RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 ROBO2Q9HCK4 1378 aa21.37■■□□□ 1.01
USP39-206ENST00000448971 SOS2Q07890 1332 aaPredicted RBP21.37■■□□□ 1.01
USP39-206ENST00000448971 RPGRIP1LQ68CZ1 1315 aa21.37■■□□□ 1.01
USP39-206ENST00000448971 SRCAPQ6ZRS2 3230 aa21.36■■□□□ 1.01
USP39-206ENST00000448971 PTCH1Q13635 1447 aa21.36■■□□□ 1.01
USP39-206ENST00000448971 LAMC1P11047 1609 aa21.36■■□□□ 1.01
USP39-206ENST00000448971 RGL3Q3MIN7 710 aa21.35■■□□□ 1.01
USP39-206ENST00000448971 NGLY1Q96IV0 654 aa21.35■■□□□ 1.01
USP39-206ENST00000448971 RGS12O14924 1447 aa21.35■■□□□ 1.01
USP39-206ENST00000448971 ADAMTS2O95450 1211 aa21.34■■□□□ 1.01
USP39-206ENST00000448971 TRIM26Q12899 539 aaPredicted RBP21.34■■□□□ 1.01
USP39-206ENST00000448971 IFT172Q9UG01 1749 aa21.34■■□□□ 1.01
USP39-206ENST00000448971 ANKRD30BQ9BXX2 1392 aa21.34■■□□□ 1.01
USP39-206ENST00000448971 PRAG1Q86YV5 1406 aa21.33■■□□□ 1.01
USP39-206ENST00000448971 FNBP4Q8N3X1 1017 aaPredicted RBP21.3■■□□□ 1
USP39-206ENST00000448971 POTEDQ86YR6 584 aa21.29■■□□□ 1
USP39-206ENST00000448971 USP21Q9UK80 565 aa21.27■■□□□ 1
USP39-206ENST00000448971 MYOM2P54296 1465 aa21.26■□□□□ 0.99
USP39-206ENST00000448971 TRPC5Q9UL62 973 aaPredicted RBP21.25■□□□□ 0.99
USP39-206ENST00000448971 ADGRF5Q8IZF2 1346 aa21.25■□□□□ 0.99
USP39-206ENST00000448971 PIK3C2GO75747 1445 aa21.23■□□□□ 0.99
USP39-206ENST00000448971 EP400Q96L91 3159 aa21.23■□□□□ 0.99
USP39-206ENST00000448971 ESCO1Q5FWF5 840 aa21.22■□□□□ 0.99
USP39-206ENST00000448971 COL22A1Q8NFW1 1626 aaPredicted RBP21.22■□□□□ 0.99
USP39-206ENST00000448971 NPHP3Q7Z494 1330 aa21.21■□□□□ 0.99
USP39-206ENST00000448971 ATRNO75882 1429 aa21.21■□□□□ 0.99
USP39-206ENST00000448971 FOXO3O43524 673 aa21.19■□□□□ 0.98
USP39-206ENST00000448971 WAPLQ7Z5K2 1190 aa21.19■□□□□ 0.98
USP39-206ENST00000448971 ATAD2Q6PL18 1390 aa21.19■□□□□ 0.98
USP39-206ENST00000448971 BCL9LQ86UU0 1499 aa21.19■□□□□ 0.98
USP39-206ENST00000448971 PXDNQ92626 1479 aa21.19■□□□□ 0.98
USP39-206ENST00000448971 NRXN1Q9ULB1 1477 aa21.19■□□□□ 0.98
USP39-206ENST00000448971 CDC42BPGQ6DT37 1551 aa21.18■□□□□ 0.98
USP39-206ENST00000448971 DHX57Q6P158 1386 aaKnown RBP21.17■□□□□ 0.98
USP39-206ENST00000448971 XPCQ01831 940 aaPredicted RBP21.16■□□□□ 0.98
USP39-206ENST00000448971 TECPR2O15040 1411 aa21.15■□□□□ 0.98
USP39-206ENST00000448971 STK26Q9P289 416 aa21.15■□□□□ 0.98
USP39-206ENST00000448971 ABCC11Q96J66 1382 aa21.14■□□□□ 0.98
USP39-206ENST00000448971 LRPPRCP42704 1394 aaKnown RBP21.13■□□□□ 0.97
USP39-206ENST00000448971 NUTM2FA1L443 756 aa21.13■□□□□ 0.97
USP39-206ENST00000448971 TMEM132EQ6IEE7 984 aa21.13■□□□□ 0.97
USP39-206ENST00000448971 DCAF11Q8TEB1 546 aa21.13■□□□□ 0.97
USP39-206ENST00000448971 GJD4Q96KN9 370 aaPredicted RBP21.13■□□□□ 0.97
USP39-206ENST00000448971 KDM2AQ9Y2K7 1162 aa21.12■□□□□ 0.97
USP39-206ENST00000448971 PLEKHH1Q9ULM0 1364 aa21.11■□□□□ 0.97
USP39-206ENST00000448971 KNDC1Q76NI1 1749 aa21.11■□□□□ 0.97
USP39-206ENST00000448971 MARF1Q9Y4F3 1742 aaKnown RBP21.11■□□□□ 0.97
USP39-206ENST00000448971 CCDC125Q86Z20 511 aa21.1■□□□□ 0.97
USP39-206ENST00000448971 SPATA31A3Q5VYP0 1347 aa21.08■□□□□ 0.97
USP39-206ENST00000448971 NCBP3Q53F19 620 aaKnown RBP21.08■□□□□ 0.97
USP39-206ENST00000448971 CFAP70Q5T0N1 1121 aa21.08■□□□□ 0.97
USP39-206ENST00000448971 SIRT1Q96EB6 747 aa21.08■□□□□ 0.97
USP39-206ENST00000448971 YTHDC2Q9H6S0 1430 aaKnown RBP21.08■□□□□ 0.97
USP39-206ENST00000448971 UNC5CLQ8IV45 518 aa21.07■□□□□ 0.96
USP39-206ENST00000448971 STAC3Q96MF2 364 aa21.07■□□□□ 0.96
USP39-206ENST00000448971 C14orf93Q9H972 538 aaKnown RBP21.07■□□□□ 0.96
USP39-206ENST00000448971 ZRANB1Q9UGI0 708 aa21.06■□□□□ 0.96
USP39-206ENST00000448971 SLIT2O94813 1529 aa21.05■□□□□ 0.96
USP39-206ENST00000448971 KRT28Q7Z3Y7 464 aa21.05■□□□□ 0.96
USP39-206ENST00000448971 NEUROD1Q13562 356 aa21.04■□□□□ 0.96
USP39-206ENST00000448971 SIN3AQ96ST3 1273 aa21.04■□□□□ 0.96
USP39-206ENST00000448971 ADGRB1O14514 1584 aa21.04■□□□□ 0.96
USP39-206ENST00000448971 FMN2Q9NZ56 1722 aa21.04■□□□□ 0.96
USP39-206ENST00000448971 PCGF6Q9BYE7 350 aa21.03■□□□□ 0.96
USP39-206ENST00000448971 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.03■□□□□ 0.96
USP39-206ENST00000448971 RALGAPBQ86X10 1494 aa21.02■□□□□ 0.96
USP39-206ENST00000448971 GLI3P10071 1580 aa21.01■□□□□ 0.95
USP39-206ENST00000448971 RGPD8O14715 1765 aaPredicted RBP21■□□□□ 0.95
USP39-206ENST00000448971 PHF8Q9UPP1 1060 aa20.99■□□□□ 0.95
USP39-206ENST00000448971 KIF1AQ12756 1690 aa20.99■□□□□ 0.95
USP39-206ENST00000448971 DLC1Q96QB1 1528 aa20.99■□□□□ 0.95
USP39-206ENST00000448971 ONECUT3O60422 494 aaPredicted RBP20.98■□□□□ 0.95
USP39-206ENST00000448971 CABLES1Q8TDN4 633 aa20.98■□□□□ 0.95
USP39-206ENST00000448971 KIAA1210Q9ULL0 1709 aa20.98■□□□□ 0.95
USP39-206ENST00000448971 PSME1Q06323 249 aa20.97■□□□□ 0.95
USP39-206ENST00000448971 USP32Q8NFA0 1604 aa20.96■□□□□ 0.95
USP39-206ENST00000448971 VPS72Q15906 364 aa20.96■□□□□ 0.95
USP39-206ENST00000448971 L3MBTL2Q969R5 705 aa20.96■□□□□ 0.95
USP39-206ENST00000448971 BRWD3Q6RI45 1802 aa20.96■□□□□ 0.95
USP39-206ENST00000448971 BLMP54132 1417 aaPredicted RBP20.95■□□□□ 0.95
USP39-206ENST00000448971 SEPT12Q8IYM1 358 aa20.95■□□□□ 0.94
USP39-206ENST00000448971 TONSLQ96HA7 1378 aa20.95■□□□□ 0.94
USP39-206ENST00000448971 TNS3Q68CZ2 1445 aa20.95■□□□□ 0.94
USP39-206ENST00000448971 TRAK1Q9UPV9 953 aa20.94■□□□□ 0.94
USP39-206ENST00000448971 SBNO1A3KN83 1393 aa20.94■□□□□ 0.94
USP39-206ENST00000448971 SAFB2Q14151 953 aaKnown RBP eCLIP20.93■□□□□ 0.94
USP39-206ENST00000448971 DEFB132Q7Z7B7 95 aa20.93■□□□□ 0.94
USP39-206ENST00000448971 PRAM1Q96QH2 718 aa20.93■□□□□ 0.94
USP39-206ENST00000448971 FAM83GA6ND36 823 aa20.92■□□□□ 0.94
USP39-206ENST00000448971 POGKQ9P215 609 aa20.92■□□□□ 0.94
USP39-206ENST00000448971 ARHGEF28Q8N1W1 1705 aaKnown RBP20.92■□□□□ 0.94
USP39-206ENST00000448971 HAP1P54257 671 aaPredicted RBP20.91■□□□□ 0.94
USP39-206ENST00000448971 PLEKHG5O94827 1062 aa20.89■□□□□ 0.93
USP39-206ENST00000448971 LMOD2Q6P5Q4 547 aa20.89■□□□□ 0.93
USP39-206ENST00000448971 PMFBP1Q8TBY8 1022 aa20.89■□□□□ 0.93
USP39-206ENST00000448971 TRPM1Q7Z4N2 1603 aa20.89■□□□□ 0.93
USP39-206ENST00000448971 ADGRB2O60241 1585 aa20.89■□□□□ 0.93
USP39-206ENST00000448971 ARHGEF10O15013 1369 aa20.88■□□□□ 0.93
USP39-206ENST00000448971 NWD2Q9ULI1 1742 aa20.88■□□□□ 0.93
USP39-206ENST00000448971 NPM3O75607 178 aaKnown RBP20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms