RNA–Protein interactions for RNA: ENST00000428445.1

VARS-216, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 863 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-216ENST00000428445 ESCO1Q5FWF5 840 aa24.81■■□□□ 1.56
VARS-216ENST00000428445 TMEM132EQ6IEE7 984 aa24.81■■□□□ 1.56
VARS-216ENST00000428445 RGS12O14924 1447 aa24.8■■□□□ 1.56
VARS-216ENST00000428445 LAMC1P11047 1609 aa24.8■■□□□ 1.56
VARS-216ENST00000428445 MPHOSPH9Q99550 1183 aa24.8■■□□□ 1.56
VARS-216ENST00000428445 CDK12Q9NYV4 1490 aaPredicted RBP24.8■■□□□ 1.56
VARS-216ENST00000428445 PRAG1Q86YV5 1406 aa24.78■■□□□ 1.56
VARS-216ENST00000428445 FOXO3O43524 673 aa24.76■■□□□ 1.55
VARS-216ENST00000428445 USP21Q9UK80 565 aa24.76■■□□□ 1.55
VARS-216ENST00000428445 PLEKHH1Q9ULM0 1364 aa24.76■■□□□ 1.55
VARS-216ENST00000428445 CCDC144AA2RUR9 1427 aa24.76■■□□□ 1.55
VARS-216ENST00000428445 SPATA31E1Q6ZUB1 1445 aa24.75■■□□□ 1.55
VARS-216ENST00000428445 IFT172Q9UG01 1749 aa24.72■■□□□ 1.55
VARS-216ENST00000428445 NPHP3Q7Z494 1330 aa24.7■■□□□ 1.54
VARS-216ENST00000428445 FNBP4Q8N3X1 1017 aaPredicted RBP24.7■■□□□ 1.54
VARS-216ENST00000428445 CDC42BPGQ6DT37 1551 aa24.7■■□□□ 1.54
VARS-216ENST00000428445 PXDNQ92626 1479 aa24.7■■□□□ 1.54
VARS-216ENST00000428445 LRPPRCP42704 1394 aaKnown RBP24.69■■□□□ 1.54
VARS-216ENST00000428445 TRPC5Q9UL62 973 aaPredicted RBP24.68■■□□□ 1.54
VARS-216ENST00000428445 COL22A1Q8NFW1 1626 aaPredicted RBP24.68■■□□□ 1.54
VARS-216ENST00000428445 ANKRD30BQ9BXX2 1392 aa24.67■■□□□ 1.54
VARS-216ENST00000428445 ABCC11Q96J66 1382 aa24.66■■□□□ 1.54
VARS-216ENST00000428445 MYOM2P54296 1465 aa24.65■■□□□ 1.54
VARS-216ENST00000428445 TECPR2O15040 1411 aa24.65■■□□□ 1.54
VARS-216ENST00000428445 PIK3C2GO75747 1445 aa24.64■■□□□ 1.54
VARS-216ENST00000428445 ATRNO75882 1429 aa24.63■■□□□ 1.53
VARS-216ENST00000428445 YTHDC2Q9H6S0 1430 aaKnown RBP24.63■■□□□ 1.53
VARS-216ENST00000428445 CFAP70Q5T0N1 1121 aa24.63■■□□□ 1.53
VARS-216ENST00000428445 PLEKHG5O94827 1062 aa24.62■■□□□ 1.53
VARS-216ENST00000428445 BCL9LQ86UU0 1499 aa24.62■■□□□ 1.53
VARS-216ENST00000428445 RGPD8O14715 1765 aaPredicted RBP24.62■■□□□ 1.53
VARS-216ENST00000428445 KNDC1Q76NI1 1749 aa24.61■■□□□ 1.53
VARS-216ENST00000428445 SAFB2Q14151 953 aaKnown RBP eCLIP24.61■■□□□ 1.53
VARS-216ENST00000428445 C14orf93Q9H972 538 aaKnown RBP24.6■■□□□ 1.53
VARS-216ENST00000428445 FMN2Q9NZ56 1722 aa24.6■■□□□ 1.53
VARS-216ENST00000428445 MARF1Q9Y4F3 1742 aaKnown RBP24.6■■□□□ 1.53
VARS-216ENST00000428445 KRT28Q7Z3Y7 464 aa24.59■■□□□ 1.53
VARS-216ENST00000428445 ATAD2Q6PL18 1390 aa24.57■■□□□ 1.52
VARS-216ENST00000428445 SPATA31A3Q5VYP0 1347 aa24.57■■□□□ 1.52
VARS-216ENST00000428445 CABLES1Q8TDN4 633 aa24.55■■□□□ 1.52
VARS-216ENST00000428445 GJD4Q96KN9 370 aaPredicted RBP24.55■■□□□ 1.52
VARS-216ENST00000428445 PRAM1Q96QH2 718 aa24.54■■□□□ 1.52
VARS-216ENST00000428445 SIRT1Q96EB6 747 aa24.53■■□□□ 1.52
VARS-216ENST00000428445 PHF8Q9UPP1 1060 aa24.53■■□□□ 1.52
VARS-216ENST00000428445 EP400Q96L91 3159 aa24.52■■□□□ 1.52
VARS-216ENST00000428445 ACIN1Q9UKV3 1341 aaKnown RBP24.52■■□□□ 1.52
VARS-216ENST00000428445 DHX57Q6P158 1386 aaKnown RBP24.52■■□□□ 1.52
VARS-216ENST00000428445 NRXN1Q9ULB1 1477 aa24.51■■□□□ 1.51
VARS-216ENST00000428445 UNC5CLQ8IV45 518 aa24.5■■□□□ 1.51
VARS-216ENST00000428445 KIF1AQ12756 1690 aa24.5■■□□□ 1.51
VARS-216ENST00000428445 LMOD2Q6P5Q4 547 aa24.49■■□□□ 1.51
VARS-216ENST00000428445 PMFBP1Q8TBY8 1022 aa24.49■■□□□ 1.51
VARS-216ENST00000428445 RAB3GAP2Q9H2M9 1393 aa24.48■■□□□ 1.51
VARS-216ENST00000428445 SLIT2O94813 1529 aa24.47■■□□□ 1.51
VARS-216ENST00000428445 HAP1P54257 671 aaPredicted RBP24.47■■□□□ 1.51
VARS-216ENST00000428445 POGKQ9P215 609 aa24.47■■□□□ 1.51
VARS-216ENST00000428445 KDM2AQ9Y2K7 1162 aa24.47■■□□□ 1.51
VARS-216ENST00000428445 SRCAPQ6ZRS2 3230 aa24.46■■□□□ 1.51
VARS-216ENST00000428445 GLI3P10071 1580 aa24.46■■□□□ 1.51
VARS-216ENST00000428445 RALGAPBQ86X10 1494 aa24.46■■□□□ 1.51
VARS-216ENST00000428445 PSME1Q06323 249 aa24.46■■□□□ 1.51
VARS-216ENST00000428445 HIRIP3Q9BW71 556 aaPredicted RBP24.46■■□□□ 1.51
VARS-216ENST00000428445 TRAK1Q9UPV9 953 aa24.46■■□□□ 1.51
VARS-216ENST00000428445 TNS3Q68CZ2 1445 aa24.44■■□□□ 1.5
VARS-216ENST00000428445 USP32Q8NFA0 1604 aa24.44■■□□□ 1.5
VARS-216ENST00000428445 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.44■■□□□ 1.5
VARS-216ENST00000428445 BRWD3Q6RI45 1802 aa24.42■■□□□ 1.5
VARS-216ENST00000428445 MINK1Q8N4C8 1332 aaPredicted RBP24.41■■□□□ 1.5
VARS-216ENST00000428445 DCAF11Q8TEB1 546 aa24.4■■□□□ 1.5
VARS-216ENST00000428445 CCDC9Q9Y3X0 531 aaKnown RBP24.4■■□□□ 1.5
VARS-216ENST00000428445 FAM83GA6ND36 823 aa24.39■■□□□ 1.49
VARS-216ENST00000428445 SEPT12Q8IYM1 358 aa24.39■■□□□ 1.49
VARS-216ENST00000428445 SBNO1A3KN83 1393 aa24.39■■□□□ 1.49
VARS-216ENST00000428445 ZRANB1Q9UGI0 708 aa24.38■■□□□ 1.49
VARS-216ENST00000428445 ADGRB1O14514 1584 aa24.37■■□□□ 1.49
VARS-216ENST00000428445 PRR36Q9H6K5 1346 aa24.37■■□□□ 1.49
VARS-216ENST00000428445 DLC1Q96QB1 1528 aa24.37■■□□□ 1.49
VARS-216ENST00000428445 ABCA3Q99758 1704 aa24.37■■□□□ 1.49
VARS-216ENST00000428445 PLCH1Q4KWH8 1693 aa24.37■■□□□ 1.49
VARS-216ENST00000428445 VPS72Q15906 364 aa24.36■■□□□ 1.49
VARS-216ENST00000428445 DEFB132Q7Z7B7 95 aa24.36■■□□□ 1.49
VARS-216ENST00000428445 CCDC125Q86Z20 511 aa24.36■■□□□ 1.49
VARS-216ENST00000428445 ARHGEF10O15013 1369 aa24.32■■□□□ 1.48
VARS-216ENST00000428445 ANKARQ7Z5J8 1434 aa24.32■■□□□ 1.48
VARS-216ENST00000428445 TRPM3Q9HCF6 1732 aaPredicted RBP24.32■■□□□ 1.48
VARS-216ENST00000428445 NWD2Q9ULI1 1742 aa24.3■■□□□ 1.48
VARS-216ENST00000428445 ADGRB2O60241 1585 aa24.3■■□□□ 1.48
VARS-216ENST00000428445 WASLO00401 505 aaPredicted RBP24.3■■□□□ 1.48
VARS-216ENST00000428445 BLMP54132 1417 aaPredicted RBP24.29■■□□□ 1.48
VARS-216ENST00000428445 ONECUT3O60422 494 aaPredicted RBP24.29■■□□□ 1.48
VARS-216ENST00000428445 BTG4Q9NY30 223 aa24.29■■□□□ 1.48
VARS-216ENST00000428445 A0A0G2JS52 829 aa24.28■■□□□ 1.48
VARS-216ENST00000428445 PAK3O75914 559 aaPredicted RBP24.28■■□□□ 1.48
VARS-216ENST00000428445 MYT1Q01538 1121 aa24.28■■□□□ 1.48
VARS-216ENST00000428445 KRT27Q7Z3Y8 459 aa24.28■■□□□ 1.48
VARS-216ENST00000428445 FAM98CQ17RN3 349 aaKnown RBP24.27■■□□□ 1.48
VARS-216ENST00000428445 NGDNQ8NEJ9 315 aaKnown RBP24.27■■□□□ 1.48
VARS-216ENST00000428445 ALS2Q96Q42 1657 aa24.27■■□□□ 1.48
VARS-216ENST00000428445 GPRASP1Q5JY77 1395 aa24.27■■□□□ 1.48
VARS-216ENST00000428445 TULP4Q9NRJ4 1543 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms