RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 DDX10Q13206 875 aaKnown RBP31.97■■■□□ 2.71
CPSF4-204ENST00000436336 TULP4Q9NRJ4 1543 aa31.96■■■□□ 2.71
CPSF4-204ENST00000436336 DIEXFQ68CQ4 756 aaKnown RBP31.95■■■□□ 2.71
CPSF4-204ENST00000436336 POLR3GLQ9BT43 218 aa31.95■■■□□ 2.7
CPSF4-204ENST00000436336 EVC2Q86UK5 1308 aa31.93■■■□□ 2.7
CPSF4-204ENST00000436336 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.93■■■□□ 2.7
CPSF4-204ENST00000436336 KCNA6P17658 529 aa31.93■■■□□ 2.7
CPSF4-204ENST00000436336 MINK1Q8N4C8 1332 aaPredicted RBP31.93■■■□□ 2.7
CPSF4-204ENST00000436336 ADGRB2O60241 1585 aa31.91■■■□□ 2.7
CPSF4-204ENST00000436336 MYOM1P52179 1685 aa31.9■■■□□ 2.7
CPSF4-204ENST00000436336 PUS7Q96PZ0 661 aaKnown RBP31.88■■■□□ 2.69
CPSF4-204ENST00000436336 STRCP1A6NGW2 1772 aa31.87■■■□□ 2.69
CPSF4-204ENST00000436336 NKTRP30414 1462 aaKnown RBP31.86■■■□□ 2.69
CPSF4-204ENST00000436336 DMRT2Q9Y5R5 561 aa31.83■■■□□ 2.69
CPSF4-204ENST00000436336 NALCNQ8IZF0 1738 aa31.81■■■□□ 2.68
CPSF4-204ENST00000436336 CDK19Q9BWU1 502 aa31.8■■■□□ 2.68
CPSF4-204ENST00000436336 WASLO00401 505 aaPredicted RBP31.79■■■□□ 2.68
CPSF4-204ENST00000436336 SRPK2P78362 688 aaKnown RBP31.79■■■□□ 2.68
CPSF4-204ENST00000436336 CABP2Q9NPB3 220 aa31.78■■■□□ 2.68
CPSF4-204ENST00000436336 ATAD2Q6PL18 1390 aa31.76■■■□□ 2.67
CPSF4-204ENST00000436336 CDC42BPGQ6DT37 1551 aa31.72■■■□□ 2.67
CPSF4-204ENST00000436336 AEBP2Q6ZN18 517 aaPredicted RBP31.72■■■□□ 2.67
CPSF4-204ENST00000436336 PROSER2Q86WR7 435 aaPredicted RBP31.72■■■□□ 2.67
CPSF4-204ENST00000436336 NINLQ9Y2I6 1382 aa31.71■■■□□ 2.67
CPSF4-204ENST00000436336 ADGRL3Q9HAR2 1447 aa31.71■■■□□ 2.67
CPSF4-204ENST00000436336 FMN2Q9NZ56 1722 aa31.71■■■□□ 2.67
CPSF4-204ENST00000436336 NCOA3Q9Y6Q9 1424 aa31.68■■■□□ 2.66
CPSF4-204ENST00000436336 PANK3Q9H999 370 aa31.67■■■□□ 2.66
CPSF4-204ENST00000436336 TOPAZ1Q8N9V7 1692 aa31.67■■■□□ 2.66
CPSF4-204ENST00000436336 ITSN1Q15811 1721 aa31.67■■■□□ 2.66
CPSF4-204ENST00000436336 ATP7BP35670 1465 aa31.66■■■□□ 2.66
CPSF4-204ENST00000436336 XIRP1Q702N8 1843 aaKnown RBP31.66■■■□□ 2.66
CPSF4-204ENST00000436336 TMC1Q8TDI8 760 aa31.66■■■□□ 2.66
CPSF4-204ENST00000436336 USP32Q8NFA0 1604 aa31.66■■■□□ 2.66
CPSF4-204ENST00000436336 ZNF335Q9H4Z2 1342 aaPredicted RBP31.65■■■□□ 2.66
CPSF4-204ENST00000436336 RBM33Q96EV2 1170 aaKnown RBP31.65■■■□□ 2.66
CPSF4-204ENST00000436336 RGPD8O14715 1765 aaPredicted RBP31.65■■■□□ 2.66
CPSF4-204ENST00000436336 SLC12A5Q9H2X9 1139 aa31.64■■■□□ 2.66
CPSF4-204ENST00000436336 NUDT16Q96DE0 195 aaKnown RBP31.63■■■□□ 2.65
CPSF4-204ENST00000436336 TMEM94Q12767 1356 aa31.62■■■□□ 2.65
CPSF4-204ENST00000436336 C14orf37Q86TY3 774 aa31.61■■■□□ 2.65
CPSF4-204ENST00000436336 ANKARQ7Z5J8 1434 aa31.6■■■□□ 2.65
CPSF4-204ENST00000436336 PRR36Q9H6K5 1346 aa31.6■■■□□ 2.65
CPSF4-204ENST00000436336 PER1O15534 1290 aaPredicted RBP31.6■■■□□ 2.65
CPSF4-204ENST00000436336 CCDC61Q9Y6R9 512 aa31.6■■■□□ 2.65
CPSF4-204ENST00000436336 ANKRD36BQ8N2N9 1353 aa31.6■■■□□ 2.65
CPSF4-204ENST00000436336 PPIP5K1Q6PFW1 1433 aa31.59■■■□□ 2.65
CPSF4-204ENST00000436336 LRRC7Q96NW7 1537 aa31.59■■■□□ 2.65
CPSF4-204ENST00000436336 CABP1Q9NZU7 370 aa31.57■■■□□ 2.64
CPSF4-204ENST00000436336 AKAP12Q02952 1782 aa31.56■■■□□ 2.64
CPSF4-204ENST00000436336 ANP32CO43423 234 aa31.56■■■□□ 2.64
CPSF4-204ENST00000436336 CD163L1Q9NR16 1453 aa31.56■■■□□ 2.64
CPSF4-204ENST00000436336 C19orf44Q9H6X5 657 aa31.55■■■□□ 2.64
CPSF4-204ENST00000436336 DCCP43146 1447 aa31.54■■■□□ 2.64
CPSF4-204ENST00000436336 TERF2IPQ9NYB0 399 aa31.54■■■□□ 2.64
CPSF4-204ENST00000436336 NUTM2FA1L443 756 aa31.53■■■□□ 2.64
CPSF4-204ENST00000436336 A0A1W2PP64 1363 aa31.53■■■□□ 2.64
CPSF4-204ENST00000436336 KNSTRNQ9Y448 316 aa31.52■■■□□ 2.64
CPSF4-204ENST00000436336 MIER1Q8N108 512 aa31.52■■■□□ 2.64
CPSF4-204ENST00000436336 MON2Q7Z3U7 1717 aa31.51■■■□□ 2.64
CPSF4-204ENST00000436336 HDGFL2Q7Z4V5 671 aaPredicted RBP31.5■■■□□ 2.63
CPSF4-204ENST00000436336 CARD14Q9BXL6 1004 aa31.5■■■□□ 2.63
CPSF4-204ENST00000436336 MSH6P52701 1360 aa31.49■■■□□ 2.63
CPSF4-204ENST00000436336 PLEKHG3A1L390 1219 aa31.48■■■□□ 2.63
CPSF4-204ENST00000436336 CPSF1Q10570 1443 aaKnown RBP31.48■■■□□ 2.63
CPSF4-204ENST00000436336 NSD3Q9BZ95 1437 aa31.48■■■□□ 2.63
CPSF4-204ENST00000436336 LTBP4Q8N2S1 1624 aa31.46■■■□□ 2.63
CPSF4-204ENST00000436336 PRKRIP1Q9H875 184 aaPredicted RBP31.45■■■□□ 2.63
CPSF4-204ENST00000436336 NPC1L1Q9UHC9 1359 aa31.45■■■□□ 2.62
CPSF4-204ENST00000436336 ATF3P18847 181 aa31.44■■■□□ 2.62
CPSF4-204ENST00000436336 AMER1Q5JTC6 1135 aaPredicted RBP31.43■■■□□ 2.62
CPSF4-204ENST00000436336 KTN1Q86UP2 1357 aaKnown RBP31.42■■■□□ 2.62
CPSF4-204ENST00000436336 CADPS2Q86UW7 1296 aa31.42■■■□□ 2.62
CPSF4-204ENST00000436336 ZNF692Q9BU19 519 aaPredicted RBP31.42■■■□□ 2.62
CPSF4-204ENST00000436336 KIF20BQ96Q89 1820 aa31.41■■■□□ 2.62
CPSF4-204ENST00000436336 POLR3AO14802 1390 aaPredicted RBP31.4■■■□□ 2.62
CPSF4-204ENST00000436336 ACEP12821 1306 aa31.4■■■□□ 2.62
CPSF4-204ENST00000436336 MST1RQ04912 1400 aa31.4■■■□□ 2.62
CPSF4-204ENST00000436336 C1orf167Q5SNV9 1468 aa31.39■■■□□ 2.62
CPSF4-204ENST00000436336 NRKQ7Z2Y5 1582 aa31.39■■■□□ 2.62
CPSF4-204ENST00000436336 KIF1AQ12756 1690 aa31.39■■■□□ 2.62
CPSF4-204ENST00000436336 EDC4Q6P2E9 1401 aaKnown RBP31.38■■■□□ 2.61
CPSF4-204ENST00000436336 CGNL1Q0VF96 1302 aa31.38■■■□□ 2.61
CPSF4-204ENST00000436336 ANKRD26Q9UPS8 1709 aa31.37■■■□□ 2.61
CPSF4-204ENST00000436336 CC2D1BQ5T0F9 858 aaKnown RBP31.37■■■□□ 2.61
CPSF4-204ENST00000436336 PMFBP1Q8TBY8 1022 aa31.37■■■□□ 2.61
CPSF4-204ENST00000436336 PARD3Q8TEW0 1356 aa31.36■■■□□ 2.61
CPSF4-204ENST00000436336 CNGB1Q14028 1251 aaPredicted RBP31.36■■■□□ 2.61
CPSF4-204ENST00000436336 RALBP1Q15311 655 aa31.36■■■□□ 2.61
CPSF4-204ENST00000436336 PHF8Q9UPP1 1060 aa31.36■■■□□ 2.61
CPSF4-204ENST00000436336 NSD2O96028 1365 aa31.35■■■□□ 2.61
CPSF4-204ENST00000436336 ESCO1Q5FWF5 840 aa31.35■■■□□ 2.61
CPSF4-204ENST00000436336 NGDNQ8NEJ9 315 aaKnown RBP31.35■■■□□ 2.61
CPSF4-204ENST00000436336 USP6P35125 1406 aa31.34■■■□□ 2.61
CPSF4-204ENST00000436336 ORAI2Q96SN7 254 aa31.29■■■□□ 2.6
CPSF4-204ENST00000436336 CCER2I3L3R5 266 aa31.29■■■□□ 2.6
CPSF4-204ENST00000436336 SSH2Q76I76 1423 aa31.27■■■□□ 2.6
CPSF4-204ENST00000436336 BRD4O60885 1362 aaPredicted RBP31.25■■■□□ 2.59
CPSF4-204ENST00000436336 MYBBP1AQ9BQG0 1328 aaKnown RBP31.25■■■□□ 2.59
CPSF4-204ENST00000436336 FYB1O15117 783 aa31.25■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms