RNA–Protein interactions for RNA: ENST00000434813.3

CLK1-205, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 2,026 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-205ENST00000434813 TULP4Q9NRJ4 1543 aa24.46■■□□□ 1.51
CLK1-205ENST00000434813 TMEM132EQ6IEE7 984 aa24.45■■□□□ 1.51
CLK1-205ENST00000434813 SHPRHQ149N8 1683 aa24.45■■□□□ 1.5
CLK1-205ENST00000434813 PUS7Q96PZ0 661 aaKnown RBP24.45■■□□□ 1.5
CLK1-205ENST00000434813 SLFN5Q08AF3 891 aa24.44■■□□□ 1.5
CLK1-205ENST00000434813 NGEFQ8N5V2 710 aa24.44■■□□□ 1.5
CLK1-205ENST00000434813 CRBNQ96SW2 442 aa24.44■■□□□ 1.5
CLK1-205ENST00000434813 CCDC146Q8IYE0 955 aa24.43■■□□□ 1.5
CLK1-205ENST00000434813 TRMT2AQ8IZ69 625 aaKnown RBP24.43■■□□□ 1.5
CLK1-205ENST00000434813 TMEM131LA2VDJ0 1609 aa24.42■■□□□ 1.5
CLK1-205ENST00000434813 TCERG1O14776 1098 aaKnown RBP24.42■■□□□ 1.5
CLK1-205ENST00000434813 ERICH6Q7L0X2 663 aa24.42■■□□□ 1.5
CLK1-205ENST00000434813 MYO5BQ9ULV0 1848 aa24.4■■□□□ 1.5
CLK1-205ENST00000434813 APAF1O14727 1248 aa24.4■■□□□ 1.5
CLK1-205ENST00000434813 SLC12A5Q9H2X9 1139 aa24.4■■□□□ 1.5
CLK1-205ENST00000434813 STAG3Q9UJ98 1225 aa24.4■■□□□ 1.5
CLK1-205ENST00000434813 NKTRP30414 1462 aaKnown RBP24.39■■□□□ 1.5
CLK1-205ENST00000434813 EVC2Q86UK5 1308 aa24.39■■□□□ 1.49
CLK1-205ENST00000434813 NUTM2DQ5VT03 806 aaPredicted RBP24.38■■□□□ 1.49
CLK1-205ENST00000434813 MORC1Q86VD1 984 aa24.38■■□□□ 1.49
CLK1-205ENST00000434813 NSD2O96028 1365 aa24.37■■□□□ 1.49
CLK1-205ENST00000434813 ANKRD36BQ8N2N9 1353 aa24.37■■□□□ 1.49
CLK1-205ENST00000434813 C20orf194Q5TEA3 1177 aa24.36■■□□□ 1.49
CLK1-205ENST00000434813 SPATA31D1Q6ZQQ2 1576 aa24.36■■□□□ 1.49
CLK1-205ENST00000434813 CGNL1Q0VF96 1302 aa24.36■■□□□ 1.49
CLK1-205ENST00000434813 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.35■■□□□ 1.49
CLK1-205ENST00000434813 E9PSI1 815 aa24.35■■□□□ 1.49
CLK1-205ENST00000434813 MS4A1P11836 297 aa24.35■■□□□ 1.49
CLK1-205ENST00000434813 ZMYM3Q14202 1370 aa24.35■■□□□ 1.49
CLK1-205ENST00000434813 IQSEC2Q5JU85 1478 aa24.33■■□□□ 1.49
CLK1-205ENST00000434813 NINLQ9Y2I6 1382 aa24.32■■□□□ 1.48
CLK1-205ENST00000434813 ANP32AP39687 249 aaKnown RBP24.32■■□□□ 1.48
CLK1-205ENST00000434813 SPINK5Q9NQ38 1064 aaPredicted RBP24.32■■□□□ 1.48
CLK1-205ENST00000434813 PTPRMP28827 1452 aa24.31■■□□□ 1.48
CLK1-205ENST00000434813 NOP58Q9Y2X3 529 aaKnown RBP24.3■■□□□ 1.48
CLK1-205ENST00000434813 KDM2BQ8NHM5 1336 aa24.29■■□□□ 1.48
CLK1-205ENST00000434813 WWC1Q8IX03 1113 aa24.25■■□□□ 1.47
CLK1-205ENST00000434813 IPO9Q96P70 1041 aaKnown RBP24.25■■□□□ 1.47
CLK1-205ENST00000434813 DMRT2Q9Y5R5 561 aa24.25■■□□□ 1.47
CLK1-205ENST00000434813 ABCC11Q96J66 1382 aa24.25■■□□□ 1.47
CLK1-205ENST00000434813 TNNT2P45379 298 aaPredicted RBP24.25■■□□□ 1.47
CLK1-205ENST00000434813 RUNDC1Q96C34 613 aa24.25■■□□□ 1.47
CLK1-205ENST00000434813 YTHDC2Q9H6S0 1430 aaKnown RBP24.25■■□□□ 1.47
CLK1-205ENST00000434813 A2ML1A8K2U0 1454 aa24.25■■□□□ 1.47
CLK1-205ENST00000434813 PDE4AP27815 886 aa24.24■■□□□ 1.47
CLK1-205ENST00000434813 CFAP53Q96M91 514 aa24.24■■□□□ 1.47
CLK1-205ENST00000434813 CABP2Q9NPB3 220 aa24.24■■□□□ 1.47
CLK1-205ENST00000434813 CENPQQ7L2Z9 268 aaPredicted RBP24.23■■□□□ 1.47
CLK1-205ENST00000434813 BACH2Q9BYV9 841 aa24.23■■□□□ 1.47
CLK1-205ENST00000434813 ALKQ9UM73 1620 aa24.23■■□□□ 1.47
CLK1-205ENST00000434813 A0A1W2PP64 1363 aa24.23■■□□□ 1.47
CLK1-205ENST00000434813 MTHFSP49914 203 aa24.23■■□□□ 1.47
CLK1-205ENST00000434813 ANKRD26Q9UPS8 1709 aa24.23■■□□□ 1.47
CLK1-205ENST00000434813 ATAD2Q6PL18 1390 aa24.22■■□□□ 1.47
CLK1-205ENST00000434813 TNRQ92752 1358 aa24.22■■□□□ 1.47
CLK1-205ENST00000434813 PHF23Q9BUL5 403 aaPredicted RBP24.22■■□□□ 1.47
CLK1-205ENST00000434813 ADGRB2O60241 1585 aa24.21■■□□□ 1.47
CLK1-205ENST00000434813 SENP3Q9H4L4 574 aaPredicted RBP24.2■■□□□ 1.47
CLK1-205ENST00000434813 MED14O60244 1454 aa24.19■■□□□ 1.46
CLK1-205ENST00000434813 NCBP3Q53F19 620 aaKnown RBP24.19■■□□□ 1.46
CLK1-205ENST00000434813 STK26Q9P289 416 aa24.19■■□□□ 1.46
CLK1-205ENST00000434813 RIMS2Q9UQ26 1411 aa24.19■■□□□ 1.46
CLK1-205ENST00000434813 SAFB2Q14151 953 aaKnown RBP eCLIP24.18■■□□□ 1.46
CLK1-205ENST00000434813 BCAR3O75815 825 aa24.17■■□□□ 1.46
CLK1-205ENST00000434813 CCDC27Q2M243 656 aa24.17■■□□□ 1.46
CLK1-205ENST00000434813 TCP11L2Q8N4U5 519 aa24.17■■□□□ 1.46
CLK1-205ENST00000434813 CD163L1Q9NR16 1453 aa24.17■■□□□ 1.46
CLK1-205ENST00000434813 SRPK2P78362 688 aaKnown RBP24.17■■□□□ 1.46
CLK1-205ENST00000434813 PAK3O75914 559 aaPredicted RBP24.16■■□□□ 1.46
CLK1-205ENST00000434813 WDR63Q8IWG1 891 aa24.15■■□□□ 1.46
CLK1-205ENST00000434813 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.15■■□□□ 1.46
CLK1-205ENST00000434813 PRAM1Q96QH2 718 aa24.15■■□□□ 1.46
CLK1-205ENST00000434813 DLC1Q96QB1 1528 aa24.15■■□□□ 1.46
CLK1-205ENST00000434813 NLRP1Q9C000 1473 aa24.15■■□□□ 1.46
CLK1-205ENST00000434813 HDGFP51858 240 aaKnown RBP24.14■■□□□ 1.45
CLK1-205ENST00000434813 SETD1AO15047 1707 aaKnown RBP24.14■■□□□ 1.45
CLK1-205ENST00000434813 COL3A1P02461 1466 aaPredicted RBP24.14■■□□□ 1.45
CLK1-205ENST00000434813 PDE3AQ14432 1141 aa24.13■■□□□ 1.45
CLK1-205ENST00000434813 TERF2IPQ9NYB0 399 aa24.12■■□□□ 1.45
CLK1-205ENST00000434813 MINK1Q8N4C8 1332 aaPredicted RBP24.12■■□□□ 1.45
CLK1-205ENST00000434813 POGKQ9P215 609 aa24.11■■□□□ 1.45
CLK1-205ENST00000434813 RRP7AQ9Y3A4 280 aaKnown RBP24.11■■□□□ 1.45
CLK1-205ENST00000434813 SKAP1Q86WV1 359 aa24.11■■□□□ 1.45
CLK1-205ENST00000434813 ZBTB47Q9UFB7 747 aaPredicted RBP24.11■■□□□ 1.45
CLK1-205ENST00000434813 KIF20BQ96Q89 1820 aa24.1■■□□□ 1.45
CLK1-205ENST00000434813 NEUROD2Q15784 382 aa24.09■■□□□ 1.45
CLK1-205ENST00000434813 CEBPAP49715 358 aaPredicted RBP24.08■■□□□ 1.45
CLK1-205ENST00000434813 U2AF1L5P0DN76 240 aaPredicted RBP24.08■■□□□ 1.44
CLK1-205ENST00000434813 U2AF1Q01081 240 aaKnown RBP eCLIP24.08■■□□□ 1.441e-7■■■□□ 17.6
CLK1-205ENST00000434813 FER1L4A9Z1Z3 1794 aa24.06■■□□□ 1.44
CLK1-205ENST00000434813 NPM2Q86SE8 214 aaKnown RBP24.06■■□□□ 1.44
CLK1-205ENST00000434813 GGNBP2Q9H3C7 697 aa24.06■■□□□ 1.44
CLK1-205ENST00000434813 KDM4FA0A1W2PPD8 638 aa24.05■■□□□ 1.44
CLK1-205ENST00000434813 RARSP54136 660 aaKnown RBP24.05■■□□□ 1.44
CLK1-205ENST00000434813 FYB1O15117 783 aa24.05■■□□□ 1.44
CLK1-205ENST00000434813 TMEM2Q9UHN6 1383 aa24.04■■□□□ 1.44
CLK1-205ENST00000434813 ATP7BP35670 1465 aa24.04■■□□□ 1.44
CLK1-205ENST00000434813 NRXN3Q9Y4C0 1643 aa24.03■■□□□ 1.44
CLK1-205ENST00000434813 CANXP27824 592 aaKnown RBP24.03■■□□□ 1.44
CLK1-205ENST00000434813 PLPPR3Q6T4P5 718 aa24.03■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms