Q9BW71	556 aa	Predicted RBP	31.83	■■■□□ 2.69
CPSF7-208	ENST00000450000	MINK1	Q8N4C8	1332 aa	Predicted RBP	31.82	■■■□□ 2.68
CPSF7-208	ENST00000450000	LMOD2	Q6P5Q4	547 aa		31.8	■■■□□ 2.68
CPSF7-208	ENST00000450000	EIF3A	Q14152	1382 aa	Known RBP	31.8	■■■□□ 2.68
CPSF7-208	ENST00000450000	KIF1A	Q12756	1690 aa		31.8	■■■□□ 2.68
CPSF7-208	ENST00000450000	TRPC5	Q9UL62	973 aa	Predicted RBP	31.79	■■■□□ 2.68
CPSF7-208	ENST00000450000	SPATA31A3	Q5VYP0	1347 aa		31.78	■■■□□ 2.68
CPSF7-208	ENST00000450000	ADGRB1	O14514	1584 aa		31.78	■■■□□ 2.68
CPSF7-208	ENST00000450000	PMFBP1	Q8TBY8	1022 aa		31.77	■■■□□ 2.68
CPSF7-208	ENST00000450000	CDK12	Q9NYV4	1490 aa	Predicted RBP	31.76	■■■□□ 2.67
CPSF7-208	ENST00000450000	PLEKHG5	O94827	1062 aa		31.75	■■■□□ 2.67
CPSF7-208	ENST00000450000	FNBP4	Q8N3X1	1017 aa	Predicted RBP	31.75	■■■□□ 2.67
CPSF7-208	ENST00000450000	COL22A1	Q8NFW1	1626 aa	Predicted RBP	31.75	■■■□□ 2.67
CPSF7-208	ENST00000450000	ANKAR	Q7Z5J8	1434 aa		31.75	■■■□□ 2.67
CPSF7-208	ENST00000450000	WASL	O00401	505 aa	Predicted RBP	31.73	■■■□□ 2.67
CPSF7-208	ENST00000450000	GPRASP1	Q5JY77	1395 aa		31.69	■■■□□ 2.66
CPSF7-208	ENST00000450000	TNS3	Q68CZ2	1445 aa		31.69	■■■□□ 2.66
CPSF7-208	ENST00000450000	NGDN	Q8NEJ9	315 aa	Known RBP	31.68	■■■□□ 2.66
CPSF7-208	ENST00000450000	UPF1	Q92900	1129 aa	Known RBP eCLIP	31.68	■■■□□ 2.66
CPSF7-208	ENST00000450000	SBNO1	A3KN83	1393 aa		31.68	■■■□□ 2.66
CPSF7-208	ENST00000450000	ARHGEF10	O15013	1369 aa		31.67	■■■□□ 2.66
CPSF7-208	ENST00000450000	ADGRB2	O60241	1585 aa		31.66	■■■□□ 2.66
CPSF7-208	ENST00000450000	RGS12	O14924	1447 aa		31.64	■■■□□ 2.66
CPSF7-208	ENST00000450000	CABLES1	Q8TDN4	633 aa		31.63	■■■□□ 2.65
CPSF7-208	ENST00000450000	RGPD8	O14715	1765 aa	Predicted RBP	31.62	■■■□□ 2.65
CPSF7-208	ENST00000450000	TULP4	Q9NRJ4	1543 aa		31.61	■■■□□ 2.65
CPSF7-208	ENST00000450000	PRR36	Q9H6K5	1346 aa		31.6	■■■□□ 2.65
CPSF7-208	ENST00000450000	PAK3	O75914	559 aa	Predicted RBP	31.6	■■■□□ 2.65
CPSF7-208	ENST00000450000	UNC5CL	Q8IV45	518 aa		31.6	■■■□□ 2.65
CPSF7-208	ENST00000450000	ATRN	O75882	1429 aa		31.59	■■■□□ 2.65
CPSF7-208	ENST00000450000	NEUROD1	Q13562	356 aa		31.59	■■■□□ 2.65
CPSF7-208	ENST00000450000	NUDT16	Q96DE0	195 aa	Known RBP	31.59	■■■□□ 2.65
CPSF7-208	ENST00000450000	NBPF1	Q3BBV0	1214 aa		31.58	■■■□□ 2.65
CPSF7-208	ENST00000450000	CDK19	Q9BWU1	502 aa		31.58	■■■□□ 2.65
CPSF7-208	ENST00000450000	GJD4	Q96KN9	370 aa	Predicted RBP	31.57	■■■□□ 2.64
CPSF7-208	ENST00000450000	BCL9L	Q86UU0	1499 aa		31.56	■■■□□ 2.64
CPSF7-208	ENST00000450000	L3MBTL2	Q969R5	705 aa		31.55	■■■□□ 2.64
CPSF7-208	ENST00000450000	USP32	Q8NFA0	1604 aa		31.55	■■■□□ 2.64
CPSF7-208	ENST00000450000	SIN3A	Q96ST3	1273 aa		31.54	■■■□□ 2.64
CPSF7-208	ENST00000450000	CCDC9	Q9Y3X0	531 aa	Known RBP	31.54	■■■□□ 2.64
CPSF7-208	ENST00000450000	ATAD2	Q6PL18	1390 aa		31.54	■■■□□ 2.64
CPSF7-208	ENST00000450000	ARHGEF28	Q8N1W1	1705 aa	Known RBP	31.52	■■■□□ 2.64
CPSF7-208	ENST00000450000	KIAA1210	Q9ULL0	1709 aa		31.51	■■■□□ 2.63
CPSF7-208	ENST00000450000	MARF1	Q9Y4F3	1742 aa	Known RBP	31.51	■■■□□ 2.63
CPSF7-208	ENST00000450000	SRPK2	P78362	688 aa	Known RBP	31.5	■■■□□ 2.63
CPSF7-208	ENST00000450000	CENPJ	Q9HC77	1338 aa	Predicted RBP	31.49	■■■□□ 2.63
CPSF7-208	ENST00000450000	CCDC61	Q9Y6R9	512 aa		31.49	■■■□□ 2.63
CPSF7-208	ENST00000450000	SLIT2	O94813	1529 aa		31.48	■■■□□ 2.63
CPSF7-208	ENST00000450000	ATP7B	P35670	1465 aa		31.45	■■■□□ 2.62
CPSF7-208	ENST00000450000	FAM83G	A6ND36	823 aa		31.43	■■■□□ 2.62
CPSF7-208	ENST00000450000	VPS72	Q15906	364 aa		31.43	■■■□□ 2.62
CPSF7-208	ENST00000450000	RALGAPB	Q86X10	1494 aa		31.41	■■■□□ 2.62
CPSF7-208	ENST00000450000	ACE	P12821	1306 aa		31.41	■■■□□ 2.62
CPSF7-208	ENST00000450000		A0A0G2JS52	829 aa		31.4	■■■□□ 2.62
CPSF7-208	ENST00000450000	MYT1	Q01538	1121 aa		31.4	■■■□□ 2.62
CPSF7-208	ENST00000450000	NBPF8	Q3BBV2	869 aa		31.4	■■■□□ 2.62
CPSF7-208	ENST00000450000	ITSN1	Q15811	1721 aa		31.4	■■■□□ 2.62
CPSF7-208	ENST00000450000	BTG4	Q9NY30	223 aa		31.39	■■■□□ 2.62

Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms